Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0455711 Rosa chinensis HOM05D006406 ORTHO05D007883 2.4e-187 658.7 335 100.0
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 2.9e-148 528.9 329 81.5
MD04G1200800 Malus domestica HOM05D006406 ORTHO05D007883 6.0e-146 521.2 341 79.2
QL03p020986 Quercus lobata HOM05D006406 ORTHO05D007883 5.5e-139 498.0 340 74.1
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 2.1e-138 496.1 303 82.8
Haze_04140 Corylus avellana HOM05D006406 ORTHO05D007883 2.7e-138 495.7 338 74.3
Cfa006628 Carpinus fangiana HOM05D006406 ORTHO05D007883 1.8e-137 493.0 338 74.3
Prupe.6G320900 Prunus persica HOM05D006406 ORTHO05D007883 6.7e-137 491.1 313 79.2
QL03p021882 Quercus lobata HOM05D006406 ORTHO05D007883 1.1e-136 490.3 340 72.9
Duzib177G0190 Durio zibethinus HOM05D006406 ORTHO05D007883 2.6e-133 479.2 335 70.7
COL.COLO4_10518 Corchorus olitorius HOM05D006406 ORTHO05D007883 7.7e-133 477.6 339 70.8
CiPaw.08G161900 Carya illinoinensis HOM05D006406 ORTHO05D007883 8.5e-132 474.2 342 71.1
Thecc.05G312900 Theobroma cacao HOM05D006406 ORTHO05D007883 7.2e-131 471.1 336 69.6
Cpa.g.sc48.95 Carica papaya HOM05D006406 ORTHO05D007883 1.8e-129 466.5 345 71.6
Ciclev10001711m.g Citrus clementina HOM05D006406 ORTHO05D007883 2.0e-128 463.0 344 67.4
Potri.013G017100 Populus trichocarpa HOM05D006406 ORTHO05D007883 3.3e-128 462.2 350 66.6
arahy.Tifrunner.gnm1.ann1.Q6XDLT Arachis hypogaea HOM05D006406 ORTHO05D007883 9.7e-128 460.7 337 68.2
arahy.Tifrunner.gnm1.ann1.PP7FUY Arachis hypogaea HOM05D006406 ORTHO05D007883 2.8e-127 459.1 337 68.0
Glyma.03G235700 Glycine max HOM05D006406 ORTHO05D007883 3.7e-127 458.8 339 67.8
Manes.08G117600 Manihot esculenta HOM05D006406 ORTHO05D007883 4.8e-127 458.4 337 66.5
Sabra13G0015900 Salix brachista HOM05D006406 ORTHO05D007883 4.8e-127 458.4 348 66.1
Atru.chr2.29 Acer truncatum HOM05D006406 ORTHO05D007883 1.4e-126 456.8 336 70.2
Sabra13G0020100 Salix brachista HOM05D006406 ORTHO05D007883 1.8e-126 456.4 348 65.8
Ca_05800_v3 Cicer arietinum L. HOM05D006406 ORTHO05D007883 9.1e-126 454.1 344 67.2
Lalb_Chr18g0045761 Lupinus albus HOM05D006406 ORTHO05D007883 1.2e-125 453.8 335 67.5
GSVIVG01031144001 Vitis vinifera HOM05D006406 ORTHO05D007883 3.4e-125 452.2 340 66.8
Carub.0006s2486 Capsella rubella HOM05D006406 ORTHO05D007883 2.9e-124 449.1 338 66.6
TPR.G33225 Trifolium pratense HOM05D006406 ORTHO05D007883 3.8e-124 448.7 343 65.9
CsaV3_1G038840 Cucumis sativus L. HOM05D006406 ORTHO05D007883 5.0e-124 448.4 338 65.1
Medtr7g112650 Medicago truncatula HOM05D006406 ORTHO05D007883 6.5e-124 448.0 336 66.4
TAR633G0157 Trochodendron aralioides HOM05D006406 ORTHO05D007883 1.9e-123 446.4 349 64.2
