Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0455741 Rosa chinensis HOM05D002832 ORTHO05D008667 9.6e-83 310.1 152 100.0
RcHm_v2.0_Chr1g0322141 Rosa chinensis HOM05D002832 ORTHO05D008667 1.1e-73 280.0 155 91.6
RcHm_v2.0_Chr1g0322061 Rosa chinensis HOM05D002832 ORTHO05D008667 4.0e-73 278.1 154 92.2
FvH4_6g06570 Fragaria vesca HOM05D002832 ORTHO05D008667 1.6e-66 256.1 154 85.1
FAN14G1300 Fragaria x ananassa HOM05D002832 ORTHO05D008667 2.4e-65 252.3 154 84.4
Prupe.6G320700 Prunus persica HOM05D002832 ORTHO05D008667 8.5e-47 190.7 185 60.0
MD04G1200600 Malus domestica HOM05D002832 ORTHO05D008667 3.9e-44 181.8 184 57.6
MD12G1213100 Malus domestica HOM05D002832 ORTHO05D008667 3.3e-43 178.7 184 57.1
GSVIVG01031143001 Vitis vinifera HOM05D002832 ORTHO05D008667 2.8e-34 149.1 187 47.6
TAR633G1988 Trochodendron aralioides HOM05D002832 ORTHO05D008667 2.7e-32 142.5 188 46.8
Ciclev10001108m.g Citrus clementina HOM05D002832 ORTHO05D008667 7.7e-32 141.0 174 47.7
Haze_04139 Corylus avellana HOM05D002832 ORTHO05D008667 7.7e-32 141.0 202 46.5
Duzib177G0088 Durio zibethinus HOM05D002832 ORTHO05D008667 7.7e-32 141.0 186 48.4
Cfa006629 Carpinus fangiana HOM05D002832 ORTHO05D008667 2.9e-31 139.0 202 45.5
Atru.chr2.30 Acer truncatum HOM05D002832 ORTHO05D008667 3.2e-30 135.6 176 47.2
Thecc.05G313000 Theobroma cacao HOM05D002832 ORTHO05D008667 3.2e-30 135.6 189 48.1
CANSAT54G0675 Cannabis sativa HOM05D002832 ORTHO05D008667 4.2e-30 135.2 190 46.8
Potri.005G025400 Populus trichocarpa HOM05D002832 ORTHO05D008667 4.2e-30 135.2 179 46.9
Gorai.013G125800 Gossypium raimondii HOM05D002832 ORTHO05D008667 9.4e-30 134.0 183 45.9
Gohir.A13G109400 Gossypium hirsutum HOM05D002832 ORTHO05D008667 1.6e-29 133.3 183 45.4
QL03p020213 Quercus lobata HOM05D002832 ORTHO05D008667 2.1e-29 132.9 210 43.3
Gohir.D13G112100 Gossypium hirsutum HOM05D002832 ORTHO05D008667 3.6e-29 132.1 183 45.4
Eucgr.B01913 Eucalyptus grandis HOM05D002832 ORTHO05D008667 2.6e-27 125.9 187 41.7
Sabra05G0030900 Salix brachista HOM05D002832 ORTHO05D008667 9.8e-27 124.0 163 46.6
COL.COLO4_10519 Corchorus olitorius HOM05D002832 ORTHO05D008667 1.7e-26 123.2 190 41.6
Nn4g25828 Nelumbo nucifera HOM05D002832 ORTHO05D008667 1.7e-26 123.2 179 46.9
Medtr7g112680 Medicago truncatula HOM05D002832 ORTHO05D008667 4.8e-26 121.7 184 41.8
Ca_05799_v3 Cicer arietinum L. HOM05D002832 ORTHO05D008667 6.3e-26 121.3 182 38.5
Aqoxy5G00732 Aquilegia oxysepala HOM05D002832 ORTHO05D008667 1.8e-25 119.8 183 39.3
PGR083G0155 Punica granatum HOM05D002832 ORTHO05D008667 1.8e-25 119.8 182 42.3
Lj5A420G19 Lonicera japonica HOM05D002832 ORTHO05D008667 3.1e-25 119.0 179 48.0
Lalb_Chr18g0045771 Lupinus albus HOM05D002832 ORTHO05D008667 1.2e-24 117.1 185 38.4
Psat0s27g0040 Pisum sativum HOM05D002832 ORTHO05D008667 1.2e-24 117.1 186 38.2
