Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 4.6e-116 421.8 308 100.0
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 2.1e-108 396.4 308 88.3
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.6e-108 395.2 308 88.0
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.6e-106 388.3 308 82.5
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.2e-101 372.1 308 91.6
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.1e-98 364.0 308 85.4
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 1.3e-86 323.9 305 71.5
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 8.7e-83 311.2 322 65.2
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 3.3e-82 309.3 307 67.1
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 1.6e-81 307.0 313 68.1
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 1.6e-81 307.0 308 67.5
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 3.7e-81 305.8 307 63.2
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 1.4e-80 303.9 307 67.8
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 1.4e-80 303.9 304 81.9
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 4.1e-80 302.4 309 65.4
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 3.4e-79 299.3 311 59.8
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 5.9e-79 298.5 307 64.5
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 5.9e-79 298.5 297 83.2
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 1.0e-78 297.7 308 61.4
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 2.2e-78 296.6 308 61.7
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 1.1e-77 294.3 308 65.6
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 2.5e-77 293.1 308 61.7
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 7.2e-77 291.6 308 64.9
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 7.2e-77 291.6 308 62.3
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 7.2e-77 291.6 308 63.0
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 2.1e-76 290.0 311 61.7
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 2.7e-76 289.7 310 66.5
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 2.7e-76 289.7 308 77.9
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.0e-75 287.7 308 77.6
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 8.8e-75 284.6 312 59.3
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.5e-74 283.1 309 63.4
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 1.3e-73 280.8 307 63.5
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 1.7e-73 280.4 311 57.2
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 2.8e-73 279.6 308 74.4
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 2.8e-73 279.6 307 73.9
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 4.8e-73 278.9 312 59.9
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 6.3e-73 278.5 311 60.1
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 8.2e-73 278.1 311 59.5
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.1e-72 277.7 307 54.4
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 1.1e-72 277.7 308 59.7
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 3.1e-72 276.2 281 62.3
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 4.1e-72 275.8 311 61.4
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 4.1e-72 275.8 311 57.6
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 9.1e-72 274.6 308 61.7
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 2.6e-71 273.1 322 54.7
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 1.7e-70 270.4 308 51.9
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 2.2e-70 270.0 308 60.7
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 3.8e-70 269.2 307 54.1
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 3.8e-70 269.2 310 56.1
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 5.0e-70 268.9 308 66.6
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 5.0e-70 268.9 336 67.9
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 6.5e-70 268.5 299 68.2
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 6.5e-70 268.5 310 71.0
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 6.5e-70 268.5 285 67.7
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 1.9e-69 266.9 310 55.8
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 7.2e-69 265.0 311 56.9
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 1.2e-68 264.2 313 58.5
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 1.6e-68 263.8 315 72.7
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 2.1e-68 263.5 346 57.8
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 2.7e-68 263.1 317 72.2
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 3.6e-68 262.7 307 72.3
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 3.6e-68 262.7 307 72.3
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 7.9e-68 261.5 308 59.7
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 2.3e-67 260.0 324 55.9
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 6.7e-67 258.5 276 54.3
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 6.7e-67 258.5 308 51.0
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 8.8e-67 258.1 308 55.2
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 8.8e-67 258.1 309 57.0
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 2.0e-66 256.9 307 59.3
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 2.0e-66 256.9 307 52.4
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 4.4e-66 255.8 311 74.3
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 2.2e-65 253.4 310 69.4
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 2.2e-65 253.4 302 56.3
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 3.1e-64 249.6 307 49.2
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 5.3e-64 248.8 254 65.0
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 1.2e-63 247.7 309 58.6
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 1.5e-63 247.3 326 57.4
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.5e-63 247.3 307 48.5
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 1.0e-62 244.6 304 52.6
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 2.2e-62 243.4 308 69.5
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 8.5e-62 241.5 294 53.1
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 1.4e-61 240.7 303 58.7
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.4e-61 240.7 309 58.3
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 9.4e-61 238.0 310 71.3
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 6.1e-60 235.3 308 69.2
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 3.9e-59 232.6 310 65.2
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 1.5e-58 230.7 310 62.6
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 1.5e-58 230.7 310 62.6
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 1.5e-58 230.7 310 62.6
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 1.5e-58 230.7 344 54.4
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 3.3e-58 229.6 309 57.0
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 3.3e-58 229.6 309 57.0
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 1.3e-57 227.6 288 51.0
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 1.7e-57 227.3 338 52.7
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 2.8e-57 226.5 344 54.4
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 3.7e-57 226.1 302 68.9
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 6.3e-57 225.3 309 65.4
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.4e-56 224.2 200 65.5
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 2.4e-56 223.4 224 65.2
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 4.1e-56 222.6 293 52.2
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 2.0e-55 220.3 300 53.0
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 3.8e-54 216.1 309 52.4
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 6.5e-54 215.3 366 55.2
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 5.7e-50 202.2 280 54.6
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 1.1e-48 198.0 278 64.0
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 1.8e-48 197.2 277 56.7
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.5e-47 192.6 189 53.4
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 6.5e-46 188.7 319 52.7
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 1.9e-37 160.6 273 40.3
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.8e-36 156.8 158 70.9
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.1e-32 144.8 189 46.0
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 7.8e-31 138.7 160 71.2
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 5.0e-30 136.0 105 67.6
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 1.7e-25 120.9 119 52.1
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.9e-25 120.2 80 73.8
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 3.7e-25 119.8 232 38.4
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.9e-24 117.5 186 38.7
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 3.5e-23 113.2 137 47.4
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 4.7e-20 102.8 135 59.3
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 7.5e-18 95.5 126 54.8
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 4.9e-17 92.8 134 51.5
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.5e-13 81.3 48 79.2
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 3.6e-12 76.6 46 71.7
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 4.7e-12 76.3 46 71.7
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 4.7e-12 76.3 56 76.8
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.4e-11 74.7 95 66.3
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 1.5e-10 71.2 91 57.1
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 9.9e-10 68.6 45 71.1
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 2.2e-09 67.4 43 72.1
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 2.2e-09 67.4 43 72.1
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.4e-08 64.7 30 90.0
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 2.1e-07 60.8 29 89.7
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 4.6e-07 59.7 59 54.2
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 5.1e-06 56.2 89 32.6
CDE12G0199 Ceratophyllum demersum HOM05D005384 ORTHO05D006477 6.6e-06 55.8 66 39.4


User provided reference genes

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