Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0456441 Rosa chinensis HOM05D001772 ORTHO05D000476 7.2e-113 410.6 211 100.0
RcHm_v2.0_Chr6g0282201 Rosa chinensis HOM05D001772 ORTHO05D000476 5.1e-90 334.7 213 82.6
FvH4_2g17470 Fragaria vesca HOM05D001772 ORTHO05D000476 8.1e-72 274.2 213 71.4
RcHm_v2.0_Chr6g0284601 Rosa chinensis HOM05D001772 ORTHO05D000476 4.9e-61 238.4 143 86.7
Prupe.8G187000 Prunus persica HOM05D001772 ORTHO05D000476 4.6e-59 231.9 236 58.5
MD10G1147900 Malus domestica HOM05D001772 ORTHO05D000476 3.9e-58 228.8 232 59.1
CiPaw.13G055700 Carya illinoinensis HOM05D001772 ORTHO05D000476 6.2e-48 194.9 228 53.5
Haze_03506 Corylus avellana HOM05D001772 ORTHO05D000476 1.0e-45 187.6 221 52.0
Cfa010573 Carpinus fangiana HOM05D001772 ORTHO05D000476 8.4e-45 184.5 221 51.1
CiPaw.14G044200 Carya illinoinensis HOM05D001772 ORTHO05D000476 1.2e-43 180.6 230 50.4
Actinidia23345 Actinidia chinensis HOM05D001772 ORTHO05D000476 3.5e-43 179.1 239 46.9
CANSAT01G0681 Cannabis sativa HOM05D001772 ORTHO05D000476 6.1e-43 178.3 248 47.6
Manes.12G055400 Manihot esculenta HOM05D001772 ORTHO05D000476 1.0e-42 177.6 224 49.6
Dinv28791 Davidia involucrata HOM05D001772 ORTHO05D000476 6.7e-42 174.9 257 45.9
Thecc.01G207500 Theobroma cacao HOM05D001772 ORTHO05D000476 8.7e-42 174.5 241 47.7
Gohir.A08G048200 Gossypium hirsutum HOM05D001772 ORTHO05D000476 1.5e-41 173.7 214 48.6
QL09p045418 Quercus lobata HOM05D001772 ORTHO05D000476 9.7e-41 171.0 223 50.2
COL.COLO4_34275 Corchorus olitorius HOM05D001772 ORTHO05D000476 2.2e-40 169.9 219 47.9
ClCG09G008340 Citrullus lanatus HOM05D001772 ORTHO05D002266 6.3e-40 168.3 239 46.0
Potri.002G239800 Populus trichocarpa HOM05D001772 ORTHO05D000476 1.4e-39 167.2 221 47.5
Sabra02G0182600 Salix brachista HOM05D001772 ORTHO05D000476 6.9e-39 164.9 219 48.9
MELO3C021127.2 Cucumis melo HOM05D001772 ORTHO05D000476 2.0e-38 163.3 240 45.0
Duzib133G1118 Durio zibethinus HOM05D001772 ORTHO05D000476 3.4e-38 162.5 241 45.6
CsaV3_7G026740 Cucumis sativus L. HOM05D000439 ORTHO05D001363 7.7e-38 161.4 240 45.0
GSVIVG01001530001 Vitis vinifera HOM05D001772 ORTHO05D000476 7.7e-38 161.4 219 48.4
Ciclev10016082m.g Citrus clementina HOM05D001772 ORTHO05D000476 1.0e-37 161.0 215 47.4
Gohir.D08G058300 Gossypium hirsutum HOM05D001772 ORTHO05D000476 1.0e-37 161.0 214 45.3
TPR.G35837 Trifolium pratense HOM05D001772 ORTHO05D000476 1.0e-37 161.0 225 45.3
EL10Ac5g10585 Beta vulgaris HOM05D001772 ORTHO05D000476 1.3e-37 160.6 216 47.2
Cpa.g.sc8.39 Carica papaya HOM05D001772 ORTHO05D000476 1.7e-37 160.2 221 48.9
