Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 4.9e-229 797.7 457 100.0
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.5e-196 689.1 389 88.7
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 7.2e-196 687.6 457 84.5
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 6.7e-194 681.0 389 87.9
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.3e-192 676.8 389 87.1
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.1e-191 673.7 390 87.2
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 2.7e-166 589.3 389 76.3
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 3.5e-166 589.0 458 72.5
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 8.6e-165 584.3 389 75.3
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.9e-151 540.0 389 68.4
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 3.3e-148 529.3 389 67.1
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 2.2e-144 516.5 385 66.5
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 5.4e-143 511.9 456 59.2
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 4.6e-142 508.8 390 64.9
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 8.6e-141 504.6 390 66.4
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 1.1e-138 497.7 392 63.5
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 7.6e-137 491.5 390 62.8
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 2.9e-136 489.6 387 64.9
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 4.9e-136 488.8 388 61.6
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 1.2e-134 484.2 352 67.0
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 2.1e-134 483.4 381 62.2
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 1.0e-133 481.1 389 61.7
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.3e-133 480.7 457 54.5
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.7e-133 480.3 391 61.1
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.7e-133 480.3 388 60.3
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 2.3e-133 479.9 391 61.4
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 2.3e-133 479.9 390 60.8
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 2.3e-133 479.9 389 59.6
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 3.0e-133 479.6 393 59.8
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 5.1e-133 478.8 385 63.1
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 1.1e-132 477.6 393 62.3
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 1.5e-132 477.2 387 62.3
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 1.5e-132 477.2 390 61.3
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 1.5e-132 477.2 385 62.1
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 5.6e-132 475.3 390 61.0
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 7.3e-132 474.9 385 61.0
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 3.6e-131 472.6 388 59.5
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 1.8e-130 470.3 460 59.1
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 1.4e-127 460.7 393 57.8
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 2.4e-127 459.9 394 60.2
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 4.2e-127 459.1 391 60.4
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 2.1e-126 456.8 390 58.7
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 4.6e-126 455.7 392 61.0
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 1.3e-125 454.1 459 53.4
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 1.7e-125 453.8 390 57.2
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 1.7e-125 453.8 385 60.0
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 8.7e-125 451.4 390 57.7
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 8.7e-125 451.4 390 57.7
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 2.5e-124 449.9 390 56.7
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 2.5e-124 449.9 390 56.7
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 2.5e-124 449.9 390 56.9
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 7.3e-124 448.4 390 56.9
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 1.6e-123 447.2 387 59.4
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 4.8e-123 445.7 387 57.9
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 4.8e-123 445.7 380 59.5
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 1.8e-122 443.7 391 55.8
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 3.1e-122 443.0 390 57.2
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 6.9e-122 441.8 344 64.2
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 3.4e-121 439.5 391 57.0
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 7.6e-121 438.3 390 56.4
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 1.3e-120 437.6 391 55.5
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 3.8e-120 436.0 390 56.2
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 8.4e-120 434.9 459 52.7
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 8.4e-120 434.9 387 55.6
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 1.4e-119 434.1 389 55.0
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 2.4e-119 433.3 391 54.7
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 4.2e-119 432.6 391 54.5
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 1.6e-118 430.6 389 54.8
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.0e-117 427.9 344 61.6
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.1e-116 424.5 370 57.6
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 1.1e-116 424.5 458 51.7
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 4.0e-114 416.0 391 54.2
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 2.2e-112 410.2 418 51.4
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 6.4e-112 408.7 391 52.7
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 6.4e-112 408.7 394 54.6
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 8.4e-112 408.3 390 52.8
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 1.4e-111 407.5 344 59.6
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 1.2e-110 404.4 393 50.9
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 1.2e-110 404.4 346 59.5
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.6e-110 404.1 347 57.3
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.6e-110 404.1 347 57.3
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 3.5e-110 402.9 344 59.0
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 1.3e-109 401.0 344 58.7
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 3.9e-109 399.4 317 62.5
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 8.7e-109 398.3 395 52.9
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 5.3e-106 389.0 389 49.4
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 5.3e-106 389.0 306 61.8
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 7.6e-105 385.2 330 57.6
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 1.3e-104 384.4 394 50.8
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 4.6e-102 375.9 397 48.4
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.6e-99 367.5 311 58.5
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 4.3e-92 342.8 389 44.2
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 1.7e-80 304.3 307 50.8
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 1.2e-78 298.1 254 59.1
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 7.4e-76 288.9 274 50.7
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 2.5e-63 247.3 391 37.9
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 8.0e-62 242.3 183 63.4
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 3.3e-55 220.3 347 37.8
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 1.5e-52 211.5 347 37.5
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 1.5e-52 211.5 302 41.7
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 1.3e-51 208.4 294 43.2
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 8.6e-48 195.7 403 31.0
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 1.9e-47 194.5 196 55.1
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 1.7e-35 154.8 369 31.7
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 2.1e-33 147.9 463 27.0
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 8.9e-29 132.5 115 56.5
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 9.9e-28 129.0 177 40.1
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.3e-27 128.6 107 59.8
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 3.7e-27 127.1 107 59.8
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 3.8e-11 73.9 106 44.3
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 3.0e-08 64.3 54 53.7
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 6.6e-08 63.2 55 61.8
BcaC02g09462 Brassica carinata HOM05D007239 ORTHO05D003473 8.7e-08 62.8 326 23.0
C04p43040 Brassica napus HOM05D007239 ORTHO05D003473 1.1e-07 62.4 326 23.0
BolC4t25882H Brassica oleracea HOM05D007239 ORTHO05D003473 1.1e-07 62.4 326 23.0
CARHR218160 Cardamine hirsuta HOM05D007239 ORTHO05D003473 3.3e-07 60.8 326 23.0
Thhalv10025411m.g Eutrema salsugineum HOM05D007239 ORTHO05D003473 5.6e-07 60.1 326 22.4
AT4G12830 Arabidopsis thaliana HOM05D007239 ORTHO05D003473 7.3e-07 59.7 326 22.4
A04p09120 Brassica napus HOM05D007239 ORTHO05D003473 7.3e-07 59.7 326 22.4
BraA04t16606Z Brassica rapa HOM05D007239 ORTHO05D003473 7.3e-07 59.7 326 22.4
SEGI_09765 Sequoiadendron giganteum HOM05D007239 ORTHO05D003473 1.6e-06 58.5 66 45.5
AL9U11680 Arabidopsis lyrata HOM05D007239 ORTHO05D003473 2.8e-06 57.8 331 20.8
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 2.8e-06 57.8 47 55.3
AUR62008070 Chenopodium quinoa HOM05D007239 ORTHO05D003473 4.8e-06 57.0 76 38.2
TAR633G1976 Trochodendron aralioides HOM05D007239 ORTHO05D003473 4.8e-06 57.0 78 39.7
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 6.2e-06 56.6 61 42.6
AUR62028655 Chenopodium quinoa HOM05D007239 ORTHO05D003473 8.1e-06 56.2 76 38.2
Lj3g0012405 Lotus japonicus HOM05D007239 ORTHO05D003473 8.1e-06 56.2 76 36.8


User provided reference genes

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