Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0458531 Rosa chinensis HOM05D006309 ORTHO05D007937 1.2e-51 206.1 97 100.0
FvH4_6g08490 Fragaria vesca HOM05D006309 ORTHO05D007937 5.2e-50 200.7 97 96.9
FAN02G0285 Fragaria x ananassa HOM05D006309 ORTHO05D007937 5.2e-50 200.7 97 96.9
FAN05G1622 Fragaria x ananassa HOM05D006309 ORTHO05D007937 5.2e-50 200.7 97 96.9
FAN09G1610 Fragaria x ananassa HOM05D006309 ORTHO05D007937 5.2e-50 200.7 97 96.9
FAN14G3239 Fragaria x ananassa HOM05D006309 ORTHO05D007937 5.2e-50 200.7 97 96.9
FvH4_2g19190 Fragaria vesca HOM05D006309 ORTHO05D007937 2.2e-48 195.3 97 94.8
FAN24G3038 Fragaria x ananassa HOM05D006309 ORTHO05D007937 2.2e-48 195.3 97 94.8
FAN15G2822 Fragaria x ananassa HOM05D006309 ORTHO05D007937 4.1e-47 191.0 97 92.8
MD12G1199900 Malus domestica HOM05D006309 ORTHO05D007937 1.6e-46 189.1 97 90.7
QL03p010963 Quercus lobata HOM05D006309 ORTHO05D007937 3.0e-45 184.9 95 89.5
Dinv24513 Davidia involucrata HOM05D006309 ORTHO05D007937 3.9e-45 184.5 97 88.7
Haze_03988 Corylus avellana HOM05D006309 ORTHO05D007937 1.5e-44 182.6 97 86.6
Prupe.6G304700 Prunus persica HOM05D006309 ORTHO05D007937 4.3e-44 181.0 97 85.6
Cpa.g.sc48.50 Carica papaya HOM05D006309 ORTHO05D007937 7.3e-44 180.3 97 85.6
Duzib205G1677 Durio zibethinus HOM05D006309 ORTHO05D007937 7.3e-44 180.3 97 85.6
Nn7g36656 Nelumbo nucifera HOM05D006309 ORTHO05D007937 7.3e-44 180.3 97 83.5
CiPaw.07G036200 Carya illinoinensis HOM05D006309 ORTHO05D007937 1.2e-43 179.5 97 84.5
CDE09G0003 Ceratophyllum demersum HOM05D006309 ORTHO05D007937 1.6e-43 179.1 94 83.0
Manes.09G181100 Manihot esculenta HOM05D006309 ORTHO05D007937 2.1e-43 178.7 94 86.2
CiPaw.04G111200 Carya illinoinensis HOM05D006309 ORTHO05D007937 2.8e-43 178.3 97 86.6
CSS0019637 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 3.6e-43 177.9 97 84.5
CSS0033999 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 3.6e-43 177.9 97 84.5
Rhsim11G0105200 Rhododendron simsii HOM05D006309 ORTHO05D007937 3.6e-43 177.9 97 84.5
Ciclev10013195m.g Citrus clementina HOM05D006309 ORTHO05D007937 4.7e-43 177.6 97 82.5
Cc02_g35850 Coffea canephora HOM05D006309 ORTHO05D007937 4.7e-43 177.6 97 82.5
Atru.chr12.1543 Acer truncatum HOM05D006309 ORTHO05D007937 1.1e-42 176.4 96 83.3
Rhsim11G0104500 Rhododendron simsii HOM05D006309 ORTHO05D007937 1.1e-42 176.4 97 82.5
CAN.G637.25 Capsicum annuum HOM05D006309 ORTHO05D007937 1.4e-42 176.0 94 86.2
ClCG02G014650 Citrullus lanatus HOM05D006309 ORTHO05D007937 1.8e-42 175.6 96 82.3
Lalb_Chr02g0147551 Lupinus albus HOM05D006309 ORTHO05D007937 1.8e-42 175.6 97 78.4
Lalb_Chr21g0310061 Lupinus albus HOM05D006309 ORTHO05D007937 2.4e-42 175.3 97 78.4
