Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0458361 Rosa chinensis HOM05D006221 ORTHO05D007759 0.0e+00 1196.8 599 100.0
FvH4_6g08390 Fragaria vesca HOM05D006221 ORTHO05D007759 5.1e-289 997.3 604 85.3
FAN05G2605 Fragaria x ananassa HOM05D006221 ORTHO05D007759 5.7e-288 993.8 596 86.1
FAN02G1566 Fragaria x ananassa HOM05D006221 ORTHO05D007759 1.4e-281 972.6 581 86.2
Prupe.6G305800 Prunus persica HOM05D006221 ORTHO05D007759 1.9e-222 776.2 603 68.8
MD04G1187300 Malus domestica HOM05D006221 ORTHO05D007759 4.9e-215 751.5 603 64.8
QL03p010449 Quercus lobata HOM05D006221 ORTHO05D007759 2.6e-208 729.2 614 63.7
CiPaw.07G035200 Carya illinoinensis HOM05D006221 ORTHO05D007759 4.6e-205 718.4 563 67.5
Haze_03998 Corylus avellana HOM05D006221 ORTHO05D007759 4.5e-200 701.8 648 61.7
Manes.09G180400 Manihot esculenta HOM05D006221 ORTHO05D007759 1.2e-197 693.7 602 62.8
TWI38G0202 Tripterygium wilfordii HOM05D006221 ORTHO05D007759 5.7e-195 684.9 592 62.5
GSVIVG01031316001 Vitis vinifera HOM05D006221 ORTHO05D007759 7.4e-195 684.5 597 60.6
Atru.chr12.1555 Acer truncatum HOM05D006221 ORTHO05D007759 4.8e-194 681.8 594 61.8
Sed0012716 Sechium edule HOM05D006221 ORTHO05D007759 4.0e-193 678.7 622 59.8
Ciclev10011303m.g Citrus clementina HOM05D006221 ORTHO05D007759 4.5e-192 675.2 608 60.7
CANSAT54G2840 Cannabis sativa HOM05D006221 ORTHO05D007759 1.1e-190 670.6 584 61.0
CsaV3_1G038010 Cucumis sativus L. HOM05D006221 ORTHO05D007759 1.9e-190 669.8 628 59.7
Dinv30939 Davidia involucrata HOM05D006221 ORTHO05D007759 1.2e-189 667.2 597 62.5
Sabra05G0000700 Salix brachista HOM05D006221 ORTHO05D007759 6.7e-188 661.4 570 62.8
Thecc.05G328800 Theobroma cacao HOM05D006221 ORTHO05D007759 6.7e-188 661.4 588 61.2
Sabra05G0014800 Salix brachista HOM05D006221 ORTHO05D007759 1.9e-187 659.8 570 62.6
Duzib177G0418 Durio zibethinus HOM05D006221 ORTHO05D007759 1.3e-186 657.1 577 61.7
Potri.005G003400 Populus trichocarpa HOM05D006221 ORTHO05D007759 2.2e-186 656.4 590 60.5
Glyma.19G226000 Glycine max HOM05D006221 ORTHO05D007759 6.9e-185 651.4 597 59.0
Eucgr.B01816 Eucalyptus grandis HOM05D006221 ORTHO05D007759 9.0e-185 651.0 587 60.6
PGR083G2161 Punica granatum HOM05D006221 ORTHO05D007759 1.5e-184 650.2 609 60.3
Gohir.A13G113400 Gossypium hirsutum HOM05D006221 ORTHO05D007759 5.9e-184 648.3 594 60.1
Actinidia11678 Actinidia chinensis HOM05D006221 ORTHO05D007759 3.8e-183 645.6 572 61.7
Lj1g0008157 Lotus japonicus HOM05D006221 ORTHO05D007759 8.5e-183 644.4 598 58.7
TPR.G1625 Trifolium pratense HOM05D006221 ORTHO05D007759 1.1e-182 644.0 601 58.2
Ca_09279_v3 Cicer arietinum L. HOM05D006221 ORTHO05D007759 1.4e-182 643.7 602 59.0