Ca_08035_v3 Cicer arietinum L. HOM05D001772 ORTHO05D000476 1.7e-37 160.2 220 47.7
Migut.D00773 Erythranthe guttata HOM05D001772 ORTHO05D000476 2.2e-37 159.8 229 44.5
AUR62028644 Chenopodium quinoa HOM05D001772 ORTHO05D000476 3.8e-37 159.1 216 46.8
TAR362G0313 Trochodendron aralioides HOM05D001772 ORTHO05D000476 3.8e-37 159.1 255 40.8
arahy.Tifrunner.gnm1.ann1.6LLT9T Arachis hypogaea HOM05D001772 ORTHO05D000476 5.0e-37 158.7 237 46.0
arahy.Tifrunner.gnm1.ann1.Z5E7XJ Arachis hypogaea HOM05D001772 ORTHO05D000476 5.0e-37 158.7 237 46.0
Lj1g0002706 Lotus japonicus HOM05D001772 ORTHO05D000476 5.0e-37 158.7 216 44.0
AUR62008067 Chenopodium quinoa HOM05D001772 ORTHO05D000476 6.5e-37 158.3 216 46.3
Lsat_1_v5_gn_9_16941 Lactuca sativa HOM05D001772 ORTHO05D000476 8.5e-37 157.9 220 46.4
vmacro14687 Vaccinium macrocarpon HOM05D001772 ORTHO05D000476 8.5e-37 157.9 249 44.6
Lj2C1111T5 Lonicera japonica HOM05D001772 ORTHO05D000476 1.9e-36 156.8 254 40.9
TWI36G1769 Tripterygium wilfordii HOM05D001772 ORTHO05D000476 1.9e-36 156.8 228 43.4
Gorai.004G060200 Gossypium raimondii HOM05D001772 ORTHO05D000476 2.5e-36 156.4 214 44.4
Eucgr.K02359 Eucalyptus grandis HOM05D001772 ORTHO05D000476 4.2e-36 155.6 222 46.8
Thhalv10002639m.g Eutrema salsugineum HOM05D001772 ORTHO05D000476 9.4e-36 154.5 213 46.5
AL3G41600 Arabidopsis lyrata HOM05D001772 ORTHO05D000476 2.1e-35 153.3 194 49.5
Dinv35446 Davidia involucrata HOM05D001772 ORTHO05D000476 2.1e-35 153.3 254 43.3
SalBow3G3719 Salvia bowleyana HOM05D001772 ORTHO05D000476 2.1e-35 153.3 226 45.6
THA.LOC104808817 Tarenaya hassleriana HOM05D001772 ORTHO05D000476 2.1e-35 153.3 201 46.8
Aqoxy5G00066 Aquilegia oxysepala HOM05D001772 ORTHO05D000476 2.7e-35 152.9 173 49.7
AT3G25480 Arabidopsis thaliana HOM05D001772 ORTHO05D000476 3.6e-35 152.5 194 48.5
Medtr7g080890 Medicago truncatula HOM05D001772 ORTHO05D000476 3.6e-35 152.5 226 44.2
Hund02807 Selenicereus undatus HOM05D001772 ORTHO05D000476 7.9e-35 151.4 214 44.9
Nn7g37462 Nelumbo nucifera HOM05D001772 ORTHO05D000476 2.3e-34 149.8 272 39.7
Glyma.18G246700 Glycine max HOM05D001772 ORTHO05D000476 5.1e-34 148.7 217 44.7
Oeu020366.1 Olea europaea HOM05D001772 ORTHO05D000476 6.7e-34 148.3 242 43.8
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 8.8e-34 147.9 108 65.7
Sed0023396 Sechium edule HOM05D001772 ORTHO05D000476 1.5e-33 147.1 234 44.9
Lalb_Chr03g0040551 Lupinus albus HOM05D001772 ORTHO05D000476 2.0e-33 146.7 237 43.9
Nitab4.5_0000038g0390 Nicotiana tabacum HOM05D001772 ORTHO05D000476 3.3e-33 146.0 160 50.0
