Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 8.2e-252 873.2 440 100.0
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 7.5e-221 770.4 441 88.7
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 4.7e-215 751.1 438 84.5
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 2.0e-213 745.7 441 84.1
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 1.6e-210 736.1 441 83.4
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.3e-193 679.1 443 80.6
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 3.1e-190 668.7 441 75.1
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 4.4e-189 664.8 430 77.2
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.7e-188 662.9 380 88.7
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.7e-188 662.9 380 88.7
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 1.9e-187 659.4 432 74.8
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 3.2e-187 658.7 440 73.9
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 3.5e-186 655.2 438 73.5
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 4.6e-186 654.8 438 74.7
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 6.0e-186 654.4 430 75.3
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 6.0e-186 654.4 430 74.4
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 2.3e-185 652.5 441 74.8
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 3.0e-185 652.1 430 74.7
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.1e-184 650.2 439 72.7
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 1.9e-184 649.4 439 73.3
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 5.6e-184 647.9 430 74.9
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 1.6e-183 646.4 438 72.6
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.6e-183 646.4 430 74.7
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 2.1e-183 646.0 430 74.9
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 4.0e-182 641.7 432 73.1
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 6.9e-182 641.0 432 72.2
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 6.9e-182 641.0 432 72.5
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 9.0e-182 640.6 430 73.3
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 9.0e-182 640.6 438 72.6
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.5e-181 639.8 430 74.2
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 2.6e-181 639.0 439 74.0
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 3.4e-181 638.6 432 73.4
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 4.5e-181 638.3 431 72.9
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 7.6e-181 637.5 440 72.5
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 3.5e-178 628.6 437 71.4
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 7.9e-178 627.5 430 72.1
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 7.9e-178 627.5 430 71.9
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 1.0e-177 627.1 430 72.6
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 2.3e-177 625.9 432 71.3
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 1.1e-176 623.6 432 69.4
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 3.3e-176 622.1 432 70.1
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 4.3e-176 621.7 431 72.4
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 4.3e-176 621.7 432 70.8
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 5.6e-176 621.3 433 71.4
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 9.6e-176 620.5 438 69.2
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 1.3e-175 620.2 433 70.7
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 2.1e-175 619.4 430 70.7
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 2.4e-174 615.9 432 69.0
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 9.0e-174 614.0 479 65.1
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.0e-173 612.8 430 70.5
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 9.9e-173 610.5 434 71.0
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 2.2e-172 609.4 432 68.8
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 1.1e-171 607.1 436 68.6
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 1.1e-171 607.1 435 68.3
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.5e-171 605.9 437 67.5
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 2.5e-171 605.9 459 67.8
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 9.3e-171 604.0 430 69.8
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 1.2e-170 603.6 433 69.1
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 1.6e-170 603.2 438 69.2
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 2.1e-170 602.8 438 69.4
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 4.6e-170 601.7 430 69.5
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 7.9e-170 600.9 436 68.8
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 7.9e-170 600.9 445 69.7
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 7.9e-170 600.9 430 70.0
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 1.3e-169 600.1 441 68.3
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.3e-169 599.4 425 67.8
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 6.7e-169 597.8 441 68.5
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 1.9e-168 596.3 430 69.5
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 2.5e-168 595.9 433 68.6
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 4.3e-168 595.1 434 68.7
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 3.1e-166 589.0 425 66.8
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 9.0e-166 587.4 417 69.5
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 1.2e-165 587.0 434 67.3
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 2.0e-165 586.3 430 68.6
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 1.9e-163 579.7 431 66.4
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 9.3e-163 577.4 472 63.3
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 1.6e-162 576.6 475 62.5
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 2.7e-162 575.9 523 58.1
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 4.6e-162 575.1 430 66.0
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 6.0e-162 574.7 417 68.6
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 6.7e-161 571.2 439 64.2
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.1e-160 570.5 433 65.1
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 4.8e-159 565.1 474 62.2
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.4e-158 563.5 322 88.8
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 1.1e-155 553.9 436 64.2
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 2.5e-155 552.7 519 55.5
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 5.5e-155 551.6 373 71.8
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 2.1e-154 549.7 430 66.7
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.0e-153 547.4 430 66.0
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 1.7e-151 540.0 422 66.1
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 1.7e-151 540.0 453 60.9
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 2.4e-150 536.2 430 65.6
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 1.2e-149 533.9 438 63.5
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 3.2e-147 525.8 380 68.7
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 1.5e-144 516.9 377 67.9
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 9.7e-144 514.2 363 71.1
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 2.4e-142 509.6 457 60.6
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 1.0e-137 494.2 725 41.2
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 5.2e-137 491.9 363 67.8
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 3.3e-136 489.2 435 58.2
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 2.7e-130 469.5 703 42.0
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 5.7e-128 461.8 447 55.7
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 2.2e-119 433.3 434 51.4
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 2.7e-117 426.4 339 64.3
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 1.0e-116 424.5 301 70.4
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 7.2e-115 418.3 443 48.5
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 1.0e-113 414.5 341 62.5
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 4.5e-109 399.1 296 68.2
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 1.5e-104 384.0 435 47.6
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 3.2e-94 349.7 350 51.7
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 2.7e-93 346.7 237 81.0
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 2.1e-90 337.0 222 75.7
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 5.1e-84 315.8 215 80.9
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 1.5e-83 314.3 283 64.7
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 2.5e-83 313.5 220 70.5
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 6.8e-81 305.4 245 64.1
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 8.1e-66 255.4 430 35.1
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 3.4e-64 250.0 161 77.0
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.9e-59 234.2 132 81.8
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.9e-55 220.3 435 34.3
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 4.8e-50 203.0 144 66.0
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 6.2e-50 202.6 134 73.1
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.8e-49 201.1 159 64.8
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 2.5e-43 180.6 141 63.8
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 7.4e-43 179.1 126 71.4
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 3.4e-40 170.2 320 35.0
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 7.9e-37 159.1 150 51.3
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 1.4e-33 148.3 201 45.8
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 2.4e-33 147.5 194 46.4
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.8e-26 124.0 120 55.0
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 1.2e-24 118.6 146 47.9
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 2.8e-18 97.4 76 56.6
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 6.3e-18 96.3 54 75.9
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 3.1e-17 94.0 76 57.9
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 3.1e-17 94.0 85 48.2
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 4.5e-16 90.1 76 57.9
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 2.9e-15 87.4 76 56.6
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 2.3e-12 77.8 39 97.4
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 5.7e-11 73.2 54 68.5
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 2.8e-10 70.9 43 74.4
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 1.6e-08 65.1 42 64.3
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 2.7e-08 64.3 37 81.1
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 3.5e-08 63.9 47 63.8


User provided reference genes

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