Lj1g0022852 Lotus japonicus HOM05D006406 ORTHO05D007883 5.5e-123 444.9 343 65.9
Hund07096 Selenicereus undatus HOM05D006406 ORTHO05D007883 5.5e-123 444.9 329 66.0
VMungo0540G0116 Vigna mungo HOM05D006406 ORTHO05D007883 1.2e-122 443.7 339 66.1
PGR083G2713 Punica granatum HOM05D006406 ORTHO05D007883 1.6e-122 443.4 309 70.2
Oeu043348.1 Olea europaea HOM05D006406 ORTHO05D007883 1.0e-121 440.7 333 67.6
Hma1.2p1_1212F.1_g267260 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 3.0e-121 439.1 332 66.0
TWI12G0288 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 3.0e-121 439.1 341 65.4
Eucgr.B01914 Eucalyptus grandis HOM05D006406 ORTHO05D007883 3.9e-121 438.7 367 62.7
Nn4g25830 Nelumbo nucifera HOM05D006406 ORTHO05D007883 5.2e-121 438.3 357 63.6
CANSAT54G1062 Cannabis sativa HOM05D006406 ORTHO05D007883 6.7e-121 438.0 343 65.9
Gohir.A13G109200 Gossypium hirsutum HOM05D006406 ORTHO05D007883 1.5e-120 436.8 338 64.5
ClCG03G017120 Citrullus lanatus HOM05D006406 ORTHO05D007883 2.6e-120 436.0 336 64.0
THA.LOC104818716 Tarenaya hassleriana HOM05D006406 ORTHO05D007883 3.3e-120 435.6 344 66.3
Rhsim07G0188300 Rhododendron simsii HOM05D006406 ORTHO05D007883 4.4e-120 435.3 299 70.6
Sc16g0008820 Simmondsia chinensis HOM05D006406 ORTHO05D007883 4.4e-120 435.3 345 63.2
Gorai.013G125700 Gossypium raimondii HOM05D006406 ORTHO05D007883 7.4e-120 434.5 338 64.5
Psat0s27g0120 Pisum sativum HOM05D006406 ORTHO05D007883 1.3e-119 433.7 333 64.3
AL6G39250 Arabidopsis lyrata HOM05D006406 ORTHO05D007883 1.7e-119 433.3 337 64.4
Aa31LG11G9460 Aethionema arabicum HOM05D006406 ORTHO05D007883 2.2e-119 433.0 333 66.1
Thhalv10005730m.g Eutrema salsugineum HOM05D006406 ORTHO05D007883 2.8e-119 432.6 342 65.8
Phvul.006G089700 Phaseolus vulgaris HOM05D006406 ORTHO05D007883 3.7e-119 432.2 331 65.9
Lj9C146T2 Lonicera japonica HOM05D006406 ORTHO05D007883 8.2e-119 431.0 310 66.8
TWI36G0652 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 1.8e-118 429.9 341 63.0
CAN.G1459.10 Capsicum annuum HOM05D006406 ORTHO05D007883 9.1e-118 427.6 303 67.3
Sp2g20880 Schrenkiella parvula HOM05D006406 ORTHO05D007883 9.1e-118 427.6 339 64.6
AT5G27710 Arabidopsis thaliana HOM05D006406 ORTHO05D007883 1.6e-117 426.8 333 64.0
Gohir.D13G112000 Gossypium hirsutum HOM05D006406 ORTHO05D007883 7.7e-117 424.5 300 68.7
Hund07097 Selenicereus undatus HOM05D006406 ORTHO05D007883 2.2e-116 422.9 293 67.9
vmacro04816 Vaccinium macrocarpon HOM05D006406 ORTHO05D007883 2.9e-116 422.5 356 61.5
EL10Ac4g09916 Beta vulgaris HOM05D006406 ORTHO05D007883 1.5e-115 420.2 294 68.7
Actinidia35561 Actinidia chinensis HOM05D006406 ORTHO05D007883 2.5e-115 419.5 349 62.8
