Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 1.6e-51 205.7 98 100.0
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 5.9e-17 90.9 51 88.2
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 1.3e-16 89.7 51 86.3
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 2.2e-16 89.0 50 84.0
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 3.8e-16 88.2 55 80.0
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 8.5e-16 87.0 51 84.3
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 8.5e-16 87.0 51 84.3
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 8.5e-16 87.0 51 84.3
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 8.5e-16 87.0 51 84.3
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 8.5e-16 87.0 51 84.3
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.9e-15 85.9 67 65.7
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 3.2e-15 85.1 51 80.4
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 3.2e-15 85.1 51 80.4
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 4.2e-15 84.7 54 77.8
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 5.5e-15 84.3 51 80.4
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 5.5e-15 84.3 51 82.4
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 7.2e-15 84.0 51 80.4
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 7.2e-15 84.0 51 78.4
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 7.2e-15 84.0 51 78.4
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 9.4e-15 83.6 51 82.4
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 9.4e-15 83.6 51 80.4
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 9.4e-15 83.6 51 80.4
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 1.2e-14 83.2 51 78.4
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 1.2e-14 83.2 51 78.4
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 1.2e-14 83.2 53 77.4
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 1.6e-14 82.8 51 80.4
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 1.6e-14 82.8 51 80.4
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 1.6e-14 82.8 54 75.9
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.1e-14 82.4 51 78.4
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 2.1e-14 82.4 51 78.4
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 2.1e-14 82.4 51 78.4
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 2.1e-14 82.4 51 78.4
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 2.1e-14 82.4 51 78.4
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 2.1e-14 82.4 51 76.5
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 2.1e-14 82.4 51 80.4
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 2.1e-14 82.4 51 80.4
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 2.1e-14 82.4 51 80.4
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 2.1e-14 82.4 51 80.4
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 2.7e-14 82.0 51 80.4
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 2.7e-14 82.0 51 78.4
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 2.7e-14 82.0 51 78.4
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 2.7e-14 82.0 51 78.4
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 3.6e-14 81.6 51 78.4
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 4.7e-14 81.3 51 78.4
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 4.7e-14 81.3 54 75.9
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 4.7e-14 81.3 51 78.4
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 4.7e-14 81.3 51 78.4
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 4.7e-14 81.3 51 78.4
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 6.1e-14 80.9 61 68.9
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 6.1e-14 80.9 51 76.5
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 6.1e-14 80.9 51 78.4
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 6.1e-14 80.9 51 78.4
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 8.0e-14 80.5 49 79.6
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 8.0e-14 80.5 51 74.5
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 8.0e-14 80.5 51 76.5
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 8.0e-14 80.5 51 76.5
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 8.0e-14 80.5 51 76.5
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 8.0e-14 80.5 51 78.4
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 8.0e-14 80.5 51 78.4
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 8.0e-14 80.5 51 76.5
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 8.0e-14 80.5 49 79.6
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 8.0e-14 80.5 51 74.5
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 1.0e-13 80.1 51 76.5
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 1.0e-13 80.1 51 78.4
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 1.0e-13 80.1 51 76.5
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.0e-13 80.1 51 76.5
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 1.0e-13 80.1 49 81.6
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 1.0e-13 80.1 49 81.6
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 1.0e-13 80.1 51 76.5
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.0e-13 80.1 51 76.5
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 1.4e-13 79.7 51 74.5
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.4e-13 79.7 51 76.5
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 1.4e-13 79.7 51 78.4
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 1.4e-13 79.7 51 76.5
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 1.4e-13 79.7 51 76.5
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 1.4e-13 79.7 51 74.5
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.4e-13 79.7 51 76.5
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 1.8e-13 79.3 52 75.0
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 1.8e-13 79.3 51 76.5
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 1.8e-13 79.3 51 76.5
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 2.3e-13 79.0 51 76.5
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 2.3e-13 79.0 52 71.2
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 3.0e-13 78.6 48 79.2
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 3.0e-13 78.6 48 79.2
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 3.0e-13 78.6 48 79.2
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 3.0e-13 78.6 48 79.2
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 3.0e-13 78.6 48 79.2
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 3.0e-13 78.6 51 76.5
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 3.0e-13 78.6 51 76.5
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 3.0e-13 78.6 51 76.5
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 3.0e-13 78.6 49 79.6
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 3.0e-13 78.6 51 74.5
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 3.0e-13 78.6 51 74.5
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 3.0e-13 78.6 51 74.5
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 4.0e-13 78.2 51 72.5
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 4.0e-13 78.2 51 74.5
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 5.2e-13 77.8 51 76.5
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 5.2e-13 77.8 51 74.5
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 5.2e-13 77.8 51 74.5
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 5.2e-13 77.8 54 70.4
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 6.8e-13 77.4 51 72.5
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 8.8e-13 77.0 51 74.5
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 8.8e-13 77.0 51 74.5
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 8.8e-13 77.0 51 78.4
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 8.8e-13 77.0 51 72.5
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 8.8e-13 77.0 51 72.5
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 1.2e-12 76.6 51 76.5
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 1.2e-12 76.6 51 74.5
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 1.5e-12 76.3 50 72.0
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 1.5e-12 76.3 51 74.5
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.5e-12 76.3 51 74.5
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 2.0e-12 75.9 51 70.6
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 2.6e-12 75.5 51 70.6
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 5.7e-12 74.3 49 73.5
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 5.7e-12 74.3 52 67.3
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 5.7e-12 74.3 51 72.5
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 7.5e-12 73.9 51 70.6
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 7.5e-12 73.9 51 70.6
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 9.8e-12 73.6 48 75.0
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 1.3e-11 73.2 51 72.5
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 1.3e-11 73.2 51 72.5
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 2.2e-11 72.4 51 66.7
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.8e-11 72.0 49 71.4
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 4.8e-11 71.2 50 66.0
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.1e-10 70.1 59 62.7
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 1.8e-10 69.3 51 62.7
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 3.1e-10 68.6 50 66.0
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 3.1e-10 68.6 50 64.0
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 2.7e-09 65.5 48 64.6
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 2.7e-09 65.5 45 71.1
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 7.7e-09 63.9 59 49.2
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 2.2e-08 62.4 48 60.4
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 3.8e-08 61.6 51 58.8
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 3.8e-08 61.6 49 57.1
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.6e-06 56.2 51 49.0


User provided reference genes

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