Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 8.1e-28 126.3 63 100.0
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 7.9e-23 109.8 59 91.5
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.3e-22 109.0 59 91.5
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 3.9e-22 107.5 59 89.8
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 8.7e-22 106.3 59 89.8
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.9e-21 105.1 59 86.4
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 4.3e-21 104.0 59 88.1
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 5.7e-21 103.6 59 83.1
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 5.7e-21 103.6 59 86.4
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 5.7e-21 103.6 59 84.7
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 9.6e-21 102.8 59 79.7
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 9.6e-21 102.8 59 84.7
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 1.3e-20 102.4 59 81.4
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 1.6e-20 102.1 59 83.1
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 2.8e-20 101.3 59 79.7
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 2.8e-20 101.3 59 78.0
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 3.7e-20 100.9 59 81.4
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 3.7e-20 100.9 59 78.0
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 3.7e-20 100.9 59 79.7
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 3.7e-20 100.9 59 79.7
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 3.7e-20 100.9 59 79.7
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 3.7e-20 100.9 59 79.7
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 4.8e-20 100.5 59 79.7
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 4.8e-20 100.5 59 81.4
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 4.8e-20 100.5 59 79.7
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 4.8e-20 100.5 59 79.7
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 6.3e-20 100.1 59 79.7
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 6.3e-20 100.1 59 78.0
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 6.3e-20 100.1 59 78.0
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 6.3e-20 100.1 59 78.0
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 6.3e-20 100.1 59 78.0
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 6.3e-20 100.1 59 79.7
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 6.3e-20 100.1 59 78.0
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 6.3e-20 100.1 59 81.4
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 6.3e-20 100.1 59 78.0
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 8.2e-20 99.8 59 79.7
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 8.2e-20 99.8 59 76.3
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 8.2e-20 99.8 59 79.7
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 1.1e-19 99.4 59 79.7
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.1e-19 99.4 59 79.7
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 1.4e-19 99.0 59 79.7
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 1.8e-19 98.6 59 79.7
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.8e-19 98.6 59 79.7
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 2.4e-19 98.2 59 74.6
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 2.4e-19 98.2 59 74.6
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 2.4e-19 98.2 59 78.0
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 2.4e-19 98.2 59 78.0
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 2.4e-19 98.2 59 78.0
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.4e-19 98.2 59 78.0
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 2.4e-19 98.2 59 78.0
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 3.1e-19 97.8 59 76.3
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 3.1e-19 97.8 59 76.3
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 3.1e-19 97.8 59 78.0
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 3.1e-19 97.8 59 79.7
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 4.1e-19 97.4 59 76.3
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 4.1e-19 97.4 59 78.0
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 4.1e-19 97.4 59 78.0
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 5.3e-19 97.1 59 76.3
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 5.3e-19 97.1 59 76.3
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 5.3e-19 97.1 59 79.7
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 5.3e-19 97.1 59 76.3
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 5.3e-19 97.1 59 79.7
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 5.3e-19 97.1 59 79.7
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 5.3e-19 97.1 59 78.0
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 6.9e-19 96.7 59 76.3
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 6.9e-19 96.7 59 76.3
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 9.0e-19 96.3 59 78.0
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 9.0e-19 96.3 59 78.0
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 9.0e-19 96.3 59 76.3
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.2e-18 95.9 59 74.6
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.2e-18 95.9 59 74.6
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 1.2e-18 95.9 59 76.3
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 1.5e-18 95.5 59 78.0
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.5e-18 95.5 58 79.3
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 1.5e-18 95.5 59 74.6
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 2.0e-18 95.1 59 76.3
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 2.0e-18 95.1 59 74.6
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 2.0e-18 95.1 59 72.9
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.0e-18 95.1 59 74.6
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.0e-18 95.1 59 74.6
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 2.0e-18 95.1 59 76.3
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 3.4e-18 94.4 59 76.3
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 3.4e-18 94.4 59 78.0
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 4.5e-18 94.0 59 76.3
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 4.5e-18 94.0 59 74.6
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 5.9e-18 93.6 59 78.0
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 5.9e-18 93.6 59 76.3
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 7.6e-18 93.2 59 71.2
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.7e-17 92.0 59 69.5
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 2.9e-17 91.3 66 69.7
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 2.9e-17 91.3 76 64.5
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 3.8e-17 90.9 59 72.9
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.4e-16 89.0 59 71.2
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.9e-16 88.6 59 69.5
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.5e-16 88.2 59 69.5
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.5e-16 88.2 59 69.5
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 2.5e-16 88.2 59 71.2
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 3.2e-16 87.8 59 72.9
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 7.2e-16 86.7 77 59.7
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 9.3e-16 86.3 59 67.8
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 1.6e-15 85.5 59 67.8
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 4.6e-15 84.0 59 67.8
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 7.9e-15 83.2 59 67.8
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 1.3e-14 82.4 92 51.1
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.5e-13 79.0 51 70.6
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 2.2e-12 75.1 67 61.2
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 4.5e-10 67.4 42 69.0
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.9e-09 64.7 59 50.8
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 6.1e-07 57.0 52 57.7
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 1.8e-06 55.5 37 67.6
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 6.7e-06 53.5 36 66.7
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 8.8e-06 53.1 33 72.7


User provided reference genes

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