Sed0006495 Sechium edule HOM05D006406 ORTHO05D007883 9.4e-115 417.5 341 62.2
Aqoxy5G00730 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 1.2e-114 417.2 351 62.1
MBI18_g46420_MAGBIO Magnolia biondii HOM05D006406 ORTHO05D007883 1.6e-114 416.8 299 66.2
Nitab4.5_0003658g0090 Nicotiana tabacum HOM05D006406 ORTHO05D007883 2.7e-114 416.0 299 65.2
SalBow7G2778 Salvia bowleyana HOM05D006406 ORTHO05D007883 2.7e-114 416.0 331 64.7
A09p05410 Brassica napus HOM05D006406 ORTHO05D007883 1.0e-113 414.1 342 65.5
Sopen01g043220 Solanum pennellii HOM05D006406 ORTHO05D007883 1.0e-113 414.1 302 64.9
BraA09t36179Z Brassica rapa HOM05D006406 ORTHO05D007883 1.4e-113 413.7 342 65.5
Solyc01g099700.3 Solanum lycopersicum HOM05D006406 ORTHO05D007883 6.7e-113 411.4 302 64.6
Peaxi162Scf00037g01125 Petunia axillaris HOM05D006406 ORTHO05D007883 2.6e-112 409.5 323 62.8
PGSC0003DMG400007542 Solanum tuberosum HOM05D006406 ORTHO05D007883 3.3e-112 409.1 300 66.0
Nitab4.5_0003844g0020 Nicotiana tabacum HOM05D006406 ORTHO05D007883 6.3e-111 404.8 290 66.6
SGA_v2.0_scaffold172G38986 Striga asiatica HOM05D006406 ORTHO05D007883 4.1e-110 402.1 341 61.0
AUR62000764 Chenopodium quinoa HOM05D006406 ORTHO05D007883 5.9e-109 398.3 297 65.3
CSS0003718 Camellia sinensis var. sinensis HOM05D006406 ORTHO05D007883 7.7e-109 397.9 350 61.7
BcaC04g23642 Brassica carinata HOM05D006406 ORTHO05D007883 1.3e-108 397.1 339 62.8
BcaB04g19684 Brassica carinata HOM05D006406 ORTHO05D007883 3.8e-108 395.6 317 65.0
FvH4_6g06560 Fragaria vesca HOM05D006406 ORTHO05D007883 6.5e-108 394.8 243 82.3
unitig_52.g17112 Utricularia gibba HOM05D006406 ORTHO05D007883 1.1e-107 394.0 304 66.1
C09p05890 Brassica napus HOM05D006406 ORTHO05D007883 3.2e-107 392.5 344 63.4
BolC9t53515H Brassica oleracea HOM05D006406 ORTHO05D007883 3.2e-107 392.5 344 63.4
ECA236G2290 Erigeron canadensis HOM05D006406 ORTHO05D007883 3.2e-107 392.5 284 66.9
CARHR186230 Cardamine hirsuta HOM05D006406 ORTHO05D007883 4.7e-106 388.7 314 62.7
Lsat_1_v5_gn_9_88181 Lactuca sativa HOM05D006406 ORTHO05D007883 4.0e-105 385.6 320 61.9
Migut.N01744 Erythranthe guttata HOM05D006406 ORTHO05D007883 5.2e-105 385.2 302 63.9
PSO210G1514 Papaver somniferum HOM05D006406 ORTHO05D007883 7.5e-104 381.3 338 58.9
HanXRQChr11g0339311 Helianthus annuus HOM05D006406 ORTHO05D007883 9.8e-104 380.9 305 63.6
Os07g0673000 Oryza sativa ssp. japonica HOM05D006406 ORTHO05D007883 1.1e-102 377.5 266 68.4
PSO210G1688 Papaver somniferum HOM05D006406 ORTHO05D007883 9.1e-102 374.4 339 59.0
Cc02_g34120 Coffea canephora HOM05D006406 ORTHO05D007883 2.0e-101 373.2 215 80.0