Sed0016733 Sechium edule HOM05D002832 ORTHO05D008667 4.5e-24 115.2 181 40.3
arahy.Tifrunner.gnm1.ann1.NSA13U Arachis hypogaea HOM05D002832 ORTHO05D008667 7.7e-24 114.4 184 39.1
Lalb_Chr15g0077341 Lupinus albus HOM05D002832 ORTHO05D008667 7.7e-24 114.4 183 37.7
Phvul.006G089600 Phaseolus vulgaris HOM05D002832 ORTHO05D008667 2.9e-23 112.5 184 40.8
ClCG03G017130 Citrullus lanatus HOM05D002832 ORTHO05D008667 3.8e-23 112.1 181 38.7
CsaV3_1G038830 Cucumis sativus L. HOM05D002832 ORTHO05D008667 5.0e-23 111.7 184 37.5
TWI36G1782 Tripterygium wilfordii HOM05D002832 ORTHO05D008667 8.5e-23 110.9 181 39.8
VMungo0540G0719 Vigna mungo HOM05D002832 ORTHO05D008667 1.5e-22 110.2 184 39.1
MELO3C015307.2 Cucumis melo HOM05D002832 ORTHO05D008667 1.9e-22 109.8 184 38.0
BcaB04g19262 Brassica carinata HOM05D002832 ORTHO05D008667 7.2e-22 107.8 153 43.8
AL3G16110 Arabidopsis lyrata HOM05D002832 ORTHO05D008667 9.5e-22 107.5 175 37.7
Glyma.19G233400 Glycine max HOM05D002832 ORTHO05D008667 1.2e-21 107.1 186 37.1
Aa31LG5G15880 Aethionema arabicum HOM05D002832 ORTHO05D008667 2.1e-21 106.3 175 37.1
CiPaw.07G021400 Carya illinoinensis HOM05D002832 ORTHO05D008667 4.7e-21 105.1 179 41.9
DCAR_022146 Daucus carota HOM05D002832 ORTHO05D008667 4.7e-21 105.1 184 38.6
Glyma.03G235600 Glycine max HOM05D002832 ORTHO05D008667 4.7e-21 105.1 186 36.6
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 1.0e-20 104.0 182 37.4
Hma1.2p1_1292F.1_g273740 Hydrangea macrophylla HOM05D002832 ORTHO05D008667 2.3e-20 102.8 187 41.7
THA.LOC104818717 Tarenaya hassleriana HOM05D002832 ORTHO05D008667 6.8e-20 101.3 180 35.6
MSTRG.27983 Avicennia marina HOM05D002832 ORTHO05D008667 8.8e-20 100.9 179 40.8
BraA03t12590Z Brassica rapa HOM05D002832 ORTHO05D008667 1.2e-19 100.5 150 40.0
BolC3t16436H Brassica oleracea HOM05D002832 ORTHO05D008667 1.5e-19 100.1 146 41.1
CSS0017129 Camellia sinensis var. sinensis HOM05D002832 ORTHO05D008667 2.0e-19 99.8 178 42.1
Manes.08G117500 Manihot esculenta HOM05D002832 ORTHO05D008667 2.0e-19 99.8 183 39.3
C03p41550 Brassica napus HOM05D002832 ORTHO05D008667 3.4e-19 99.0 146 40.4
A03p34160 Brassica napus HOM05D002832 ORTHO05D008667 5.7e-19 98.2 150 39.3
CSS0001457 Camellia sinensis var. sinensis HOM05D002832 ORTHO05D008667 5.7e-19 98.2 178 41.6
Oeu043345.1 Olea europaea HOM05D002832 ORTHO05D008667 5.7e-19 98.2 192 39.6
Sp3g04340 Schrenkiella parvula HOM05D002832 ORTHO05D008667 7.5e-19 97.8 172 36.6
Nitab4.5_0003844g0040 Nicotiana tabacum HOM05D002832 ORTHO05D008667 2.8e-18 95.9 178 38.8
SGA_v2.0_scaffold196G40951 Striga asiatica HOM05D002832 ORTHO05D008667 2.8e-18 95.9 176 38.6
Nitab4.5_0003658g0050 Nicotiana tabacum HOM05D002832 ORTHO05D008667 4.9e-18 95.1 178 38.8
Sc09g0002950 Simmondsia chinensis HOM05D002832 ORTHO05D008667 8.3e-18 94.4 183 37.2