Cc01_g15860 Coffea canephora HOM05D001772 ORTHO05D000476 7.4e-33 144.8 133 54.9
Psat3g100920 Pisum sativum HOM05D001772 ORTHO05D000476 1.7e-32 143.7 197 44.7
MBI10_g28842_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D000476 2.2e-32 143.3 135 54.8
PGSC0003DMG400021910 Solanum tuberosum HOM05D001772 ORTHO05D000476 2.8e-32 142.9 139 54.0
VMungo1383G2637 Vigna mungo HOM05D001772 ORTHO05D000476 2.8e-32 142.9 135 52.6
BcaB08g34454 Brassica carinata HOM05D001772 ORTHO05D000476 3.7e-32 142.5 213 43.7
CARHR101780 Cardamine hirsuta HOM05D001772 ORTHO05D000476 4.8e-32 142.1 196 46.4
BolC3t17745H Brassica oleracea HOM05D001772 ORTHO05D000476 8.2e-32 141.4 213 42.3
Nitab4.5_0008926g0020 Nicotiana tabacum HOM05D001772 ORTHO05D000476 8.2e-32 141.4 233 40.3
SGA_v2.0_scaffold8G04491 Striga asiatica HOM05D001772 ORTHO05D000476 1.1e-31 141.0 237 42.2
Carub.0003s2580 Capsella rubella HOM05D001772 ORTHO05D000476 1.4e-31 140.6 210 43.3
BcaC01g03224 Brassica carinata HOM05D001772 ORTHO05D000476 1.8e-31 140.2 213 42.3
C03p54580 Brassica napus HOM05D001772 ORTHO05D000476 1.8e-31 140.2 213 42.3
Sp3g23000 Schrenkiella parvula HOM05D001772 ORTHO05D000476 1.8e-31 140.2 213 44.1
Phvul.008G050400 Phaseolus vulgaris HOM05D001772 ORTHO05D000476 2.4e-31 139.8 215 42.3
unitig_62.g23942 Utricularia gibba HOM05D001772 ORTHO05D000476 2.4e-31 139.8 201 39.8
A03p44200 Brassica napus HOM05D001772 ORTHO05D000476 3.1e-31 139.4 191 45.5
HanXRQChr07g0190571 Helianthus annuus HOM05D001772 ORTHO05D000476 4.1e-31 139.0 217 42.9
BraA03t13549Z Brassica rapa HOM05D001772 ORTHO05D000476 5.3e-31 138.7 191 45.5
Glyma.09G246300 Glycine max HOM05D001772 ORTHO05D000476 1.5e-30 137.1 228 40.4
CDE09G0012 Ceratophyllum demersum HOM05D001772 ORTHO05D000476 5.9e-30 135.2 155 46.5
HPP92_003443 Vanilla planifolia HOM05D001772 ORTHO05D000476 5.9e-30 135.2 195 42.1
Solyc09g042770.4 Solanum lycopersicum HOM05D001772 ORTHO05D000476 7.7e-30 134.8 221 40.3
PSO170G5618 Papaver somniferum HOM05D001772 ORTHO05D000476 1.0e-29 134.4 231 40.3
PSO357G0631 Papaver somniferum HOM05D001772 ORTHO05D000476 1.0e-29 134.4 231 39.4
Os01g0889800 Oryza sativa ssp. japonica HOM05D001772 ORTHO05D000476 1.7e-29 133.7 133 50.4
CDE02G4114 Ceratophyllum demersum HOM05D001772 ORTHO05D000476 2.2e-29 133.3 164 45.1
PGR044G1970 Punica granatum HOM05D001772 ORTHO05D000476 8.5e-29 131.3 225 41.3
Peaxi162Scf02239g00025 Petunia axillaris HOM05D001772 ORTHO05D000476 2.5e-28 129.8 110 58.2
Sopen09g015820 Solanum pennellii HOM05D001772 ORTHO05D000476 2.5e-28 129.8 118 52.5