AUR62005205 Chenopodium quinoa HOM05D006406 ORTHO05D007883 5.0e-100 368.6 318 59.7
Ah.06g189770 Amaranthus hybridus HOM05D006406 ORTHO05D007883 6.5e-100 368.2 267 66.7
Dinv30810 Davidia involucrata HOM05D006406 ORTHO05D007883 8.0e-98 361.3 252 70.6
CDE11G0411 Ceratophyllum demersum HOM05D001335 ORTHO05D001184 1.8e-97 360.1 305 57.4
ATR0796G153 Amborella trichopoda HOM05D006406 ORTHO05D007883 3.4e-96 355.9 283 62.2
Glyma.19G233500 Glycine max HOM05D006406 ORTHO05D007883 7.5e-96 354.8 281 65.1
DCAR_029393 Daucus carota HOM05D006406 ORTHO05D007883 3.8e-92 342.4 348 53.7
SEGI_05797 Sequoiadendron giganteum HOM05D006406 ORTHO05D007883 1.8e-89 333.6 342 51.2
MELO3C015308.2 Cucumis melo HOM05D006406 ORTHO05D007883 8.6e-84 314.7 344 50.9
Pp3c6_26830 Physcomitrium patens HOM05D006406 ORTHO05D007883 2.4e-70 270.0 237 51.9
Zm00001eb111280 Zea mays HOM05D006406 ORTHO05D007883 1.0e-68 264.6 237 62.0
SMO172G0153 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 1.9e-67 260.4 281 47.3
Mapoly0054s0047 Marchantia polymorpha HOM05D006406 ORTHO05D007883 2.5e-67 260.0 310 44.8
Hma1.2p1_1212F.1_g267270 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 1.8e-65 253.8 218 61.0
SMO172G0232 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 3.1e-65 253.1 282 46.1
Oeu043349.1 Olea europaea HOM05D006406 ORTHO05D007883 4.9e-63 245.7 219 61.2
CBR_g19246 Chara braunii HOM05D006406 ORTHO05D007883 2.8e-58 229.9 252 44.4
PGSC0003DMG400024710 Solanum tuberosum HOM05D006406 ORTHO05D007883 1.1e-57 228.0 186 61.8
HPP92_011843 Vanilla planifolia HOM05D006406 ORTHO05D007883 1.4e-57 227.6 306 43.5
FAN02G3513 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.7e-52 210.7 157 73.9
SMO198G0100 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 1.4e-49 201.1 272 40.4
arahy.Tifrunner.gnm1.ann1.AST3BR Arachis hypogaea HOM05D006406 ORTHO05D007883 3.4e-48 196.4 164 57.3
PSO421G0497 Papaver somniferum HOM05D006406 ORTHO05D007883 1.3e-42 177.9 309 35.6
AagrBONN_evm.TU.Sc2ySwM_362.2555 Anthoceros agrestis HOM05D006406 ORTHO05D007883 5.5e-30 136.0 114 53.5
MSTRG.16393 Avicennia marina HOM05D006406 ORTHO05D007883 2.1e-29 134.0 141 53.9
BcaB07g32734 Brassica carinata HOM05D006406 ORTHO05D007883 4.5e-16 89.7 118 49.2
Lsat_1_v5_gn_5_186620 Lactuca sativa HOM05D006406 ORTHO05D007883 2.6e-11 73.9 161 34.8
AL3G41450 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 7.4e-11 72.4 48 68.8
Cre09.g392700 Chlamydomonas reinhardtii HOM05D006406 ORTHO05D007883 1.1e-09 68.6 101 40.6
Aqoxy601s001 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 1.0e-07 62.0 34 76.5


User provided reference genes

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