Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0459121 Rosa chinensis HOM05D002804 ORTHO05D003755 9.7e-145 516.9 286 100.0
RcHm_v2.0_Chr3g0459201 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-64 250.8 253 58.1
RcHm_v2.0_Chr3g0459171 Rosa chinensis HOM05D002804 ORTHO05D003755 1.2e-62 244.2 258 56.2
FvH4_6g08910 Fragaria vesca HOM05D002804 ORTHO05D003755 2.0e-57 226.9 253 53.0
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.6e-57 226.5 258 53.5
RcHm_v2.0_Chr3g0459181 Rosa chinensis HOM05D002804 ORTHO05D003755 1.6e-51 207.2 265 49.8
FvH4_6g08080 Fragaria vesca HOM05D002804 ORTHO05D003755 4.0e-29 132.9 164 51.2
RcHm_v2.0_Chr3g0457771 Rosa chinensis HOM05D002804 ORTHO05D003755 2.8e-27 126.7 94 70.2
FAN14G4263 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.8e-26 124.0 226 39.4
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 3.0e-21 106.7 134 50.0
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 7.5e-20 102.1 161 44.1
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.5e-20 102.1 131 47.3
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.5e-20 102.1 161 44.1
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 9.8e-20 101.7 150 44.7
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 2.4e-18 97.1 131 45.8
RcHm_v2.0_Chr0c11g0499511 Rosa chinensis HOM05D002804 ORTHO05D003755 2.4e-18 97.1 247 32.4
RcHm_v2.0_Chr7g0236031 Rosa chinensis HOM05D002804 ORTHO05D003755 3.1e-18 96.7 247 27.9
FAN02G1170 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.1e-18 95.1 138 44.9
RcHm_v2.0_Chr7g0235991 Rosa chinensis HOM05D002804 ORTHO05D003755 1.2e-17 94.7 248 30.2
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 2.0e-17 94.0 157 42.0
QL03p011442 Quercus lobata HOM05D002804 ORTHO05D003755 2.0e-17 94.0 131 42.0
RcHm_v2.0_Chr0c11g0499461 Rosa chinensis HOM05D002804 ORTHO05D003755 3.5e-17 93.2 250 30.4
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 5.9e-17 92.4 133 44.4
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 1.0e-16 91.7 128 45.3
RcHm_v2.0_Chr0c11g0499481 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-16 91.3 247 27.9
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-16 91.3 95 47.4
RcHm_v2.0_Chr7g0236241 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-16 91.3 247 27.9
FAN18G3080 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-16 90.9 246 27.6
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 2.2e-16 90.5 95 47.4
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.2e-16 90.5 95 47.4
RcHm_v2.0_Chr7g0235901 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-16 90.5 247 27.1
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 2.9e-16 90.1 138 41.3
RcHm_v2.0_Chr0c11g0499411 Rosa chinensis HOM05D002804 ORTHO05D003755 3.8e-16 89.7 247 27.5
RcHm_v2.0_Chr7g0235921 Rosa chinensis HOM05D002804 ORTHO05D003755 3.8e-16 89.7 246 27.2
RcHm_v2.0_Chr7g0236231 Rosa chinensis HOM05D002804 ORTHO05D003755 5.0e-16 89.4 247 29.1
FvH4_5g35080 Fragaria vesca HOM05D002804 ORTHO05D003755 1.1e-15 88.2 248 28.2
Dinv30965 Davidia involucrata HOM05D002804 ORTHO05D003755 1.5e-15 87.8 96 46.9
Phvul.007G207300 Phaseolus vulgaris HOM05D002804 ORTHO05D003755 1.5e-15 87.8 140 41.4
FAN02G0182 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-15 87.4 97 44.3
RcHm_v2.0_Chr7g0236051 Rosa chinensis HOM05D002804 ORTHO05D003755 2.5e-15 87.0 251 28.7