Gohir.D13G116600 Gossypium hirsutum HOM05D006221 ORTHO05D007759 1.9e-182 643.3 594 59.8
Lju99A6T47 Lonicera japonica HOM05D006221 ORTHO05D007759 4.2e-182 642.1 574 61.0
Gorai.013G131100 Gossypium raimondii HOM05D006221 ORTHO05D007759 1.2e-181 640.6 604 59.3
ClCG03G017850 Citrullus lanatus HOM05D006221 ORTHO05D007759 3.9e-180 635.6 605 59.7
arahy.Tifrunner.gnm1.ann1.CKL802 Arachis hypogaea HOM05D006221 ORTHO05D007759 5.1e-180 635.2 598 57.9
Oeu016545.1 Olea europaea HOM05D006221 ORTHO05D007759 8.8e-180 634.4 544 61.8
Lalb_Chr18g0046191 Lupinus albus HOM05D006221 ORTHO05D007759 1.1e-179 634.0 606 57.8
Psat3g014840 Pisum sativum HOM05D006221 ORTHO05D007759 4.3e-179 632.1 555 60.5
VMungo1383G1939 Vigna mungo HOM05D006221 ORTHO05D007759 2.8e-178 629.4 597 57.1
Phvul.001G222600 Phaseolus vulgaris HOM05D006221 ORTHO05D007759 6.3e-178 628.2 597 56.8
Hma1.2p1_0052F.1_g030430 Hydrangea macrophylla HOM05D006221 ORTHO05D007759 4.1e-177 625.5 597 58.8
Medtr7g111610 Medicago truncatula HOM05D006221 ORTHO05D007759 5.3e-177 625.2 610 56.1
FAN09G0827 Fragaria x ananassa HOM05D006221 ORTHO05D007759 1.5e-176 623.6 501 70.5
MSTRG.16421 Avicennia marina HOM05D006221 ORTHO05D007759 2.6e-176 622.9 594 58.1
THA.LOC104816844 Tarenaya hassleriana HOM05D006221 ORTHO05D007759 3.4e-176 622.5 591 59.6
Solyc01g101110.3 Solanum lycopersicum HOM05D006221 ORTHO05D007759 5.9e-176 621.7 593 57.8
Sopen01g044560 Solanum pennellii HOM05D006221 ORTHO05D007759 1.3e-175 620.5 602 57.1
Nn3g21902 Nelumbo nucifera HOM05D006221 ORTHO05D007759 8.5e-175 617.8 587 59.8
Migut.B00875 Erythranthe guttata HOM05D006221 ORTHO05D007759 1.9e-174 616.7 599 58.6
vmacro01605 Vaccinium macrocarpon HOM05D006221 ORTHO05D007759 7.9e-173 611.3 638 55.2
Cc02_g35760 Coffea canephora HOM05D006221 ORTHO05D007759 1.4e-172 610.5 633 55.5
arahy.Tifrunner.gnm1.ann1.7121P0 Arachis hypogaea HOM05D006221 ORTHO05D007759 6.7e-172 608.2 598 56.7
ECA236G2609 Erigeron canadensis HOM05D006221 ORTHO05D007759 2.0e-168 596.7 580 56.6
Rhsim11G0101500 Rhododendron simsii HOM05D006221 ORTHO05D007759 3.2e-166 589.3 713 50.5
AUR62006807 Chenopodium quinoa HOM05D006221 ORTHO05D007759 5.5e-166 588.6 596 56.0
Sc16g0009350 Simmondsia chinensis HOM05D006221 ORTHO05D007759 3.6e-165 585.9 598 55.5
AT1G09450 Arabidopsis thaliana HOM05D006221 ORTHO05D007759 5.7e-163 578.6 593 55.8
AUR62000466 Chenopodium quinoa HOM05D006221 ORTHO05D007759 5.7e-163 578.6 592 55.7
SalBow5G5479 Salvia bowleyana HOM05D006221 ORTHO05D007759 4.8e-162 575.5 629 53.6
BraA08t35366Z Brassica rapa HOM05D006221 ORTHO05D007759 6.3e-162 575.1 601 55.2
