Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 2.3e-254 881.7 442 100.0
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 4.7e-239 830.9 442 94.8
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 3.3e-232 808.1 443 92.3
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 6.9e-206 720.7 382 95.5
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 1.2e-205 719.9 382 95.5
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 8.1e-199 697.2 452 76.8
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 1.3e-193 679.9 452 75.0
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 1.1e-184 650.2 450 72.9
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 8.4e-180 634.0 455 72.1
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 2.5e-179 632.5 449 72.6
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 3.5e-178 628.6 456 71.3
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 6.3e-175 617.8 450 70.4
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 1.8e-174 616.3 453 70.4
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 2.4e-174 615.9 452 70.1
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 9.0e-174 614.0 452 69.9
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 2.2e-172 609.4 454 68.5
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 2.9e-172 609.0 451 69.6
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 3.8e-172 608.6 459 69.5
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 3.6e-170 602.1 450 67.6
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 1.4e-169 600.1 453 68.4
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 5.1e-169 598.2 452 69.0
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 1.5e-168 596.7 452 67.7
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 1.7e-167 593.2 425 70.4
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 8.2e-167 590.9 452 66.8
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 6.9e-166 587.8 452 67.7
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 9.1e-166 587.4 453 66.7
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 3.4e-165 585.5 448 67.2
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 2.2e-164 582.8 456 67.3
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 2.9e-164 582.4 454 66.7
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 5.0e-164 581.6 453 67.5
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 4.2e-163 578.6 452 65.7
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 4.2e-163 578.6 476 63.9
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 4.7e-162 575.1 454 66.7
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 4.7e-162 575.1 472 64.6
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 7.9e-162 574.3 490 62.4
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 1.0e-161 573.9 439 66.3
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 3.9e-161 572.0 448 65.8
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 6.7e-161 571.2 445 65.4
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 2.6e-160 569.3 453 66.0
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 3.3e-160 568.9 445 65.4
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 2.8e-159 565.8 453 65.8
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 8.2e-159 564.3 453 65.6
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 1.8e-158 563.1 449 64.6
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 9.1e-158 560.8 429 66.4
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 1.2e-157 560.5 449 64.6
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 1.5e-157 560.1 449 64.6
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 2.6e-157 559.3 405 71.4
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.6e-157 559.3 449 63.5
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 5.9e-157 558.1 447 64.4
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 1.0e-156 557.4 443 66.1
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 1.3e-156 557.0 449 64.4
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 2.9e-156 555.8 429 66.0
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 4.2e-155 552.0 450 64.2
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 4.7e-154 548.5 453 62.9
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 4.7e-154 548.5 459 63.2
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 2.3e-153 546.2 449 63.7
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 1.5e-152 543.5 461 63.8
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 2.0e-152 543.1 447 65.5
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 2.2e-151 539.7 452 62.6
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 8.2e-151 537.7 461 63.1
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 1.7e-148 530.0 452 61.9
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 1.7e-148 530.0 455 61.3
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 3.8e-148 528.9 340 78.5
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 9.4e-147 524.2 452 61.1
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 4.7e-146 521.9 459 61.0
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 6.1e-146 521.5 454 61.5
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 6.1e-146 521.5 417 65.9
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 8.0e-146 521.2 412 65.5
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 1.0e-145 520.8 340 77.1
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 1.4e-145 520.4 462 60.8
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 2.3e-145 519.6 453 60.7
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 4.0e-145 518.8 452 60.6
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 6.8e-145 518.1 455 61.5
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.5e-144 516.9 445 62.7
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 3.4e-144 515.8 453 60.3
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 1.7e-143 513.5 441 61.7
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 1.1e-142 510.8 478 58.8
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 4.1e-142 508.8 464 60.1
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 1.2e-141 507.3 469 59.1
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 4.5e-141 505.4 340 74.4
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 1.7e-140 503.4 464 59.1
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 7.2e-139 498.0 508 55.1
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 3.4e-136 489.2 337 73.6
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 9.8e-136 487.6 372 67.7
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 1.7e-135 486.9 442 58.6
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 5.4e-134 481.9 449 58.1
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 5.9e-133 478.4 334 71.3
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 7.7e-133 478.0 411 62.3
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 1.2e-130 470.7 466 56.0
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 8.0e-122 441.4 457 53.8
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 2.3e-121 439.9 453 53.2
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 7.5e-120 434.9 289 75.8
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 1.7e-119 433.7 255 82.7
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 3.2e-118 429.5 464 52.6
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 2.7e-117 426.4 377 61.5
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 1.0e-116 424.5 475 49.1
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 6.6e-116 421.8 335 65.1
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 9.5e-115 417.9 393 57.0
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 5.8e-112 408.7 255 76.5
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 5.4e-110 402.1 458 49.8
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 6.0e-109 398.7 366 59.0
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.3e-108 396.7 253 75.9
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 4.1e-102 375.9 380 52.1
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 3.9e-100 369.4 419 50.6
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 5.1e-100 369.0 357 57.4
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.1e-99 367.9 428 52.1
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.2e-98 364.4 397 50.6
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 4.9e-95 352.4 360 50.0
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 1.0e-92 344.7 245 69.8
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 8.7e-92 341.7 350 49.7
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 8.1e-90 335.1 287 56.4
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 1.3e-87 327.8 286 63.3
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 4.2e-86 322.8 390 47.4
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 5.3e-81 305.8 336 50.3
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.4e-73 281.2 451 41.5
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.5e-69 266.5 443 40.6
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 2.1e-53 214.2 234 54.3
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 3.9e-52 209.9 252 46.8
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 1.5e-48 198.0 193 58.0
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 2.2e-47 194.1 161 60.9
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 3.8e-47 193.4 288 43.8
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 2.0e-35 154.5 93 76.3
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 4.8e-34 149.8 306 33.0
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 2.2e-31 141.0 140 56.4
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 1.1e-30 138.7 121 58.7
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 4.4e-27 126.7 134 54.5
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 1.0e-23 115.5 60 83.3
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 8.5e-23 112.5 201 40.8
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.5e-22 110.9 125 47.2
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 1.0e-20 105.5 220 32.3
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 3.7e-18 97.1 223 35.9
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 1.8e-17 94.7 73 68.5
PGSC0003DMG401006600 Solanum tuberosum HOM05D032728 ORTHO05D007283 4.6e-08 63.5 57 52.6


User provided reference genes

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