Sed0019381 Sechium edule HOM05D002804 ORTHO05D003755 2.5e-15 87.0 149 36.9
FvH4_5g31080 Fragaria vesca HOM05D002804 ORTHO05D003755 3.2e-15 86.7 248 29.4
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 5.5e-15 85.9 155 43.9
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 7.2e-15 85.5 140 42.9
FAN18G3994 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.5e-15 85.1 244 29.1
FvH4_6g08940 Fragaria vesca HOM05D002804 ORTHO05D003755 1.2e-14 84.7 95 50.5
FAN02G4619 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-14 84.7 95 50.5
RcHm_v2.0_Chr0c11g0499501 Rosa chinensis HOM05D002804 ORTHO05D003755 1.2e-14 84.7 254 29.1
RcHm_v2.0_Chr7g0235851 Rosa chinensis HOM05D002804 ORTHO05D003755 1.2e-14 84.7 250 30.4
FAN13G2866 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-14 84.3 246 27.2
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 1.6e-14 84.3 140 42.9
FAN18G3851 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-14 84.0 246 26.8
AT5G03560 Arabidopsis thaliana HOM05D002804 ORTHO05D003755 2.8e-14 83.6 127 44.1
FvH4_5g35050 Fragaria vesca HOM05D002804 ORTHO05D003755 6.1e-14 82.4 236 26.7
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 6.1e-14 82.4 162 36.4
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 1.8e-13 80.9 133 43.6
Sc14g0008950 Simmondsia chinensis HOM05D002804 ORTHO05D003755 1.8e-13 80.9 143 39.9
FvH4_5g35000 Fragaria vesca HOM05D002804 ORTHO05D003755 2.3e-13 80.5 246 27.2
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 2.3e-13 80.5 145 38.6
Thecc.08G200300 Theobroma cacao HOM05D002804 ORTHO05D003755 2.3e-13 80.5 139 40.3
Atru.chr12.1496 Acer truncatum HOM05D002804 ORTHO05D003755 3.0e-13 80.1 134 38.8
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 5.2e-13 79.3 162 37.7
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 8.8e-13 78.6 124 35.5
FvH4_5g31070 Fragaria vesca HOM05D002804 ORTHO05D003755 1.5e-12 77.8 246 25.6
FAN05G3459 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-12 77.8 172 36.6
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 2.0e-12 77.4 173 37.0
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 2.0e-12 77.4 173 37.0
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 2.6e-12 77.0 161 34.2
FvH4_5g35330 Fragaria vesca HOM05D002804 ORTHO05D003755 3.4e-12 76.6 251 29.5
RcHm_v2.0_Chr0c11g0499471 Rosa chinensis HOM05D002804 ORTHO05D003755 3.4e-12 76.6 247 27.5
Nitab4.5_0004090g0070 Nicotiana tabacum HOM05D002804 ORTHO05D003755 4.4e-12 76.3 157 34.4
Lj5A312T57 Lonicera japonica HOM05D002804 ORTHO05D003755 5.7e-12 75.9 144 36.8
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 7.5e-12 75.5 161 35.4
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 7.5e-12 75.5 186 34.9
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.3e-11 74.7 140 33.6
RcHm_v2.0_Chr3g0459221 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-11 74.7 132 40.2
MD16G1193600 Malus domestica HOM05D002804 ORTHO05D003755 2.2e-11 73.9 252 26.6
FAN18G0864 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.7e-11 73.2 248 27.4
RcHm_v2.0_Chr7g0236201 Rosa chinensis HOM05D002804 ORTHO05D003755 3.7e-11 73.2 100 46.0
RcHm_v2.0_Chr7g0236331 Rosa chinensis HOM05D002804 ORTHO05D003755 3.7e-11 73.2 229 27.1
COL.COLO4_05836 Corchorus olitorius HOM05D002804 ORTHO05D003755 4.9e-11 72.8 73 50.7
