Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 3.3e-171 605.1 348 100.0
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.7e-114 416.8 310 80.0
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 2.4e-113 412.9 310 79.7
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 5.6e-110 401.7 325 75.1
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 7.5e-99 364.8 317 71.6
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.1e-97 360.9 247 84.2
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 3.1e-92 342.8 224 76.8
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 8.6e-87 324.7 228 73.7
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 1.1e-84 317.8 228 72.8
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 1.4e-84 317.4 225 73.8
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 4.0e-84 315.8 224 72.8
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 1.2e-83 314.3 230 69.6
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 1.2e-83 314.3 222 73.4
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 3.4e-83 312.8 227 70.5
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 4.4e-83 312.4 212 73.6
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 7.6e-83 311.6 303 60.1
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 7.6e-83 311.6 222 70.3
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.3e-82 310.8 235 69.4
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 2.2e-82 310.1 235 68.9
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 6.4e-82 308.5 236 70.3
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 2.1e-80 303.5 226 68.6
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 3.5e-80 302.8 222 69.4
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 7.8e-80 301.6 236 66.5
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 1.7e-79 300.4 225 68.0
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 2.3e-79 300.1 236 66.5
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 8.6e-79 298.1 223 69.5
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 4.3e-78 295.8 226 66.4
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 4.3e-78 295.8 241 64.7
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 9.6e-78 294.7 205 72.7
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 2.1e-77 293.5 214 70.1
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 2.1e-77 293.5 227 67.0
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 2.1e-77 293.5 198 72.7
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 3.6e-77 292.7 228 68.0
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 4.7e-77 292.4 225 66.7
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 6.2e-77 292.0 237 65.0
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 1.4e-76 290.8 206 72.8
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 1.8e-76 290.4 205 70.7
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 3.1e-76 289.7 226 67.3
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 2.6e-75 286.6 224 67.4
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 2.6e-75 286.6 242 64.0
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 3.4e-75 286.2 237 63.3
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 1.3e-74 284.3 204 71.1
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 3.8e-74 282.7 212 67.5
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 8.4e-74 281.6 215 66.5
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 1.2e-72 277.7 213 66.7
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.7e-72 276.6 226 62.8
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 6.0e-72 275.4 224 62.5
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 7.8e-72 275.0 217 65.0
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 1.7e-71 273.9 199 70.4
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 1.7e-71 273.9 227 61.2
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 2.3e-71 273.5 223 62.8
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 2.3e-71 273.5 204 69.1
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 2.3e-71 273.5 227 62.6
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 8.7e-71 271.6 222 60.8
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 8.7e-71 271.6 206 68.9
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 1.1e-70 271.2 224 62.9
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.5e-70 270.8 216 66.2
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 3.3e-70 269.6 202 64.9
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 3.3e-70 269.6 234 61.5
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 4.3e-70 269.2 204 66.2
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 9.6e-70 268.1 213 64.3
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 1.3e-69 267.7 186 69.9
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 1.6e-69 267.3 227 63.0
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 2.8e-69 266.5 228 63.6
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 3.6e-69 266.2 223 63.2
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 4.8e-69 265.8 202 61.9
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 6.9e-68 261.9 211 63.0
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 5.8e-67 258.8 213 60.6
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 7.6e-67 258.5 214 60.7
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 9.9e-67 258.1 228 60.1
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 9.9e-67 258.1 223 61.9
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 1.7e-66 257.3 222 59.5
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 3.8e-66 256.1 221 58.8
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 4.9e-66 255.8 237 57.0
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 1.1e-65 254.6 225 62.7
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 1.9e-65 253.8 224 56.7
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 2.4e-65 253.4 224 57.6
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 7.1e-65 251.9 197 60.9
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 9.3e-65 251.5 224 57.6
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 2.1e-64 250.4 200 62.0
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 4.6e-64 249.2 199 62.3
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 4.6e-64 249.2 241 56.8
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 1.9e-62 243.8 222 59.5
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 2.5e-62 243.4 228 59.2
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 2.5e-62 243.4 203 63.1