Oeu061901.1 Olea europaea HOM05D006309 ORTHO05D007937 2.4e-42 175.3 97 83.5
vmacro16416 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 2.4e-42 175.3 97 82.5
GSVIVG01031328001 Vitis vinifera HOM05D006309 ORTHO05D007937 2.4e-42 175.3 97 83.5
Ah.06g190700 Amaranthus hybridus HOM05D006309 ORTHO05D007937 3.1e-42 174.9 97 82.5
Solyc03g098120.3 Solanum lycopersicum HOM05D006309 ORTHO05D007937 3.1e-42 174.9 94 85.1
Sopen03g028820 Solanum pennellii HOM05D006309 ORTHO05D007937 3.1e-42 174.9 94 85.1
AUR62000475 Chenopodium quinoa HOM05D006309 ORTHO05D007937 4.0e-42 174.5 97 81.4
Nitab4.5_0000936g0050 Nicotiana tabacum HOM05D006309 ORTHO05D007937 4.0e-42 174.5 94 84.0
Sed0021183 Sechium edule HOM05D006309 ORTHO05D007937 4.0e-42 174.5 96 83.3
Hma1.2p1_0759F.1_g213920 Hydrangea macrophylla HOM05D006309 ORTHO05D007937 5.2e-42 174.1 93 84.9
Aqoxy2G02488 Aquilegia oxysepala HOM05D006309 ORTHO05D007937 6.9e-42 173.7 96 78.1
CANSAT54G2801 Cannabis sativa HOM05D006309 ORTHO05D007937 9.0e-42 173.3 97 83.5
Gohir.D08G174300 Gossypium hirsutum HOM05D006309 ORTHO05D007937 9.0e-42 173.3 96 83.3
Gorai.004G182000 Gossypium raimondii HOM05D006309 ORTHO05D007937 9.0e-42 173.3 96 83.3
Peaxi162Scf00171g00731 Petunia axillaris HOM05D006309 ORTHO05D007937 9.0e-42 173.3 94 83.0
PGSC0003DMG400031051 Solanum tuberosum HOM05D006309 ORTHO05D007937 9.0e-42 173.3 94 84.0
Nitab4.5_0004454g0020 Nicotiana tabacum HOM05D006309 ORTHO05D007937 1.2e-41 172.9 94 83.0
Hund05518 Selenicereus undatus HOM05D006309 ORTHO05D007937 1.2e-41 172.9 97 82.5
arahy.Tifrunner.gnm1.ann1.RC3JIS Arachis hypogaea HOM05D006309 ORTHO05D007937 1.5e-41 172.6 97 79.4
ECA233G1704 Erigeron canadensis HOM05D006309 ORTHO05D007937 1.5e-41 172.6 97 81.4
Thecc.03G310900 Theobroma cacao HOM05D006309 ORTHO05D007937 1.5e-41 172.6 97 81.4
Ca_10200_v3 Cicer arietinum L. HOM05D006309 ORTHO05D007937 2.0e-41 172.2 97 78.4
Gohir.A08G153400 Gossypium hirsutum HOM05D006309 ORTHO05D007937 2.0e-41 172.2 96 83.3
Psat6g155680 Pisum sativum HOM05D006309 ORTHO05D007937 2.0e-41 172.2 96 79.2
Medtr1g484930 Medicago truncatula HOM05D006309 ORTHO05D007937 2.6e-41 171.8 97 77.3
arahy.Tifrunner.gnm1.ann1.P9U7KY Arachis hypogaea HOM05D006309 ORTHO05D007937 3.4e-41 171.4 97 78.4
arahy.Tifrunner.gnm1.ann1.VGN228 Arachis hypogaea HOM05D006309 ORTHO05D007937 3.4e-41 171.4 97 78.4
Potri.005G002900 Populus trichocarpa HOM05D006309 ORTHO05D007937 3.4e-41 171.4 97 81.4
TAR636G2194 Trochodendron aralioides HOM05D006309 ORTHO05D007937 4.4e-41 171.0 95 81.1
AUR62017099 Chenopodium quinoa HOM05D006309 ORTHO05D007937 5.8e-41 170.6 93 82.8
VMungo0720G0633 Vigna mungo HOM05D006309 ORTHO05D007937 5.8e-41 170.6 96 80.2
