Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 4.3e-41 171.0 93 100.0
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.5e-14 82.8 49 83.7
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 1.5e-14 82.8 49 83.7
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 1.5e-14 82.8 49 83.7
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.6e-14 82.0 49 83.7
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 4.4e-14 81.3 48 83.3
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 5.8e-14 80.9 59 72.9
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 5.8e-14 80.9 49 81.6
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 7.6e-14 80.5 49 81.6
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 7.6e-14 80.5 49 81.6
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 7.6e-14 80.5 49 81.6
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 7.6e-14 80.5 49 81.6
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 9.9e-14 80.1 48 81.2
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 9.9e-14 80.1 48 81.2
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 9.9e-14 80.1 48 81.2
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.3e-13 79.7 47 83.0
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.3e-13 79.7 47 83.0
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.3e-13 79.7 47 83.0
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 1.3e-13 79.7 48 83.3
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.7e-13 79.3 48 81.2
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.7e-13 79.3 48 81.2
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.7e-13 79.3 48 81.2
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 1.7e-13 79.3 48 81.2
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 1.7e-13 79.3 49 79.6
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 1.7e-13 79.3 49 79.6
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.7e-13 79.3 48 81.2
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.7e-13 79.3 48 81.2
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 2.2e-13 79.0 49 79.6
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 2.2e-13 79.0 49 81.6
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 2.2e-13 79.0 48 81.2
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.9e-13 78.6 48 79.2
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.9e-13 78.6 49 79.6
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.9e-13 78.6 49 79.6
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 3.8e-13 78.2 49 79.6
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 3.8e-13 78.2 49 79.6
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 3.8e-13 78.2 49 79.6
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 3.8e-13 78.2 48 81.2
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 3.8e-13 78.2 49 79.6
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 3.8e-13 78.2 48 81.2
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 3.8e-13 78.2 48 81.2
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 4.9e-13 77.8 47 80.9
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 4.9e-13 77.8 48 79.2
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 4.9e-13 77.8 48 79.2
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 4.9e-13 77.8 61 70.5
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 6.4e-13 77.4 60 70.0
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 6.4e-13 77.4 48 79.2
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 6.4e-13 77.4 48 79.2
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 6.4e-13 77.4 48 79.2
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 6.4e-13 77.4 49 77.6
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 6.4e-13 77.4 60 70.0
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 8.4e-13 77.0 48 79.2
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 1.1e-12 76.6 48 79.2
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.1e-12 76.6 48 79.2
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 1.1e-12 76.6 48 79.2
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.1e-12 76.6 48 79.2
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.1e-12 76.6 48 77.1
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.1e-12 76.6 48 79.2
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 1.1e-12 76.6 48 79.2
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 1.1e-12 76.6 48 79.2
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 1.1e-12 76.6 48 79.2
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.4e-12 76.3 48 79.2
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.4e-12 76.3 48 79.2
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.4e-12 76.3 59 69.5
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.4e-12 76.3 59 69.5
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.4e-12 76.3 48 79.2
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.4e-12 76.3 49 77.6
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.4e-12 76.3 49 77.6
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.4e-12 76.3 49 77.6
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 1.9e-12 75.9 49 77.6
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.9e-12 75.9 48 79.2
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 2.4e-12 75.5 48 77.1
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.2e-12 75.1 49 77.6
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.2e-12 75.1 49 77.6
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 3.2e-12 75.1 48 77.1
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 3.2e-12 75.1 48 77.1
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 4.2e-12 74.7 48 77.1
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 5.4e-12 74.3 48 77.1
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 7.1e-12 73.9 48 77.1
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 7.1e-12 73.9 49 75.5
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 7.1e-12 73.9 49 75.5
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 9.3e-12 73.6 48 77.1
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 9.3e-12 73.6 48 77.1
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 9.3e-12 73.6 48 77.1
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 9.3e-12 73.6 48 77.1
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.2e-11 73.2 48 77.1
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.6e-11 72.8 48 77.1
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 2.1e-11 72.4 50 76.0
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.7e-11 72.0 49 75.5
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 2.7e-11 72.0 49 75.5
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 2.7e-11 72.0 48 75.0
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 4.6e-11 71.2 50 74.0
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 6.0e-11 70.9 49 71.4
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 6.0e-11 70.9 49 73.5
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.3e-10 69.7 49 69.4
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.7e-10 69.3 48 68.8
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.7e-10 69.3 48 68.8
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 2.3e-10 68.9 51 70.6
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 5.1e-10 67.8 49 71.4
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 5.1e-10 67.8 51 70.6
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 5.1e-10 67.8 50 72.0
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.5e-09 66.2 50 70.0
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.5e-09 66.2 50 70.0
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.5e-09 65.5 49 67.3
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 2.5e-09 65.5 50 68.0
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.5e-09 65.5 58 60.3
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 3.3e-09 65.1 49 61.2
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 4.3e-09 64.7 49 67.3
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 5.6e-09 64.3 49 69.4
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 9.6e-09 63.5 49 65.3
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.4e-07 59.7 48 66.7
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.4e-07 59.7 48 66.7
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.4e-07 59.7 48 66.7
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.0e-06 55.8 48 62.5
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.6e-06 55.5 28 89.3
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.6e-06 55.5 48 58.3


User provided reference genes

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