FvH4_7g08991 Fragaria vesca HOM05D002804 ORTHO05D003755 4.9e-11 72.8 104 46.2
FAN06G4842 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.9e-11 72.8 104 46.2
FvH4_5g05670 Fragaria vesca HOM05D002804 ORTHO05D003755 6.3e-11 72.4 256 28.9
FAN04G3225 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.3e-11 72.4 255 29.0
RcHm_v2.0_Chr1g0342791 Rosa chinensis HOM05D002804 ORTHO05D003755 6.3e-11 72.4 232 27.2
RcHm_v2.0_Chr7g0235841 Rosa chinensis HOM05D002804 ORTHO05D025426 6.3e-11 72.4 248 29.8
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.3e-11 72.0 256 28.9
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.3e-11 72.0 256 28.9
RcHm_v2.0_Chr7g0193131 Rosa chinensis HOM05D002804 ORTHO05D003755 8.3e-11 72.0 98 45.9
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 1.1e-10 71.6 124 41.9
MD16G1177800 Malus domestica HOM05D002804 ORTHO05D003755 1.4e-10 71.2 62 51.6
FvH4_5g35322 Fragaria vesca HOM05D002804 ORTHO05D003755 1.8e-10 70.9 100 46.0
FAN18G3114 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.8e-10 70.9 236 27.5
FAN02G1490 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.1e-10 70.1 60 53.3
RcHm_v2.0_Chr7g0235811 Rosa chinensis HOM05D002804 ORTHO05D003755 3.1e-10 70.1 90 46.7
RcHm_v2.0_Chr7g0236591 Rosa chinensis HOM05D002804 ORTHO05D003755 3.1e-10 70.1 237 27.0
FvH4_5g35300 Fragaria vesca HOM05D002804 ORTHO05D003755 4.1e-10 69.7 252 24.2
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.1e-10 69.7 98 45.9
FvH4_5g35320 Fragaria vesca HOM05D002804 ORTHO05D003755 5.4e-10 69.3 228 28.1
FvH4_5g32070 Fragaria vesca HOM05D002804 ORTHO05D003755 7.0e-10 68.9 61 50.8
FAN03G3123 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.0e-10 68.9 243 28.0
FAN18G1608 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.0e-10 68.9 61 50.8
FAN04G2366 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.2e-10 68.6 98 44.9
unitig_22.g5757 Utricularia gibba HOM05D002804 ORTHO05D003755 9.2e-10 68.6 159 34.0
FvH4_5g34900 Fragaria vesca HOM05D002804 ORTHO05D025426 1.2e-09 68.2 221 30.3
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 1.6e-09 67.8 115 34.8
FvH4_7g08990 Fragaria vesca HOM05D002804 ORTHO05D003755 1.6e-09 67.8 248 27.0
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-09 67.8 250 26.4
DCAR_003256 Daucus carota HOM05D002804 ORTHO05D003755 2.0e-09 67.4 96 41.7
HPP92_022010 Vanilla planifolia HOM05D002804 ORTHO05D003755 2.7e-09 67.0 133 36.1
FAN18G3590 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.5e-09 66.2 230 28.3
RcHm_v2.0_Chr1g0342991 Rosa chinensis HOM05D002804 ORTHO05D003755 5.9e-09 65.9 60 53.3
BraA03t09504Z Brassica rapa HOM05D007539 ORTHO05D009315 7.8e-09 65.5 62 53.2
FAN13G1711 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.8e-09 65.5 99 44.4
MSTRG.5178 Avicennia marina HOM05D002804 ORTHO05D003755 1.0e-08 65.1 150 34.7
RcHm_v2.0_Chr7g0236191 Rosa chinensis HOM05D002804 ORTHO05D022637 1.0e-08 65.1 73 42.5
RcHm_v2.0_Chr7g0235941 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-08 64.7 62 51.6
FAN18G4091 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-08 64.3 250 27.2
RcHm_v2.0_Chr7g0235881 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-08 64.3 60 46.7
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 2.3e-08 63.9 61 45.9
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 2.9e-08 63.5 52 55.8
