Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0456071 Rosa chinensis HOM05D006725 ORTHO05D008223 9.5e-26 119.4 60 100.0
RcHm_v2.0_Chr1g0366581 Rosa chinensis HOM05D006725 ORTHO05D008223 1.4e-16 89.0 45 95.6
RcHm_v2.0_Chr7g0183971 Rosa chinensis HOM05D006725 ORTHO05D008223 1.8e-16 88.6 44 95.5
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 3.1e-16 87.8 45 93.3
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 4.0e-16 87.4 45 93.3
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 9.8e-15 82.8 51 82.4
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 6.4e-14 80.1 51 78.4
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 6.4e-14 80.1 51 78.4
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 6.4e-14 80.1 51 78.4
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 8.3e-14 79.7 51 78.4
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 1.4e-13 79.0 51 72.5
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 1.9e-13 78.6 51 76.5
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 2.4e-13 78.2 51 76.5
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 2.4e-13 78.2 51 76.5
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 2.4e-13 78.2 51 74.5
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 3.2e-13 77.8 54 72.2
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 3.2e-13 77.8 54 72.2
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 4.1e-13 77.4 51 74.5
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 4.1e-13 77.4 51 76.5
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 5.4e-13 77.0 51 76.5
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 5.4e-13 77.0 63 66.7
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 5.4e-13 77.0 51 76.5
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 5.4e-13 77.0 51 76.5
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 7.1e-13 76.6 51 74.5
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 7.1e-13 76.6 51 74.5
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 9.2e-13 76.3 63 66.7
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 1.6e-12 75.5 51 74.5
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 2.1e-12 75.1 51 70.6
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 2.7e-12 74.7 51 68.6
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 2.7e-12 74.7 51 68.6
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 2.7e-12 74.7 51 76.5
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 2.7e-12 74.7 51 72.5
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 4.6e-12 73.9 58 65.5
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 6.0e-12 73.6 51 72.5
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 6.0e-12 73.6 51 70.6
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 6.0e-12 73.6 51 68.6
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 7.8e-12 73.2 51 66.7
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 7.8e-12 73.2 51 72.5
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 7.8e-12 73.2 51 72.5
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 1.0e-11 72.8 51 72.5
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 1.3e-11 72.4 51 68.6
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 1.3e-11 72.4 51 70.6
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 1.3e-11 72.4 51 66.7
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 1.3e-11 72.4 51 66.7
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 1.7e-11 72.0 51 70.6
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 1.7e-11 72.0 51 68.6
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 2.3e-11 71.6 53 66.0
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 2.3e-11 71.6 53 66.0
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 2.3e-11 71.6 51 68.6
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 2.3e-11 71.6 51 68.6
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 3.0e-11 71.2 51 64.7
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 3.0e-11 71.2 51 68.6
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 3.0e-11 71.2 51 66.7
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 3.9e-11 70.9 51 62.7
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 3.9e-11 70.9 53 62.3
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 6.6e-11 70.1 51 66.7
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 6.6e-11 70.1 51 66.7
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 8.6e-11 69.7 51 66.7
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 1.5e-10 68.9 51 62.7
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 1.9e-10 68.6 51 62.7
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 2.5e-10 68.2 51 64.7
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 2.5e-10 68.2 51 64.7
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 2.5e-10 68.2 51 64.7
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 2.5e-10 68.2 51 60.8
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 3.3e-10 67.8 51 60.8
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 3.3e-10 67.8 51 62.7
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 4.3e-10 67.4 51 62.7
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 5.6e-10 67.0 51 60.8
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 7.3e-10 66.6 51 58.8
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 1.6e-09 65.5 51 60.8
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 6.2e-09 63.5 70 48.6
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 5.2e-08 60.5 55 52.7
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 6.8e-08 60.1 45 64.4
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 1.2e-07 59.3 64 51.6
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 1.5e-07 58.9 45 62.2
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 2.0e-07 58.5 45 62.2
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 2.6e-07 58.2 48 56.2
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 3.4e-07 57.8 50 56.0
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 5.8e-07 57.0 83 38.6
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 1.3e-06 55.8 49 57.1
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 2.9e-06 54.7 49 55.1
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 2.9e-06 54.7 49 55.1
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 2.9e-06 54.7 49 55.1
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 2.9e-06 54.7 49 55.1
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 2.9e-06 54.7 49 55.1
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 2.9e-06 54.7 49 55.1
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 2.9e-06 54.7 49 55.1
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 2.9e-06 54.7 49 55.1
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 2.9e-06 54.7 50 54.0
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 2.9e-06 54.7 49 57.1
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 2.9e-06 54.7 85 37.6
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 6.4e-06 53.5 49 53.1


User provided reference genes

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