ATR0743G233 Amborella trichopoda HOM05D001772 ORTHO05D000476 4.2e-28 129.0 248 37.9
Sed0027176 Sechium edule HOM05D001772 ORTHO05D000476 1.2e-27 127.5 121 59.5
CAN.G311.18 Capsicum annuum HOM05D001772 ORTHO05D000476 2.7e-27 126.3 171 42.1
Zm00001eb365870 Zea mays HOM05D001772 ORTHO05D000476 1.4e-26 124.0 147 45.6
Sc17g0001580 Simmondsia chinensis HOM05D001772 ORTHO05D000476 1.3e-24 117.5 160 43.1
MD05G1153600 Malus domestica HOM05D001772 ORTHO05D000476 1.7e-21 107.1 92 60.9
Rhsim01G0247500 Rhododendron simsii HOM05D001772 ORTHO05D000476 6.5e-21 105.1 100 50.0
ECA247G0275 Erigeron canadensis HOM05D001772 ORTHO05D000476 2.3e-18 96.7 100 53.0
Actinidia29996 Actinidia chinensis HOM05D001772 ORTHO05D000476 6.7e-18 95.1 188 39.4
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.1e-15 87.8 67 61.2
Aa31LG9G5680 Aethionema arabicum HOM05D001772 ORTHO05D000476 1.4e-15 87.4 187 31.0
A09p00240 Brassica napus HOM05D001772 ORTHO05D005958 5.2e-10 68.9 156 32.1
C09p00870 Brassica napus HOM05D001772 ORTHO05D005958 5.2e-10 68.9 188 30.9
BolC9t53021H Brassica oleracea HOM05D001772 ORTHO05D005958 5.2e-10 68.9 188 30.9
BraA09t35751Z Brassica rapa HOM05D001772 ORTHO05D005958 1.5e-09 67.4 156 31.4
BcaC01g06840 Brassica carinata HOM05D001772 ORTHO05D005958 7.5e-09 65.1 156 30.1
BolC3t16157H Brassica oleracea HOM05D001772 ORTHO05D008903 7.5e-09 65.1 156 30.1
Carub.0006s3611 Capsella rubella HOM05D001772 ORTHO05D005958 7.5e-09 65.1 191 29.3
Sp6g01090 Schrenkiella parvula HOM05D001772 ORTHO05D005958 1.3e-08 64.3 156 30.1
Aa31LG5G910 Aethionema arabicum HOM05D001772 ORTHO05D005958 2.2e-08 63.5 195 29.7
BcaB01g02344 Brassica carinata HOM05D001772 ORTHO05D005958 2.2e-08 63.5 183 29.5
BcaC04g24115 Brassica carinata HOM05D001772 ORTHO05D005958 4.8e-08 62.4 156 30.1
A03p31810 Brassica napus HOM05D001772 ORTHO05D008903 4.8e-08 62.4 156 29.5
BraA03t12356Z Brassica rapa HOM05D001772 ORTHO05D008903 4.8e-08 62.4 156 29.5
BcaC04g24121 Brassica carinata HOM05D001772 ORTHO05D005958 6.3e-08 62.0 156 30.8
AT4G01050 Arabidopsis thaliana HOM05D001772 ORTHO05D005958 1.1e-07 61.2 191 28.3
C03p38820 Brassica napus HOM05D001772 ORTHO05D008903 1.1e-07 61.2 156 28.8
AL6G52330 Arabidopsis lyrata HOM05D001772 ORTHO05D005958 1.8e-07 60.5 191 27.7
FAN10G1004 Fragaria x ananassa HOM05D001772 ORTHO05D005958 2.4e-07 60.1 204 28.9
FAN10G2954 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.4e-07 60.1 204 28.9
HPP92_008635 Vanilla planifolia HOM05D001772 ORTHO05D005958 2.4e-07 60.1 70 42.9
Haze_15634 Corylus avellana HOM05D001772 ORTHO05D005958 3.1e-07 59.7 203 28.6
