Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0459341 Rosa chinensis HOM05D003440 ORTHO05D003953 3.9e-61 238.0 127 100.0
FvH4_6g09130 Fragaria vesca HOM05D003440 ORTHO05D003953 4.3e-52 208.0 125 87.2
FAN09G2448 Fragaria x ananassa HOM05D000046 ORTHO05D000457 2.8e-51 205.3 126 86.5
FAN14G4320 Fragaria x ananassa HOM05D003440 ORTHO05D003953 2.8e-51 205.3 125 86.4
FAN05G4201 Fragaria x ananassa HOM05D003440 ORTHO05D003953 5.2e-50 201.1 129 86.0
FAN02G2454 Fragaria x ananassa HOM05D003440 ORTHO05D003953 5.4e-47 191.0 139 73.4
Prupe.6G300400 Prunus persica HOM05D003440 ORTHO05D003953 9.7e-20 100.5 129 43.4
MD04G1180500 Malus domestica HOM05D003440 ORTHO05D003953 1.1e-18 97.1 121 42.1
MD12G1195900 Malus domestica HOM05D003440 ORTHO05D003953 1.8e-18 96.3 120 47.5
CANSAT25G3389 Cannabis sativa HOM05D003440 ORTHO05D003953 1.2e-17 93.6 58 75.9
TAR633G0436 Trochodendron aralioides HOM05D003440 ORTHO05D003953 1.5e-17 93.2 115 42.6
Cpa.g.sc0.29 Carica papaya HOM05D003440 ORTHO05D003953 2.6e-17 92.4 55 69.1
MBI15_g11745_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 2.6e-17 92.4 116 43.1
Potri.016G143400 Populus trichocarpa HOM05D003440 ORTHO05D003953 2.6e-17 92.4 110 45.5
TWI74G0415 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 2.6e-17 92.4 117 45.3
Gohir.A02G000800 Gossypium hirsutum HOM05D003440 ORTHO05D003953 4.5e-17 91.7 113 43.4
Gohir.D02G001100 Gossypium hirsutum HOM05D003440 ORTHO05D003953 4.5e-17 91.7 107 44.9
Gorai.005G001600 Gossypium raimondii HOM05D003440 ORTHO05D003953 4.5e-17 91.7 107 44.9
Eucgr.K01315 Eucalyptus grandis HOM05D003440 ORTHO05D003953 7.6e-17 90.9 111 45.0
Cfa016982 Carpinus fangiana HOM05D003440 ORTHO05D003953 2.2e-16 89.4 63 60.3
Ciclev10013742m.g Citrus clementina HOM05D003440 ORTHO05D003953 5.0e-16 88.2 76 53.9
Carub.0024s0002 Capsella rubella HOM05D003440 ORTHO05D003953 1.9e-15 86.3 80 50.0
Sabra06G0088600 Salix brachista HOM05D003440 ORTHO05D003953 1.9e-15 86.3 115 43.5
Thecc.04G064200 Theobroma cacao HOM05D003440 ORTHO05D003953 1.9e-15 86.3 68 54.4
Atru.chr8.26 Acer truncatum HOM05D003440 ORTHO05D003953 2.5e-15 85.9 102 43.1
Dinv16919 Davidia involucrata HOM05D003440 ORTHO05D003953 3.2e-15 85.5 62 61.3
Potri.006G113700 Populus trichocarpa HOM05D003440 ORTHO05D003953 3.2e-15 85.5 115 44.3
GSVIVG01029833001 Vitis vinifera HOM05D003440 ORTHO05D003953 4.2e-15 85.1 109 45.9
AL6G10020 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 1.6e-14 83.2 78 48.7
PSO384G1065 Papaver somniferum HOM05D003440 ORTHO05D003953 2.1e-14 82.8 61 62.3
Sp6g41240 Schrenkiella parvula HOM05D003440 ORTHO05D003953 2.7e-14 82.4 56 58.9
Nn5g26738 Nelumbo nucifera HOM05D003440 ORTHO05D003953 3.6e-14 82.0 66 54.5
Aqoxy2G00611 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 4.6e-14 81.6 59 61.0
HanXRQChr01g0000641 Helianthus annuus HOM05D003440 ORTHO05D003953 4.6e-14 81.6 118 41.5
Aa31LG5G11290 Aethionema arabicum HOM05D000046 ORTHO05D000457 6.1e-14 81.3 79 46.8
