Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 2.4e-156 555.4 273 100.0
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 8.7e-143 510.4 273 93.0
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 1.4e-119 433.3 273 82.4
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 4.8e-117 424.9 279 76.7
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 1.0e-106 390.6 278 72.7
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 8.5e-106 387.5 278 72.3
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 4.2e-105 385.2 278 71.6
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 1.2e-104 383.6 278 70.5
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 2.1e-104 382.9 278 71.2
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 2.1e-104 382.9 276 71.0
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 2.7e-104 382.5 265 74.0
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 4.7e-104 381.7 256 76.6
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 6.1e-104 381.3 273 70.7
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 2.3e-103 379.4 276 71.4
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 3.9e-103 378.6 272 72.1
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 5.2e-103 378.3 279 70.6
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 3.3e-102 375.6 266 71.4
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 3.3e-102 375.6 278 70.5
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 5.7e-102 374.8 272 72.1
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 7.4e-102 374.4 240 76.7
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 7.4e-102 374.4 271 69.4
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 2.2e-101 372.9 262 72.9
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 2.8e-101 372.5 272 69.9
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 3.7e-101 372.1 233 77.7
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 8.2e-101 370.9 271 69.7
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 1.1e-100 370.5 264 68.2
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 2.4e-100 369.4 267 73.0
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 2.4e-100 369.4 232 78.0
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 3.1e-100 369.0 247 73.7
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 7.0e-100 367.9 272 69.9
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 7.0e-100 367.9 271 70.5
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 1.6e-99 366.7 260 73.1
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 2.6e-99 365.9 250 72.4
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 2.6e-99 365.9 276 68.5
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 1.0e-98 364.0 248 72.2
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 1.3e-98 363.6 262 69.8
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 1.3e-98 363.6 262 71.4
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 2.2e-98 362.8 213 82.6
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 5.0e-98 361.7 256 72.7
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 8.5e-98 360.9 280 67.5
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 8.5e-98 360.9 294 66.7
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.9e-97 359.8 279 67.7
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 2.5e-97 359.4 293 64.8
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 3.2e-97 359.0 265 69.1
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 5.5e-97 358.2 274 67.2
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 2.7e-96 355.9 271 68.3
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 3.6e-96 355.5 277 68.6
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 3.6e-96 355.5 274 68.6
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 3.6e-96 355.5 175 97.1
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 8.0e-96 354.4 275 68.0
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 1.4e-95 353.6 213 78.4
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 2.3e-95 352.8 242 72.3
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 3.0e-95 352.4 265 67.9
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 6.7e-95 351.3 212 79.2
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 1.2e-94 350.5 243 72.8
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 1.2e-94 350.5 272 67.3
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 4.4e-94 348.6 212 79.2
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 2.2e-93 346.3 212 78.8
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 2.2e-93 346.3 212 78.8
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 2.8e-93 345.9 230 74.8
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 3.7e-93 345.5 212 78.3
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 4.8e-93 345.1 212 78.3
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 4.8e-93 345.1 213 79.3
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 8.3e-93 344.4 250 68.4
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 1.4e-92 343.6 212 77.8
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 2.4e-92 342.8 238 69.7
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 1.6e-91 340.1 246 69.1
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 2.0e-91 339.7 254 68.1
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 3.5e-91 339.0 256 69.1
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 3.5e-91 339.0 282 64.9
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 1.0e-90 337.4 266 65.4
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 2.2e-90 336.3 230 72.6
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 5.0e-90 335.1 230 72.2
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 1.4e-87 327.0 219 72.6
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 1.8e-87 326.6 208 74.5
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 2.3e-87 326.2 225 73.3
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 3.0e-87 325.9 262 64.5
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 4.0e-87 325.5 176 86.4
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 6.8e-87 324.7 273 62.6
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 6.8e-87 324.7 271 63.8
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 9.8e-86 320.9 179 90.5
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 9.8e-86 320.9 235 70.2
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 4.5e-83 312.0 234 67.1
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 2.9e-82 309.3 215 71.2
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 6.6e-82 308.1 214 70.6
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 1.2e-80 303.9 207 73.4
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 2.3e-79 299.7 327 54.1
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 2.3e-79 299.7 280 58.9
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 2.0e-78 296.6 261 62.5
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 2.8e-77 292.7 166 80.7
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 8.3e-77 291.2 245 61.2
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 3.2e-76 289.3 352 49.1
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 3.2e-76 289.3 214 71.5
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 1.7e-74 283.5 251 62.2
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 7.3e-73 278.1 222 61.7
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 6.1e-72 275.0 200 71.0
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 2.4e-68 263.1 192 66.7
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 5.4e-68 261.9 186 69.9
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 1.2e-67 260.8 174 75.3
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 1.6e-67 260.4 201 69.7
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 1.9e-65 253.4 169 75.7
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 9.8e-62 241.1 186 60.8
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 7.8e-59 231.5 226 57.5
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 5.8e-54 215.3 209 52.2
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 2.9e-53 213.0 180 57.8
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 8.3e-53 211.5 152 67.1
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 2.4e-52 209.9 141 72.3
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 7.8e-51 204.9 179 53.6
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 4.0e-47 192.6 117 76.9
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 9.3e-44 181.4 275 41.8
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 4.8e-40 169.1 181 49.2
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.1e-36 157.9 81 88.9
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.6e-35 154.1 81 87.7
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 5.6e-33 145.6 76 88.2
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 1.5e-30 137.5 69 91.3
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 2.2e-29 133.7 117 58.1
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 8.7e-26 121.7 181 39.2
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 8.7e-26 121.7 151 52.3
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 1.1e-25 121.3 116 44.0
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 5.3e-23 112.5 58 87.9
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 3.8e-21 106.3 120 50.0
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 4.9e-21 105.9 130 52.3
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 4.8e-16 89.4 51 78.4
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 2.4e-15 87.0 45 84.4
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 6.9e-15 85.5 64 64.1
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 6.5e-13 79.0 64 62.5
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 1.4e-12 77.8 44 77.3


User provided reference genes

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