MBI19_g32730_MAGBIO Magnolia biondii HOM05D006221 ORTHO05D007759 1.1e-161 574.3 612 54.7
Thhalv10007117m.g Eutrema salsugineum HOM05D006221 ORTHO05D007759 1.4e-161 573.9 598 55.7
CARHR009420 Cardamine hirsuta HOM05D006221 ORTHO05D007759 2.4e-161 573.2 598 54.5
PSO210G0944 Papaver somniferum HOM05D006221 ORTHO05D007759 4.1e-161 572.4 608 53.8
SGA_v2.0_scaffold671G53422 Striga asiatica HOM05D006221 ORTHO05D007759 4.1e-161 572.4 644 52.8
Aqoxy2G02530 Aquilegia oxysepala HOM05D006221 ORTHO05D007759 7.0e-161 571.6 565 55.4
Sp1g08060 Schrenkiella parvula HOM05D006221 ORTHO05D007759 9.1e-161 571.2 608 54.9
HanXRQChr14g0449401 Helianthus annuus HOM05D006221 ORTHO05D007759 2.0e-160 570.1 591 55.3
BcaB03g13298 Brassica carinata HOM05D006221 ORTHO05D007759 2.6e-160 569.7 607 54.0
Carub.0001s0880 Capsella rubella HOM05D006221 ORTHO05D007759 3.5e-160 569.3 593 55.5
DCAR_005251 Daucus carota HOM05D006221 ORTHO05D007759 5.9e-160 568.5 604 53.6
C08p12920 Brassica napus HOM05D006221 ORTHO05D007759 1.0e-159 567.8 606 54.1
AL1G19970 Arabidopsis lyrata HOM05D006221 ORTHO05D007759 2.9e-159 566.2 593 55.1
Aa31LG1G5650 Aethionema arabicum HOM05D006221 ORTHO05D007759 5.0e-159 565.5 618 52.8
Hund07280 Selenicereus undatus HOM05D006221 ORTHO05D007759 6.5e-159 565.1 535 57.6
A08p34550 Brassica napus HOM05D006221 ORTHO05D007759 2.5e-158 563.1 604 54.3
PSO761G0564 Papaver somniferum HOM05D006221 ORTHO05D007759 4.2e-158 562.4 608 53.5
EL10Ac4g09547 Beta vulgaris HOM05D006221 ORTHO05D007759 7.2e-158 561.6 594 53.9
BolC8t48922H Brassica oleracea HOM05D006221 ORTHO05D007759 3.6e-157 559.3 618 53.1
Hund07275 Selenicereus undatus HOM05D006221 ORTHO05D007759 5.7e-155 552.0 582 53.8
Peaxi162Scf00357g00116 Petunia axillaris HOM05D006221 ORTHO05D007759 7.5e-155 551.6 596 52.9
Lsat_1_v5_gn_9_77141 Lactuca sativa HOM05D006221 ORTHO05D007759 1.8e-153 547.0 542 55.7
BcaC07g38511 Brassica carinata HOM05D006221 ORTHO05D007759 4.1e-153 545.8 590 53.6
CAN.G1248.26 Capsicum annuum HOM05D006221 ORTHO05D007759 1.0e-148 531.2 632 50.3
Nitab4.5_0014566g0010 Nicotiana tabacum HOM05D006221 ORTHO05D007759 2.6e-147 526.6 605 51.9
PGSC0003DMG400018290 Solanum tuberosum HOM05D006221 ORTHO05D007759 9.1e-145 518.1 593 51.1
Nitab4.5_0001931g0080 Nicotiana tabacum HOM05D006221 ORTHO05D007759 2.3e-143 513.5 546 52.4
Dinv30938 Davidia involucrata HOM05D006221 ORTHO05D007759 4.2e-142 509.2 416 65.4
HPP92_001185 Vanilla planifolia HOM05D006221 ORTHO05D007759 1.1e-137 494.6 656 45.3
Hma1.2p1_0052F.1_g030440 Hydrangea macrophylla HOM05D006221 ORTHO05D007759 1.2e-136 491.1 475 57.9