PGR083G2709 Punica granatum HOM05D006309 ORTHO05D007937 7.6e-41 170.2 96 79.2
vmacro01669 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 7.6e-41 170.2 98 80.6
Migut.H01672 Erythranthe guttata HOM05D006309 ORTHO05D007937 1.3e-40 169.5 97 79.4
Phvul.007G205000 Phaseolus vulgaris HOM05D006309 ORTHO05D007937 1.3e-40 169.5 97 79.4
Sc16g0009400 Simmondsia chinensis HOM05D006309 ORTHO05D007937 1.3e-40 169.5 94 80.9
TWI36G0052 Tripterygium wilfordii HOM05D006309 ORTHO05D007937 1.3e-40 169.5 97 78.4
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 2.2e-40 168.7 96 78.1
unitig_62.g23615 Utricularia gibba HOM05D006309 ORTHO05D007937 2.2e-40 168.7 97 79.4
CARHR288700 Cardamine hirsuta HOM05D006309 ORTHO05D007937 3.8e-40 167.9 96 79.2
Carub.0002s0712 Capsella rubella HOM05D006309 ORTHO05D007937 4.9e-40 167.5 93 81.7
TPR.G2591 Trifolium pratense HOM05D006309 ORTHO05D007937 4.9e-40 167.5 97 74.2
BcaB07g31141 Brassica carinata HOM05D006309 ORTHO05D007937 8.4e-40 166.8 96 77.1
BcaC04g22081 Brassica carinata HOM05D006309 ORTHO05D007937 8.4e-40 166.8 96 77.1
C09p23680 Brassica napus HOM05D006309 ORTHO05D007937 8.4e-40 166.8 96 77.1
BraA09t37510Z Brassica rapa HOM05D006309 ORTHO05D007937 8.4e-40 166.8 96 77.1
Sp1g28800 Schrenkiella parvula HOM05D006309 ORTHO05D007937 8.4e-40 166.8 96 77.1
AT1G57540 Arabidopsis thaliana HOM05D006309 ORTHO05D007937 1.1e-39 166.4 96 78.1
EL10Ac4g09558 Beta vulgaris HOM05D006309 ORTHO05D007937 1.1e-39 166.4 95 82.1
A09p18900 Brassica napus HOM05D006309 ORTHO05D007937 1.1e-39 166.4 96 77.1
SalBow5G3054 Salvia bowleyana HOM05D006309 ORTHO05D007937 1.1e-39 166.4 97 79.4
Actinidia22855 Actinidia chinensis HOM05D006309 ORTHO05D007937 1.4e-39 166.0 96 78.1
Aa31LG2G11310 Aethionema arabicum HOM05D006309 ORTHO05D007937 1.4e-39 166.0 96 78.1
Sp2g05970 Schrenkiella parvula HOM05D006309 ORTHO05D007937 1.4e-39 166.0 96 76.0
Sc09g0002420 Simmondsia chinensis HOM05D006309 ORTHO05D007937 1.4e-39 166.0 97 76.3
BolC9t55290H Brassica oleracea HOM05D006309 ORTHO05D007937 1.9e-39 165.6 96 76.0
MELO3C004152.2 Cucumis melo HOM05D006309 ORTHO05D007937 1.9e-39 165.6 96 76.0
DCAR_007528 Daucus carota HOM05D006309 ORTHO05D007937 1.9e-39 165.6 112 72.3
Os01g0250600 Oryza sativa ssp. japonica HOM05D006309 ORTHO05D007937 1.9e-39 165.6 94 77.7
AL1G67090 Arabidopsis lyrata HOM05D006309 ORTHO05D007937 2.4e-39 165.2 93 79.6
Thhalv10010969m.g Eutrema salsugineum HOM05D006309 ORTHO05D007937 3.2e-39 164.9 96 77.1
Glyma.20G090800 Glycine max HOM05D006309 ORTHO05D007937 2.1e-38 162.2 93 76.3
Glyma.20G092200 Glycine max HOM05D006309 ORTHO05D007937 2.1e-38 162.2 93 76.3