AT5G01015 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 6.1e-14 81.3 113 38.1
Thhalv10015102m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 1.8e-13 79.7 56 67.9
CARHR212370 Cardamine hirsuta HOM05D003440 ORTHO05D003953 2.3e-13 79.3 76 55.3
QL07p030389 Quercus lobata HOM05D003440 ORTHO05D003953 3.0e-13 79.0 63 57.1
QL07p030748 Quercus lobata HOM05D003440 ORTHO05D003953 3.0e-13 79.0 63 57.1
CSS0039616 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 3.9e-13 78.6 64 53.1
CSS0018403 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 5.1e-13 78.2 63 54.0
Lsat_1_v5_gn_5_153521 Lactuca sativa HOM05D003440 ORTHO05D003953 5.1e-13 78.2 112 41.1
HanXRQChr11g0329311 Helianthus annuus HOM05D003440 ORTHO05D003953 1.5e-12 76.6 63 55.6
Lsat_1_v5_gn_8_108200 Lactuca sativa HOM05D003440 ORTHO05D003953 1.9e-12 76.3 65 52.3
QL07p030310 Quercus lobata HOM05D003440 ORTHO05D003953 2.5e-12 75.9 80 45.0
QL07p030704 Quercus lobata HOM05D003440 ORTHO05D003953 4.3e-12 75.1 80 45.0
HanXRQChr11g0329301 Helianthus annuus HOM05D003440 ORTHO05D003953 5.7e-12 74.7 113 39.8
Haze_21225 Corylus avellana HOM05D003440 ORTHO05D003953 7.4e-12 74.3 67 50.7
PGR004G0491 Punica granatum HOM05D003440 ORTHO05D003953 1.7e-11 73.2 125 35.2
COL.COLO4_20128 Corchorus olitorius HOM05D003440 ORTHO05D003953 3.7e-11 72.0 120 37.5
ATR1127G118 Amborella trichopoda HOM05D003440 ORTHO05D003953 1.8e-10 69.7 129 33.3
SEGI_09135 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 5.3e-10 68.2 59 50.8
Actinidia34765 Actinidia chinensis HOM05D003440 ORTHO05D003953 7.7e-09 64.3 109 38.5
Lj1g0025945 Lotus japonicus HOM05D003440 ORTHO05D003953 2.2e-08 62.8 107 29.0
Lalb_Chr19g0127521 Lupinus albus HOM05D003440 ORTHO05D003953 2.2e-08 62.8 102 31.4
Sed0001280 Sechium edule HOM05D003440 ORTHO05D003953 2.2e-08 62.8 58 46.6
ClCG03G010850 Citrullus lanatus HOM05D003440 ORTHO05D003953 2.9e-08 62.4 103 30.1
RcHm_v2.0_Chr3g0447971 Rosa chinensis HOM05D003440 ORTHO05D003953 2.9e-08 62.4 118 31.4
A07p32790 Brassica napus HOM05D003440 ORTHO05D003953 3.8e-08 62.0 58 44.8
CsaV3_1G044590 Cucumis sativus L. HOM05D003440 ORTHO05D003953 3.8e-08 62.0 103 30.1
COL.COLO4_27388 Corchorus olitorius HOM05D003440 ORTHO05D003953 5.0e-08 61.6 103 32.0
Os11g0463700 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 5.0e-08 61.6 57 43.9
Potri.019G053100 Populus trichocarpa HOM05D003440 ORTHO05D003953 5.0e-08 61.6 113 32.7
BraA07t30906Z Brassica rapa HOM05D003440 ORTHO05D003953 8.5e-08 60.8 118 31.4
Manes.09G184900 Manihot esculenta HOM05D003440 ORTHO05D003953 8.5e-08 60.8 111 29.7
THA.LOC104821944 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 8.5e-08 60.8 56 44.6
Ciclev10013140m.g Citrus clementina HOM05D003440 ORTHO05D003953 1.1e-07 60.5 56 42.9
Lalb_Chr02g0149431 Lupinus albus HOM05D003440 ORTHO05D003953 1.1e-07 60.5 97 36.1
Sabra19G0062600 Salix brachista HOM05D003440 ORTHO05D003953 1.1e-07 60.5 114 32.5
PGSC0003DMG400011798 Solanum tuberosum HOM05D003440 ORTHO05D003953 1.1e-07 60.5 67 40.3