Thhalv10028649m.g Eutrema salsugineum HOM05D001772 ORTHO05D005958 3.1e-07 59.7 195 28.2
FAN06G4998 Fragaria x ananassa HOM05D001772 ORTHO05D008903 3.1e-07 59.7 204 30.4
Prupe.2G185500 Prunus persica HOM05D001772 ORTHO05D005958 3.1e-07 59.7 205 29.3
CARHR249260 Cardamine hirsuta HOM05D001772 ORTHO05D005958 5.4e-07 58.9 206 27.2
FvH4_7g16190 Fragaria vesca HOM05D001772 ORTHO05D005958 5.4e-07 58.9 204 28.9
FAN06G2365 Fragaria x ananassa HOM05D001772 ORTHO05D008903 7.0e-07 58.5 204 28.9
Gorai.008G124200 Gossypium raimondii HOM05D001772 ORTHO05D005958 7.0e-07 58.5 183 27.9
Manes.01G247500 Manihot esculenta HOM05D001772 ORTHO05D005958 7.0e-07 58.5 197 26.9
CANSAT56G1036 Cannabis sativa HOM05D001772 ORTHO05D008903 9.1e-07 58.2 182 29.1
FAN03G0169 Fragaria x ananassa HOM05D001772 ORTHO05D008903 9.1e-07 58.2 223 27.8
QL04p056704 Quercus lobata HOM05D001772 ORTHO05D005958 9.1e-07 58.2 185 28.1
PGR042G0802 Punica granatum HOM05D001772 ORTHO05D005958 1.2e-06 57.8 206 30.6
Actinidia28128 Actinidia chinensis HOM05D001772 ORTHO05D005958 1.6e-06 57.4 157 27.4
CANSAT56G1679 Cannabis sativa HOM05D001772 ORTHO05D008903 1.6e-06 57.4 182 28.6
AUR62004468 Chenopodium quinoa HOM05D001772 ORTHO05D005958 1.6e-06 57.4 158 29.7
AUR62023482 Chenopodium quinoa HOM05D001772 ORTHO05D005958 1.6e-06 57.4 160 28.8
FAN01G1646 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.6e-06 57.4 204 28.4
Gohir.D12G114700 Gossypium hirsutum HOM05D001772 ORTHO05D005958 1.6e-06 57.4 131 30.5
HanXRQChr11g0353041 Helianthus annuus HOM05D001772 ORTHO05D005958 2.7e-06 56.6 70 41.4
Cc02_g39150 Coffea canephora HOM05D001772 ORTHO05D005958 3.5e-06 56.2 127 29.9
Duzib138G1424 Durio zibethinus HOM05D001772 ORTHO05D005958 3.5e-06 56.2 208 28.8
Psat4g160440 Pisum sativum HOM05D001772 ORTHO05D005958 3.5e-06 56.2 123 30.9
Sc23g0002200 Simmondsia chinensis HOM05D001772 ORTHO05D005958 3.5e-06 56.2 203 27.6
vmacro20858 Vaccinium macrocarpon HOM05D001772 ORTHO05D005958 3.5e-06 56.2 205 29.3
PSO170G2207 Papaver somniferum HOM05D001772 ORTHO05D005958 4.5e-06 55.8 203 28.1
TPR.G7664 Trifolium pratense HOM05D001772 ORTHO05D005958 4.5e-06 55.8 123 30.1
Nitab4.5_0001123g0060 Nicotiana tabacum HOM05D001772 ORTHO05D005958 5.9e-06 55.5 157 26.1
PSO063G7149 Papaver somniferum HOM05D001772 ORTHO05D005958 5.9e-06 55.5 203 28.1
Aqoxy7G00134 Aquilegia oxysepala HOM05D001772 ORTHO05D005958 7.7e-06 55.1 136 27.9
Dinv32568 Davidia involucrata HOM05D001772 ORTHO05D005958 7.7e-06 55.1 199 27.1


User provided reference genes

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