Lj5g0003279 Lotus japonicus HOM05D006309 ORTHO05D007937 2.7e-38 161.8 93 78.5
THA.LOC104820476 Tarenaya hassleriana HOM05D006309 ORTHO05D007937 4.6e-38 161.0 93 75.3
HanXRQChr08g0212181 Helianthus annuus HOM05D006309 ORTHO05D007937 6.0e-38 160.6 91 79.1
ATR0796G010 Amborella trichopoda HOM05D006309 ORTHO05D007937 1.7e-37 159.1 94 77.7
CsaV3_2G007320 Cucumis sativus L. HOM05D006309 ORTHO05D007937 2.3e-37 158.7 96 75.0
PSO210G0390 Papaver somniferum HOM05D006309 ORTHO05D007937 2.3e-37 158.7 95 75.8
PSO761G0726 Papaver somniferum HOM05D006309 ORTHO05D007937 2.3e-37 158.7 95 75.8
Prupe.8G045300 Prunus persica HOM05D006309 ORTHO05D007937 5.1e-37 157.5 97 75.3
Cfa012394 Carpinus fangiana HOM05D006309 ORTHO05D007937 6.6e-37 157.1 84 85.7
Sabra13G0001700 Salix brachista HOM05D006309 ORTHO05D007937 8.7e-37 156.8 115 67.0
arahy.Tifrunner.gnm1.ann1.01IKZ7 Arachis hypogaea HOM05D006309 ORTHO05D007937 1.9e-36 155.6 130 59.2
Lj4g0016187 Lotus japonicus HOM05D006309 ORTHO05D007937 1.1e-34 149.8 97 71.1
SalBow4G0401 Salvia bowleyana HOM05D006309 ORTHO05D007937 1.1e-34 149.8 120 63.3
SalBow4G1963 Salvia bowleyana HOM05D006309 ORTHO05D007937 1.1e-34 149.8 120 63.3
SalBow4G2407 Salvia bowleyana HOM05D006309 ORTHO05D007937 1.1e-34 149.8 120 63.3
Sabra05G0000300 Salix brachista HOM05D006309 ORTHO05D007937 1.8e-34 149.1 140 55.7
Sabra05G0014400 Salix brachista HOM05D006309 ORTHO05D007937 1.8e-34 149.1 140 55.7
EL10Ac4g07573 Beta vulgaris HOM05D006309 ORTHO05D007937 2.9e-32 141.7 97 71.1
Dinv30948 Davidia involucrata HOM05D006309 ORTHO05D007937 7.9e-30 133.7 73 84.9
MBI18_g10373_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 1.0e-29 133.3 97 69.1
Mapoly0075s0044 Marchantia polymorpha HOM05D006309 ORTHO05D007937 1.3e-21 106.3 94 48.9
Pp3c8_1240 Physcomitrium patens HOM05D006309 ORTHO05D007937 1.9e-20 102.4 93 49.5
HanXRQChr06g0180851 Helianthus annuus HOM05D006309 ORTHO05D007937 6.2e-19 97.4 50 86.0
HanXRQChr16g0506271 Helianthus annuus HOM05D006309 ORTHO05D007937 6.2e-19 97.4 50 86.0
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 3.1e-18 95.1 49 85.7
Zm00001eb239560 Zea mays HOM05D006309 ORTHO05D007937 5.3e-18 94.4 50 82.0
COL.COLO4_16932 Corchorus olitorius HOM05D006309 ORTHO05D007937 1.1e-15 86.7 48 83.3
MBI06_g06498_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 1.4e-15 86.3 54 72.2
Glyma.09G093300 Glycine max HOM05D006309 ORTHO05D000504 4.2e-15 84.7 59 61.0
Potri.013G002301 Populus trichocarpa HOM05D006309 ORTHO05D007937 1.8e-10 69.3 41 78.0
BNapus_Darmor_BZH_scaffold_223p00020 Brassica napus HOM05D006309 ORTHO05D007937 4.1e-10 68.2 39 79.5


User provided reference genes

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