Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 1.8e-69 265.8 131 100.0
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.9e-58 229.2 133 87.2
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 7.3e-55 217.2 133 82.0
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 7.3e-55 217.2 133 82.0
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 7.3e-55 217.2 133 82.0
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 4.7e-54 214.5 131 82.4
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.6e-41 172.9 102 87.3
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 1.6e-33 146.4 136 60.3
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 4.6e-33 144.8 136 60.3
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 5.1e-32 141.4 136 59.6
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 8.1e-22 107.5 112 58.9
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 3.1e-21 105.5 112 58.9
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 4.0e-21 105.1 87 66.7
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 1.7e-19 99.8 112 55.4
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 5.5e-18 94.7 90 61.1
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 7.1e-18 94.4 92 62.0
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 5.1e-16 88.2 111 53.2
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 8.7e-16 87.4 125 50.4
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 1.5e-15 86.7 89 59.6
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 1.5e-15 86.7 125 45.6
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 4.3e-15 85.1 98 52.0
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 4.3e-15 85.1 86 57.0
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 7.4e-15 84.3 105 48.6
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 2.1e-14 82.8 76 57.9
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 2.1e-14 82.8 114 50.9
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 2.1e-14 82.8 81 59.3
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 2.1e-14 82.8 108 50.0
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 2.8e-14 82.4 114 50.9
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 2.8e-14 82.4 110 50.0
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 4.8e-14 81.6 88 56.8
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 4.8e-14 81.6 81 60.5
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 6.3e-14 81.3 84 58.3
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 8.2e-14 80.9 91 52.7
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 1.1e-13 80.5 114 50.9
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 1.4e-13 80.1 102 47.1
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 2.4e-13 79.3 90 52.2
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 3.1e-13 79.0 94 55.3
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 3.1e-13 79.0 104 50.0
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 9.0e-13 77.4 81 60.5
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 3.4e-12 75.5 93 51.6
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 3.4e-12 75.5 102 47.1
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 4.5e-12 75.1 110 47.3
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 4.5e-12 75.1 61 60.7
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 7.6e-12 74.3 72 56.9
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 7.6e-12 74.3 114 46.5
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 1.0e-11 73.9 109 46.8
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 1.3e-11 73.6 84 51.2
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 1.7e-11 73.2 104 47.1
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 5.0e-11 71.6 110 44.5
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 5.0e-11 71.6 58 65.5
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 6.5e-11 71.2 84 53.6
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 6.5e-11 71.2 69 60.9
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 1.9e-10 69.7 85 52.9
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 1.9e-10 69.7 89 53.9
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 5.5e-10 68.2 48 68.8
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 5.5e-10 68.2 96 42.7
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 5.5e-10 68.2 100 45.0
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 5.5e-10 68.2 86 48.8
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 7.2e-10 67.8 71 54.9
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 9.3e-10 67.4 100 49.0
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 1.2e-09 67.0 94 47.9
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 1.6e-09 66.6 85 49.4
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 1.6e-09 66.6 85 49.4
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 1.6e-09 66.6 85 49.4
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 1.6e-09 66.6 101 45.5
Lalb_Chr15g0077801 Lupinus albus HOM05D007325 ORTHO05D009251 1.6e-09 66.6 90 48.9
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 6.1e-09 64.7 85 48.2
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 1.3e-08 63.5 96 43.8
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 1.8e-08 63.2 74 47.3
AL6G38400 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 2.3e-08 62.8 107 43.0
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 3.9e-08 62.0 85 49.4
AT5G26731 Arabidopsis thaliana HOM05D007325 ORTHO05D009251 3.9e-08 62.0 84 46.4
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 3.9e-08 62.0 85 45.9
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 3.9e-08 62.0 55 56.4
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 5.1e-08 61.6 72 48.6
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 8.7e-08 60.8 85 47.1
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 8.7e-08 60.8 85 47.1
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 8.7e-08 60.8 85 47.1
Oeu006910.1 Olea europaea HOM05D007325 ORTHO05D009251 8.7e-08 60.8 82 45.1
Psat0s4029g0040 Pisum sativum HOM05D007325 ORTHO05D009251 1.1e-07 60.5 91 44.0
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 1.5e-07 60.1 106 40.6
Sp2g21390 Schrenkiella parvula HOM05D007325 ORTHO05D009251 1.5e-07 60.1 93 43.0
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 1.9e-07 59.7 85 47.1
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 3.3e-07 58.9 69 50.7
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 3.3e-07 58.9 60 53.3
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 3.3e-07 58.9 82 53.7
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 4.3e-07 58.5 108 41.7
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 4.3e-07 58.5 68 52.9
BcaB04g19232 Brassica carinata HOM05D007325 ORTHO05D009251 5.7e-07 58.2 77 45.5
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 9.7e-07 57.4 76 47.4
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 1.3e-06 57.0 144 41.0
CARHR186980 Cardamine hirsuta HOM05D007325 ORTHO05D009251 2.2e-06 56.2 84 44.0
PGR031G0924 Punica granatum HOM05D007325 ORTHO05D009251 8.2e-06 54.3 80 46.2


User provided reference genes

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