Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0459461 Rosa chinensis HOM05D000876 ORTHO05D000285 2.2e-26 121.3 54 100.0
RcHm_v2.0_Chr4g0406011 Rosa chinensis HOM05D000876 ORTHO05D000285 3.6e-16 87.4 44 77.3
RcHm_v2.0_Chr5g0009581 Rosa chinensis HOM05D010466 ORTHO05D013607 5.2e-15 83.6 49 67.3
FAN12G2878 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.2e-11 72.4 39 71.8
FAN14G5115 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.2e-11 72.4 39 71.8
FAN21G2291 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.2e-11 72.4 41 68.3
FAN09G0655 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.5e-11 70.5 39 69.2
FvH4_2g31320 Fragaria vesca HOM05D000876 ORTHO05D022651 1.7e-10 68.6 47 63.8
FvH4_7g08972 Fragaria vesca HOM05D000876 ORTHO05D000285 1.7e-10 68.6 47 63.8
FAN03G2155 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.7e-10 68.6 47 63.8
FAN09G1076 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.7e-10 68.6 44 63.6
FAN09G4256 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.7e-10 68.6 47 63.8
FAN22G0137 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.6e-10 66.2 47 59.6
FAN28G0183 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.5e-09 65.5 40 60.0
FvH4_4g20923 Fragaria vesca HOM05D000876 ORTHO05D000285 4.3e-09 63.9 40 57.5
FvH4_5g23913 Fragaria vesca HOM05D000876 ORTHO05D000285 4.3e-09 63.9 40 57.5
FvH4_6g39920 Fragaria vesca HOM05D000876 ORTHO05D000285 4.3e-09 63.9 47 61.7
FAN05G1224 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.3e-09 63.9 48 62.5
FAN04G1353 Fragaria x ananassa HOM05D000876 ORTHO05D000285 7.3e-09 63.2 44 52.3
FAN26G1613 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.2e-08 62.4 40 57.5
FAN12G1859 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.1e-08 61.6 44 52.3
FAN03G1971 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.1e-07 57.8 29 75.9
FAN08G3019 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.1e-07 57.8 44 50.0
FAN15G0148 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.1e-07 57.8 38 55.3
HPP92_018135 Vanilla planifolia HOM05D000876 ORTHO05D000285 1.2e-06 55.8 49 42.9
FvH4_3g21471 Fragaria vesca HOM05D000034 ORTHO05D000285 2.0e-06 55.1 40 52.5
FAN10G2856 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.0e-06 55.1 40 52.5
FAN11G2191 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.0e-06 55.1 40 52.5
FAN17G2644 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.0e-06 55.1 40 52.5
FAN19G0003 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.0e-06 55.1 40 52.5
FAN20G0415 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.0e-06 55.1 40 52.5
FAN23G0726 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.0e-06 55.1 40 52.5
Atru.chr3.2332 Acer truncatum HOM05D000034 ORTHO05D000037 2.6e-06 54.7 40 52.5
FAN17G2734 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.6e-06 54.7 40 52.5
FAN28G0660 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.6e-06 54.7 40 50.0
Prupe.5G020800 Prunus persica HOM05D000876 ORTHO05D000285 3.4e-06 54.3 45 48.9
RcHm_v2.0_Chr2g0153151 Rosa chinensis HOM05D000876 ORTHO05D000285 3.4e-06 54.3 40 52.5
FAN17G0164 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.4e-06 53.9 40 50.0
FvH4_1g10461 Fragaria vesca HOM05D000034 ORTHO05D000037 5.8e-06 53.5 40 50.0
Thecc.05G288300 Theobroma cacao HOM05D000876 ORTHO05D000285 5.8e-06 53.5 41 46.3
arahy.Tifrunner.gnm1.ann1.NV9TN2 Arachis hypogaea HOM05D000034 ORTHO05D000037 7.5e-06 53.1 41 46.3
Gorai.013G041500 Gossypium raimondii HOM05D000876 ORTHO05D000285 7.5e-06 53.1 45 44.4
RcHm_v2.0_Chr7g0199281 Rosa chinensis HOM05D000876 ORTHO05D000285 7.5e-06 53.1 41 43.9
HPP92_015385 Vanilla planifolia HOM05D000876 ORTHO05D000285 7.5e-06 53.1 40 42.5
HPP92_027007 Vanilla planifolia HOM05D000876 ORTHO05D000285 7.5e-06 53.1 40 42.5
Gorai.002G128100 Gossypium raimondii HOM05D000876 ORTHO05D000285 9.8e-06 52.8 42 45.2


User provided reference genes

Program Settings