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 4.3e-62 242.7 247 53.8
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 1.3e-61 241.1 228 56.6
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 3.6e-61 239.6 218 57.8
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 8.1e-61 238.4 225 59.1
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 1.8e-60 237.3 203 57.1
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 2.6e-59 233.4 230 56.1
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 4.5e-59 232.6 222 54.5
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 1.1e-57 228.0 205 57.1
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.4e-57 227.6 225 56.9
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.4e-57 227.6 225 56.9
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 1.4e-57 227.6 180 63.9
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 4.2e-57 226.1 202 55.9
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 2.1e-56 223.8 205 57.6
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 7.9e-56 221.9 248 50.0
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.0e-55 221.5 221 52.9
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 1.0e-55 221.5 197 57.9
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 1.1e-54 218.0 170 65.9
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 2.5e-54 216.9 174 60.3
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 3.3e-54 216.5 241 49.0
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 7.4e-54 215.3 201 53.7
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 1.3e-53 214.5 199 56.8
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.1e-53 213.8 201 53.2
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 3.7e-53 213.0 197 56.9
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 8.1e-53 211.8 197 56.3
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 2.4e-52 210.3 145 71.7
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 6.9e-52 208.8 193 58.5
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 6.9e-52 208.8 219 51.6
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 6.9e-52 208.8 219 51.6
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 9.0e-52 208.4 224 50.0
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 2.0e-51 207.2 237 48.9
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 7.6e-51 205.3 203 51.7
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 8.4e-50 201.8 219 50.2
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 1.4e-49 201.1 223 47.1
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 1.4e-49 201.1 150 66.7
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 2.5e-49 200.3 200 52.0
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 9.3e-49 198.4 228 50.4
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 9.3e-49 198.4 228 50.4
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 2.1e-48 197.2 195 51.3
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 3.5e-48 196.4 214 52.8
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 1.3e-47 194.5 223 45.7
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 3.0e-47 193.4 221 47.5
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 1.5e-46 191.0 189 48.1
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.1e-45 187.2 205 47.3
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.1e-45 187.2 205 47.3
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 2.1e-45 187.2 205 47.3
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.7e-45 186.4 205 47.3
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 3.7e-45 186.4 202 51.5
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 6.3e-45 185.7 193 52.3
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 3.1e-44 183.3 203 48.8
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 1.2e-43 181.4 215 50.2
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.5e-43 181.0 202 46.0
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.5e-43 181.0 202 46.0
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 7.6e-43 178.7 234 47.4
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 5.0e-42 176.0 139 64.7
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 5.0e-42 176.0 190 47.4
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 2.5e-41 173.7 195 49.7
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 5.5e-41 172.6 191 45.5
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 4.6e-40 169.5 223 44.4
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 7.9e-40 168.7 174 55.2
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 1.3e-39 167.9 220 44.5
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 7.4e-38 162.2 129 66.7
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.2e-37 160.6 206 42.7
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 2.8e-37 160.2 194 47.4
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 2.8e-37 160.2 214 40.2
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 1.1e-36 158.3 206 42.2
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 2.4e-36 157.1 199 43.2
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.2e-35 154.8 200 42.5
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 3.4e-35 153.3 154 50.6
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 7.7e-35 152.1 166 51.8
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.3e-34 151.4 190 44.2
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 3.2e-33 146.7 197 40.6
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 1.8e-31 141.0 127 59.8
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 6.1e-24 115.9 168 39.9
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 2.3e-23 114.0 191 39.3
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.1e-22 111.7 152 40.8
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 9.1e-20 102.1 90 58.9
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 2.2e-18 97.4 84 61.9
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 5.0e-18 96.3 90 61.1
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 2.5e-17 94.0 75 69.3
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 3.6e-16 90.1 157 36.3
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.6e-14 84.0 69 69.6
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 3.3e-14 83.6 67 65.7
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 2.2e-13 80.9 63 65.1
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 2.5e-09 67.4 229 21.4


User provided reference genes

Program Settings