Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 1.9e-145 519.2 281 100.0
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.8e-128 461.5 281 83.3
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 4.9e-125 451.4 238 93.3
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.6e-123 446.4 238 92.4
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 5.1e-122 441.4 233 93.1
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 6.7e-122 441.0 238 90.3
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.6e-118 429.1 256 84.0
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 1.8e-111 406.4 282 74.1
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 2.5e-105 386.0 277 72.2
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 9.7e-105 384.0 285 72.3
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 2.5e-92 342.8 281 63.7
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 4.7e-91 338.6 287 61.0
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 4.7e-91 338.6 282 62.4
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 7.9e-91 337.8 281 61.6
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 1.0e-90 337.4 237 70.5
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 1.4e-90 337.0 237 69.6
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 1.4e-90 337.0 275 62.2
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.4e-90 337.0 290 59.7
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 1.8e-90 336.7 275 62.2
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 1.8e-90 336.7 281 61.2
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 3.0e-90 335.9 287 63.4
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 6.7e-90 334.7 272 62.9
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.5e-89 333.6 281 60.1
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 2.6e-89 332.8 281 61.9
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 3.3e-89 332.4 281 59.1
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 3.3e-89 332.4 281 59.8
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 5.7e-89 331.6 291 58.8
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 5.7e-89 331.6 230 69.6
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 3.7e-88 328.9 282 60.6
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.7e-88 328.9 282 59.9
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 3.7e-88 328.9 282 59.9
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 4.8e-88 328.6 282 59.6
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 8.2e-88 327.8 237 67.9
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 8.2e-88 327.8 281 60.1
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.4e-87 327.0 291 58.4
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 1.4e-87 327.0 281 60.1
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 1.8e-87 326.6 236 67.4
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 1.8e-87 326.6 281 59.4
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 1.8e-87 326.6 281 60.1
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 9.1e-87 324.3 281 59.4
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 1.2e-86 323.9 281 59.1
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 1.6e-86 323.6 233 69.1
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 1.6e-86 323.6 226 68.6
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 1.6e-86 323.6 278 62.2
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 2.0e-86 323.2 238 67.2
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 2.0e-86 323.2 229 69.0
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 3.5e-86 322.4 282 62.4
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 5.9e-86 321.6 230 65.7
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 5.9e-86 321.6 281 58.7
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 7.7e-86 321.2 241 65.6
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 7.7e-86 321.2 231 67.5
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 7.7e-86 321.2 231 67.5
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 7.7e-86 321.2 292 58.6
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 1.0e-85 320.9 230 69.6
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 1.3e-85 320.5 240 65.4
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 1.3e-85 320.5 240 65.4
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 1.3e-85 320.5 240 65.4
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 3.8e-85 318.9 277 61.7
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 3.8e-85 318.9 231 68.4
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 1.1e-84 317.4 274 59.5
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 1.1e-84 317.4 233 67.4
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.1e-84 317.4 231 66.2
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 1.5e-84 317.0 239 64.9
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.9e-84 316.6 236 64.4
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 2.5e-84 316.2 275 59.3
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 3.2e-84 315.8 232 64.7
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 4.2e-84 315.5 230 69.1
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 7.2e-84 314.7 233 66.1
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 7.2e-84 314.7 231 66.7
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 1.6e-83 313.5 229 68.6
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.1e-83 313.2 233 65.2
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 2.7e-83 312.8 237 65.8
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 2.7e-83 312.8 237 65.8
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 2.7e-83 312.8 277 58.1
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 4.7e-83 312.0 277 58.8
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 3.0e-82 309.3 222 69.4
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 4.0e-82 308.9 228 68.9
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 5.2e-82 308.5 233 65.2
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 8.8e-82 307.8 229 65.9
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 1.2e-81 307.4 233 63.9
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 2.0e-81 306.6 231 66.2
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 2.6e-81 306.2 231 65.8
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 9.7e-81 304.3 222 67.6
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 2.2e-80 303.1 222 67.6
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 2.2e-80 303.1 238 62.6
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 3.7e-80 302.4 230 63.9
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 8.2e-80 301.2 231 64.1
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 3.1e-79 299.3 233 64.4
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 4.1e-79 298.9 237 64.1
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 5.3e-79 298.5 222 67.1
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 1.6e-78 297.0 222 66.2
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 1.0e-74 284.3 236 62.7
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 1.4e-74 283.9 280 53.9
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 3.0e-74 282.7 232 61.6
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 4.0e-74 282.3 228 61.4
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 6.8e-74 281.6 275 53.1
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 2.0e-73 280.0 220 62.7
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 7.5e-73 278.1 332 47.6
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 9.1e-71 271.2 205 66.8
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 7.7e-70 268.1 230 58.3
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 2.3e-69 266.5 219 58.0
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 3.2e-68 262.7 281 50.9
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 1.2e-67 260.8 191 67.5
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 6.1e-67 258.5 433 38.8
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 2.8e-64 249.6 215 54.9
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 9.8e-57 224.6 216 52.3
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 8.6e-53 211.5 216 49.5
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 8.6e-53 211.5 117 86.3
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 6.8e-50 201.8 164 61.0
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 7.5e-49 198.4 216 46.3
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 2.0e-46 190.3 172 57.0
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 3.3e-44 183.0 111 76.6
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 7.3e-44 181.8 107 78.5
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 6.8e-42 175.3 104 77.9
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 3.2e-39 166.4 134 62.7
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.4e-34 150.2 99 69.7
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 2.5e-28 130.2 158 45.6
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 2.8e-27 126.7 246 33.7
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 1.4e-26 124.4 124 54.8
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 1.2e-25 121.3 125 55.2
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 2.0e-17 94.0 88 53.4
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 2.9e-16 90.1 67 65.7
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 6.4e-16 89.0 92 50.0
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.4e-10 71.2 77 46.8
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.8e-10 70.9 113 41.6
SalBow5G0658 Salvia bowleyana HOM05D041286 ORTHO05D008009 1.2e-06 58.2 47 57.4


User provided reference genes

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