BcaB05g24106 Brassica carinata HOM05D003440 ORTHO05D003953 1.4e-07 60.1 121 30.6
CDE05G2380 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 1.4e-07 60.1 56 41.1
CDE05G3613 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 1.4e-07 60.1 56 41.1
Dinv06976 Davidia involucrata HOM05D003440 ORTHO05D003953 1.4e-07 60.1 56 42.9
Manes.08G104200 Manihot esculenta HOM05D003440 ORTHO05D003953 1.4e-07 60.1 88 31.8
Medtr7g079830 Medicago truncatula HOM05D003440 ORTHO05D003953 1.4e-07 60.1 102 30.4
Os11g0121300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 1.4e-07 60.1 57 47.4
Os12g0121000 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 1.4e-07 60.1 57 47.4
Phvul.007G118600 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 1.4e-07 60.1 56 42.9
Thecc.05G200800 Theobroma cacao HOM05D003440 ORTHO05D003953 1.4e-07 60.1 116 30.2
Dinv29111 Davidia involucrata HOM05D003440 ORTHO05D003953 1.9e-07 59.7 56 42.9
Hma1.2p1_0123F.1_g057890 Hydrangea macrophylla HOM05D003440 ORTHO05D003953 1.9e-07 59.7 56 42.9
GSVIVG01019121001 Vitis vinifera HOM05D003440 ORTHO05D003953 1.9e-07 59.7 56 42.9
CARHR056980 Cardamine hirsuta HOM05D003440 ORTHO05D003953 2.5e-07 59.3 56 42.9
ClCG11G010770 Citrullus lanatus HOM05D003440 ORTHO05D003953 2.5e-07 59.3 92 29.3
MBI07_g09261_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 2.5e-07 59.3 56 42.9
Nn1g09786 Nelumbo nucifera HOM05D003440 ORTHO05D003953 2.5e-07 59.3 56 42.9
AT1G65295 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 3.2e-07 58.9 117 31.6
Duzib106G1272 Durio zibethinus HOM05D003440 ORTHO05D003953 3.2e-07 58.9 116 30.2
Glyma.10G170700 Glycine max HOM05D003440 ORTHO05D003953 3.2e-07 58.9 56 41.1
Nitab4.5_0001653g0080 Nicotiana tabacum HOM05D003440 ORTHO05D003953 3.2e-07 58.9 56 41.1
Nitab4.5_0012961g0010 Nicotiana tabacum HOM05D003440 ORTHO05D003953 3.2e-07 58.9 56 41.1
Solyc11g008910.2 Solanum lycopersicum HOM05D003440 ORTHO05D003953 3.2e-07 58.9 56 41.1
Sopen11g004700 Solanum pennellii HOM05D003440 ORTHO05D003953 3.2e-07 58.9 56 41.1
PGSC0003DMG400016235 Solanum tuberosum HOM05D003440 ORTHO05D003953 3.2e-07 58.9 56 41.1
CSS0029757 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 4.2e-07 58.5 56 41.1
CDE12G0097 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 4.2e-07 58.5 117 31.6
Eucgr.H01385 Eucalyptus grandis HOM05D003440 ORTHO05D003953 4.2e-07 58.5 114 30.7
Glyma.20G219200 Glycine max HOM05D003440 ORTHO05D003953 4.2e-07 58.5 56 41.1
Gohir.D13G092000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 4.2e-07 58.5 110 29.1
arahy.Tifrunner.gnm1.ann1.UVCE5Y Arachis hypogaea HOM05D003440 ORTHO05D003953 5.5e-07 58.2 102 29.4
BcaC03g14694 Brassica carinata HOM05D003440 ORTHO05D003953 5.5e-07 58.2 112 33.0
C02p21330 Brassica napus HOM05D003440 ORTHO05D003953 5.5e-07 58.2 112 33.0
BolC2t08270H Brassica oleracea HOM05D003440 ORTHO05D003953 5.5e-07 58.2 112 33.0
BraA02t06373Z Brassica rapa HOM05D003440 ORTHO05D003953 5.5e-07 58.2 112 33.0