Peaxi162Scf00037g01215 Petunia axillaris HOM05D002832 ORTHO05D008667 3.1e-17 92.4 179 38.0
PGSC0003DMG400024711 Solanum tuberosum HOM05D002832 ORTHO05D008667 4.1e-17 92.0 178 37.6
AT3G05510 Arabidopsis thaliana HOM05D002832 ORTHO05D008667 1.2e-16 90.5 168 36.3
ATR0796G160 Amborella trichopoda HOM05D002832 ORTHO05D008667 2.0e-16 89.7 185 36.8
MBI18_g46421_MAGBIO Magnolia biondii HOM05D002832 ORTHO05D008667 2.0e-16 89.7 171 36.8
Carub.0003s0480 Capsella rubella HOM05D002832 ORTHO05D008667 2.7e-16 89.4 155 38.1
EL10Ac4g09915 Beta vulgaris HOM05D002832 ORTHO05D008667 5.9e-16 88.2 178 34.8
Thhalv10020802m.g Eutrema salsugineum HOM05D002832 ORTHO05D008667 5.9e-16 88.2 178 34.3
vmacro04814 Vaccinium macrocarpon HOM05D002832 ORTHO05D008667 5.9e-16 88.2 186 35.5
TPR.G33230 Trifolium pratense HOM05D002832 ORTHO05D008667 5.0e-15 85.1 208 29.8
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 8.6e-15 84.3 176 37.5
Cc02_g34140 Coffea canephora HOM05D002832 ORTHO05D008667 1.1e-14 84.0 179 39.7
Ah.04g161120 Amaranthus hybridus HOM05D002832 ORTHO05D008667 4.3e-14 82.0 178 33.7
Hund21711 Selenicereus undatus HOM05D002832 ORTHO05D008667 4.3e-14 82.0 188 34.0
HPP92_011845 Vanilla planifolia HOM05D002832 ORTHO05D008667 7.3e-14 81.3 191 32.5
CAN.G1459.11 Capsicum annuum HOM05D002832 ORTHO05D008667 9.5e-14 80.9 179 32.4
Lsat_1_v5_gn_9_124380 Lactuca sativa HOM05D002832 ORTHO05D008667 1.2e-13 80.5 139 40.3
Solyc01g099710.4 Solanum lycopersicum HOM05D002832 ORTHO05D008667 1.2e-13 80.5 166 38.0
Sopen01g043230 Solanum pennellii HOM05D002832 ORTHO05D008667 3.6e-13 79.0 166 36.1
AUR62000763 Chenopodium quinoa HOM05D002832 ORTHO05D008667 8.0e-13 77.8 178 31.5
AUR62005206 Chenopodium quinoa HOM05D002832 ORTHO05D008667 1.4e-12 77.0 179 34.1
ECA240G0796 Erigeron canadensis HOM05D000021 ORTHO05D008667 1.4e-12 77.0 112 44.6
SHI18105 Sapria himalayana HOM05D002832 ORTHO05D008667 2.3e-12 76.3 182 30.8
CDE01G0580 Ceratophyllum demersum HOM05D002832 ORTHO05D008667 8.9e-12 74.3 52 67.3
PSO832G3525 Papaver somniferum HOM05D002832 ORTHO05D008667 1.2e-11 73.9 159 41.5
Dinv40338 Davidia involucrata HOM05D002832 ORTHO05D008667 5.7e-11 71.6 69 55.1
Hma1.2p1_1292F.1_g273750 Hydrangea macrophylla HOM05D002832 ORTHO05D008667 5.7e-11 71.6 50 70.0
Zm00001eb363580 Zea mays HOM05D002832 ORTHO05D008667 4.9e-10 68.6 159 32.1
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 8.3e-10 67.8 50 66.0
Os01g0931300 Oryza sativa ssp. japonica HOM05D002832 ORTHO05D008667 3.5e-08 62.4 53 54.7
unitig_0.g2314 Utricularia gibba HOM05D002832 ORTHO05D008667 5.9e-08 61.6 171 28.1
Zm00001eb148050 Zea mays HOM05D002832 ORTHO05D008667 3.9e-07 58.9 53 58.5
Pp3c12_540 Physcomitrium patens HOM05D002832 ORTHO05D008667 5.6e-06 55.1 66 39.4


User provided reference genes

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