Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 8.5e-207 723.4 357 100.0
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.2e-139 500.4 357 71.7
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 5.3e-132 474.9 361 69.0
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.5e-131 471.9 360 68.1
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.9e-131 471.5 364 68.1
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.9e-130 469.2 366 68.0
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 7.0e-108 394.8 323 65.3
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 3.8e-106 389.0 329 63.2
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 8.5e-106 387.9 318 65.1
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.1e-105 387.5 329 62.9
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.9e-105 386.7 329 63.5
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 3.2e-105 386.0 321 62.6
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 6.1e-104 381.7 323 63.8
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 3.0e-103 379.4 327 61.8
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.0e-103 379.0 317 63.7
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 4.0e-103 379.0 369 57.5
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 6.7e-103 378.3 322 61.5
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 2.6e-102 376.3 324 61.4
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 3.7e-101 372.5 322 61.2
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 4.8e-101 372.1 321 62.0
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 8.2e-101 371.3 318 61.3
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 2.4e-100 369.8 335 60.6
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 4.1e-100 369.0 322 61.2
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 4.1e-100 369.0 322 60.9
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 5.3e-100 368.6 318 61.3
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 7.0e-100 368.2 328 60.7
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 7.0e-100 368.2 314 60.5
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 7.0e-100 368.2 325 59.1
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.6e-99 367.1 322 59.3
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 2.7e-99 366.3 320 60.6
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.7e-99 366.3 325 58.5
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 2.7e-99 366.3 325 58.5
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 4.5e-99 365.5 319 60.2
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 4.5e-99 365.5 325 58.5
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 2.2e-98 363.2 319 58.9
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 2.9e-98 362.8 320 59.1
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 5.0e-98 362.1 310 62.9
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 8.5e-98 361.3 321 59.8
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 8.5e-98 361.3 324 60.8
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 1.5e-97 360.5 314 60.5
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 1.9e-97 360.1 329 58.1
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 2.5e-97 359.8 296 63.9
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 3.2e-97 359.4 360 56.1
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 3.2e-97 359.4 323 58.8
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.2e-97 359.4 319 60.2
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 3.2e-97 359.4 320 58.4
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 3.2e-97 359.4 334 58.4
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 4.2e-97 359.0 323 58.5
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 7.2e-97 358.2 331 58.0
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 9.4e-97 357.8 337 59.1
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.6e-96 357.1 320 58.4
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 2.1e-96 356.7 320 58.4
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 8.0e-96 354.8 320 58.8
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 8.0e-96 354.8 329 56.2
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 2.3e-95 353.2 333 56.8
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 3.0e-95 352.8 371 52.3
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 4.0e-95 352.4 311 58.5
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 5.2e-95 352.1 327 59.9
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 1.2e-94 350.9 384 51.0
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 1.2e-94 350.9 327 59.3
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.5e-94 350.5 346 56.1
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.5e-94 350.5 346 56.1
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 2.0e-94 350.1 302 62.6
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 2.0e-94 350.1 319 58.6
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 3.4e-94 349.4 325 58.8
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.3e-93 347.4 312 58.0
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 2.8e-93 346.3 313 57.8
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.8e-93 346.3 312 58.0
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.8e-93 346.3 312 58.0
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 3.7e-93 345.9 323 57.0
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 3.7e-93 345.9 328 56.7
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 4.8e-93 345.5 316 58.5
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 3.1e-92 342.8 313 57.2
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 3.1e-92 342.8 313 57.2
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 3.1e-92 342.8 313 58.1
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 5.4e-92 342.0 311 57.9
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 7.0e-92 341.7 327 57.8
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.2e-91 340.9 326 57.7
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.2e-91 340.9 339 55.2
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.6e-91 340.5 353 54.4
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 3.5e-91 339.3 314 56.1
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 5.9e-91 338.6 321 56.1
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 1.7e-90 337.0 314 55.7
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 1.7e-90 337.0 314 56.1
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 3.8e-90 335.9 323 57.9
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 5.0e-90 335.5 311 57.6
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 5.5e-89 332.0 314 57.6
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 2.8e-88 329.7 308 58.1
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 4.7e-88 328.9 304 58.2
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 6.1e-88 328.6 317 57.4
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 4.0e-87 325.9 271 62.4
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.5e-86 323.9 265 61.5
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 3.4e-86 322.8 323 52.9
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 4.9e-85 318.9 324 52.8
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 6.3e-85 318.5 285 61.4
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.4e-84 317.4 321 54.5
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 1.8e-84 317.0 333 54.4
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 4.1e-84 315.8 312 52.9
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.6e-83 313.9 266 62.4
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.6e-83 313.9 295 58.6
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 2.0e-83 313.5 327 53.5
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 6.6e-82 308.5 303 55.4
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 1.5e-81 307.4 318 54.7
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 4.3e-81 305.8 363 49.0
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 4.0e-79 299.3 281 58.0
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 1.5e-78 297.4 306 53.9
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 2.6e-78 296.6 251 62.9
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.3e-77 294.3 222 66.7
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 8.3e-77 291.6 314 51.6
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 5.9e-75 285.4 249 61.0
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 7.8e-75 285.0 342 48.8
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.3e-74 284.3 325 49.5
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 5.0e-74 282.3 292 52.4
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.8e-72 276.6 313 51.1
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 3.1e-71 273.1 296 53.0
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.7e-69 267.3 235 61.7
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 1.5e-65 254.2 294 48.6
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 5.6e-65 252.3 255 55.3
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 4.7e-64 249.2 309 46.6
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.4e-62 242.7 278 50.0
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 9.9e-62 241.5 376 40.7
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 1.3e-61 241.1 262 51.1
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 4.9e-61 239.2 257 49.8
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 7.1e-60 235.3 303 41.9
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 4.6e-59 232.6 256 49.2
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 5.1e-58 229.2 312 43.9
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.4e-55 221.1 315 40.6
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 5.8e-54 215.7 275 48.4
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.9e-52 210.7 246 48.8
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 3.0e-50 203.4 159 62.3
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.9e-49 200.7 263 45.2
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 2.9e-45 186.8 308 38.3
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.1e-43 180.6 165 55.2
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 8.7e-42 175.3 206 45.6
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 6.9e-39 165.6 272 37.9
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 2.4e-36 157.1 253 41.1
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.4e-36 157.1 137 59.1
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 4.2e-36 156.4 240 42.5
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.5e-33 147.9 276 35.5
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 1.5e-33 147.9 160 51.9
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 4.3e-33 146.4 111 69.4
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 1.1e-31 141.7 92 71.7
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 2.4e-31 140.6 337 32.0
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.3e-29 134.8 233 37.3
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 4.9e-29 132.9 269 31.6
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 3.2e-28 130.2 405 29.1
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.6e-27 127.9 236 35.2
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 6.2e-24 115.9 258 34.5
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.8e-23 114.4 233 33.5
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 2.9e-21 107.1 119 39.5
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.9e-21 106.3 161 41.6
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.4e-20 104.8 306 29.1
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 2.5e-20 104.0 116 39.7
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 3.2e-20 103.6 72 63.9
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 3.2e-20 103.6 72 63.9
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 7.1e-20 102.4 72 62.5
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 4.6e-19 99.8 291 28.9
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.1e-17 95.1 92 52.2
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 7.4e-17 92.4 209 33.0
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 4.8e-16 89.7 60 70.0
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 6.7e-10 69.3 76 51.3
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 5.7e-09 66.2 100 43.0


User provided reference genes

Program Settings