PSO017G3773 Papaver somniferum HOM05D006221 ORTHO05D007759 4.6e-136 489.2 507 54.0
unitig_699.g19069 Utricularia gibba HOM05D006221 ORTHO05D007759 1.0e-135 488.0 597 49.6
Potri.013G003600 Populus trichocarpa HOM05D006221 ORTHO05D007759 8.6e-135 485.0 408 62.7
Zm00001eb109970 Zea mays HOM05D006221 ORTHO05D007759 1.9e-126 457.2 599 48.1
SHI18018 Sapria himalayana HOM05D006221 ORTHO05D007759 5.8e-123 445.7 504 52.2
ATR0796G167 Amborella trichopoda HOM05D006221 ORTHO05D007759 1.7e-119 434.1 618 45.5
MELO3C015244.2 Cucumis melo HOM05D006221 ORTHO05D007759 7.8e-112 408.7 360 60.6
SEGI_23402 Sequoiadendron giganteum HOM05D006221 ORTHO05D007759 1.6e-109 401.0 345 58.6
Ah.10g026960 Amaranthus hybridus HOM05D006221 ORTHO05D007759 3.3e-102 376.7 418 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2896 Anthoceros agrestis HOM05D006221 ORTHO05D007759 2.1e-101 374.0 381 51.2
Pp3c5_21110 Physcomitrium patens HOM05D006221 ORTHO05D007759 2.0e-99 367.5 354 52.0
CDE08G0155 Ceratophyllum demersum HOM05D006221 ORTHO05D007759 8.7e-95 352.1 550 42.0
Mapoly0101s0065 Marchantia polymorpha HOM05D006221 ORTHO05D007759 7.4e-94 349.0 362 50.3
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 9.3e-89 332.0 438 49.5
CBR_g46893 Chara braunii HOM05D006221 ORTHO05D007759 2.3e-79 300.8 358 44.7
COL.COLO4_05510 Corchorus olitorius HOM05D006221 ORTHO05D007759 3.6e-64 250.4 610 34.4
SMO169G0298 Selaginella moellendorffii HOM05D006221 ORTHO05D007759 5.9e-59 233.0 226 50.4
Cpa.g.sc48.218 Carica papaya HOM05D006221 ORTHO05D007759 1.2e-56 225.3 516 34.1
Glyma.03G228700 Glycine max HOM05D006221 ORTHO05D007759 1.7e-53 214.9 147 70.7
Cre02.g108000 Chlamydomonas reinhardtii HOM05D006221 ORTHO05D007759 4.7e-48 196.8 287 39.7
MCO05G201 Micromonas commoda HOM05D006221 ORTHO05D007759 8.0e-40 169.5 174 52.3
Lj9A230T20 Lonicera japonica HOM05D006221 ORTHO05D007759 8.5e-34 149.4 253 38.7
PRCOL_00002024 Prasinoderma coloniale HOM05D006221 ORTHO05D007759 8.8e-31 139.4 195 39.5
Nn5g27477 Nelumbo nucifera HOM05D001388 ORTHO05D001234 1.7e-26 125.2 105 61.9
Actinidia16908 Actinidia chinensis HOM05D006221 ORTHO05D007759 2.9e-26 124.4 172 47.7
FvH4_1g12820 Fragaria vesca HOM05D006221 ORTHO05D007759 1.0e-15 89.4 89 58.4
PRCOL_00002025 Prasinoderma coloniale HOM05D006221 ORTHO05D007759 3.4e-14 84.3 155 36.8
C09p35620 Brassica napus HOM05D006221 ORTHO05D007759 2.9e-13 81.3 63 58.7
BolC9t56398H Brassica oleracea HOM05D006221 ORTHO05D007759 2.9e-13 81.3 63 58.7
PSO170G3396 Papaver somniferum HOM05D000502 ORTHO05D000356 6.2e-08 63.5 105 41.9


User provided reference genes

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