DCAR_007995 Daucus carota HOM05D003440 ORTHO05D003953 5.5e-07 58.2 56 42.9
FAN02G4240 Fragaria x ananassa HOM05D003440 ORTHO05D003953 5.5e-07 58.2 112 30.4
arahy.Tifrunner.gnm1.ann1.7Z41ZG Arachis hypogaea HOM05D003440 ORTHO05D003953 7.2e-07 57.8 102 29.4
C06p39000 Brassica napus HOM05D003440 ORTHO05D003953 7.2e-07 57.8 118 31.4
BolC6t38992H Brassica oleracea HOM05D003440 ORTHO05D003953 7.2e-07 57.8 118 31.4
Carub.0002s1098 Capsella rubella HOM05D003440 ORTHO05D003953 7.2e-07 57.8 120 31.7
Cc09_g03520 Coffea canephora HOM05D003440 ORTHO05D003953 7.2e-07 57.8 56 41.1
FvH4_6g00580 Fragaria vesca HOM05D003440 ORTHO05D003953 7.2e-07 57.8 108 32.4
Gorai.010G138900 Gossypium raimondii HOM05D003440 ORTHO05D003953 7.2e-07 57.8 110 29.1
Lalb_Chr03g0038421 Lupinus albus HOM05D003440 ORTHO05D003953 7.2e-07 57.8 111 26.1
Hund21895 Selenicereus undatus HOM05D003440 ORTHO05D003953 7.2e-07 57.8 95 29.5
TWI75G0665 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 7.2e-07 57.8 56 39.3
AL2G20420 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 9.4e-07 57.4 115 30.4
BcaNung05535 Brassica carinata HOM05D003440 ORTHO05D003953 9.4e-07 57.4 117 31.6
A02p13170 Brassica napus HOM05D003440 ORTHO05D003953 9.4e-07 57.4 112 30.4
Duzib128G1849 Durio zibethinus HOM05D003440 ORTHO05D003953 9.4e-07 57.4 103 30.1
THA.LOC104805696 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 9.4e-07 57.4 110 28.2
TWI36G0275 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 9.4e-07 57.4 56 39.3
EL10Ac4g09977 Beta vulgaris HOM05D003440 ORTHO05D003953 1.2e-06 57.0 93 32.3
CANSAT54G0566 Cannabis sativa HOM05D003440 ORTHO05D003953 1.2e-06 57.0 114 28.1
Prupe.6G360500 Prunus persica HOM05D003440 ORTHO05D003953 1.2e-06 57.0 119 27.7
QL04p042289 Quercus lobata HOM05D003440 ORTHO05D003953 1.2e-06 57.0 106 28.3
Sed0018617 Sechium edule HOM05D003440 ORTHO05D003953 1.2e-06 57.0 106 29.2
SEGI_04004 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 1.2e-06 57.0 56 41.1
TPR.G14664 Trifolium pratense HOM05D003440 ORTHO05D003953 1.2e-06 57.0 55 40.0
Zm00001eb169930 Zea mays HOM05D003440 ORTHO05D003953 1.2e-06 57.0 56 41.1
Migut.F01880 Erythranthe guttata HOM05D003440 ORTHO05D003953 2.1e-06 56.2 88 31.8
Thhalv10019335m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 2.1e-06 56.2 115 29.6
Gohir.A13G154500 Gossypium hirsutum HOM05D003440 ORTHO05D003953 2.1e-06 56.2 116 31.0
Gohir.D13G159200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 2.1e-06 56.2 116 31.0
Gorai.013G179900 Gossypium raimondii HOM05D003440 ORTHO05D003953 2.1e-06 56.2 116 31.0
Manes.08G166301 Manihot esculenta HOM05D003440 ORTHO05D003953 2.7e-06 55.8 94 37.2
QL01p048843 Quercus lobata HOM05D003440 ORTHO05D003953 2.7e-06 55.8 106 28.3
Solyc09g005200.3 Solanum lycopersicum HOM05D003440 ORTHO05D003953 7.9e-06 54.3 38 52.6
Sopen09g001180 Solanum pennellii HOM05D003440 ORTHO05D003953 7.9e-06 54.3 38 52.6


User provided reference genes

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