Migut.N00995 Erythranthe guttata HOM05D002804 ORTHO05D003755 3.8e-08 63.2 129 34.1
FvH4_4g16590 Fragaria vesca HOM05D002804 ORTHO05D003755 3.8e-08 63.2 87 40.2
FAN12G4232 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.8e-08 63.2 87 40.2
RcHm_v2.0_Chr7g0236171 Rosa chinensis HOM05D002804 ORTHO05D003755 3.8e-08 63.2 60 48.3
Peaxi162Scf01065g00002 Petunia axillaris HOM05D002804 ORTHO05D003755 6.6e-08 62.4 64 50.0
FvH4_5g31001 Fragaria vesca HOM05D002804 ORTHO05D003755 8.6e-08 62.0 66 48.5
FAN13G1238 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.6e-08 62.0 62 50.0
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 8.6e-08 62.0 58 53.4
RcHm_v2.0_Chr0c11g0499391 Rosa chinensis HOM05D002804 ORTHO05D003755 8.6e-08 62.0 60 46.7
Ca_10220_v3 Cicer arietinum L. HOM05D002804 ORTHO05D003755 1.1e-07 61.6 56 50.0
FvH4_5g35060 Fragaria vesca HOM05D002804 ORTHO05D003755 1.1e-07 61.6 250 26.0
FAN18G4551 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-07 61.6 60 46.7
Oeu029180.1 Olea europaea HOM05D002804 ORTHO05D003755 1.1e-07 61.6 158 31.0
FvH4_5g35253 Fragaria vesca HOM05D002804 ORTHO05D003755 1.5e-07 61.2 62 46.8
FAN08G1735 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-07 61.2 60 46.7
FAN18G1140 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-07 61.2 62 46.8
RcHm_v2.0_Chr7g0236071 Rosa chinensis HOM05D002804 ORTHO05D003755 1.5e-07 61.2 67 47.8
FAN06G4567 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.5e-07 60.5 83 47.0
RcHm_v2.0_Chr7g0235971 Rosa chinensis HOM05D002804 ORTHO05D003755 2.5e-07 60.5 70 42.9
FAN25G3079 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.3e-07 60.1 62 45.2
RcHm_v2.0_Chr7g0236621 Rosa chinensis HOM05D002804 ORTHO05D003755 3.3e-07 60.1 97 45.4
RcHm_v2.0_Chr7g0235981 Rosa chinensis HOM05D002804 ORTHO05D003755 4.3e-07 59.7 60 50.0
FvH4_5g35070 Fragaria vesca HOM05D002804 ORTHO05D029636 1.2e-06 58.2 68 45.6
FAN08G3255 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-06 57.8 62 45.2
RcHm_v2.0_Chr3g0459101 Rosa chinensis HOM05D018614 ORTHO05D035385 1.6e-06 57.8 100 38.0
MD04G1183300 Malus domestica HOM05D002804 ORTHO05D003755 2.1e-06 57.4 91 44.0
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 2.1e-06 57.4 94 36.2
RcHm_v2.0_Chr7g0235871 Rosa chinensis HOM05D002804 ORTHO05D003755 2.1e-06 57.4 68 44.1
FvH4_7g09010 Fragaria vesca HOM05D002804 ORTHO05D003755 2.8e-06 57.0 64 48.4
FvH4_6g08812 Fragaria vesca HOM05D002804 ORTHO05D003755 3.6e-06 56.6 58 46.6
FvH4_6g08840 Fragaria vesca HOM05D018614 ORTHO05D035385 3.6e-06 56.6 100 38.0
FAN14G1178 Fragaria x ananassa HOM05D018614 ORTHO05D035385 3.6e-06 56.6 100 38.0
FAN08G3046 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.7e-06 56.2 240 25.0
MD12G1196700 Malus domestica HOM05D002804 ORTHO05D003755 4.7e-06 56.2 91 38.5
FvH4_5g34930 Fragaria vesca HOM05D002804 ORTHO05D025426 6.1e-06 55.8 220 28.6
FvH4_6g08830 Fragaria vesca HOM05D018614 ORTHO05D045472 6.1e-06 55.8 124 35.5
RcHm_v2.0_Chr0c11g0499321 Rosa chinensis HOM05D002804 ORTHO05D029636 6.1e-06 55.8 70 41.4
RcHm_v2.0_Chr7g0236101 Rosa chinensis HOM05D002804 ORTHO05D029636 6.1e-06 55.8 70 41.4
FAN10G1692 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.0e-06 55.5 60 40.0
FAN14G3353 Fragaria x ananassa HOM05D018614 ORTHO05D045472 8.0e-06 55.5 107 38.3


User provided reference genes

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