Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 2.2e-191 672.2 346 100.0
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 1.9e-174 615.9 345 92.8
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.6e-173 612.8 345 92.8
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.1e-173 612.5 345 92.2
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.6e-173 611.3 345 92.2
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.3e-172 609.0 352 90.9
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.5e-171 606.3 352 90.6
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.4e-168 595.1 365 86.6
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 2.9e-159 565.5 351 83.5
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 1.3e-146 523.5 351 79.5
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 1.5e-139 500.0 353 73.9
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 1.2e-136 490.3 349 73.1
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 1.5e-136 490.0 352 73.0
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 3.4e-136 488.8 347 73.2
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 8.5e-135 484.2 351 72.1
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 2.7e-133 479.2 329 74.8
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 2.7e-133 479.2 329 74.8
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 3.0e-132 475.7 352 71.3
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 1.5e-131 473.4 351 71.5
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 7.4e-131 471.1 301 77.7
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.3e-130 470.3 352 69.6
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 2.8e-130 469.2 360 69.7
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.1e-129 467.2 349 69.3
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 1.1e-129 467.2 358 69.0
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 4.1e-129 465.3 355 69.6
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 1.2e-128 463.8 351 69.2
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 3.4e-128 462.2 353 70.5
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 5.9e-128 461.5 321 71.3
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 5.9e-128 461.5 347 68.9
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 1.0e-127 460.7 348 70.1
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 1.0e-127 460.7 352 69.9
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 1.7e-127 459.9 353 69.4
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.2e-127 459.5 353 69.1
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 1.4e-126 456.8 349 69.6
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 1.4e-126 456.8 355 69.0
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 3.2e-126 455.7 307 74.6
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 3.2e-126 455.7 307 74.6
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 3.2e-126 455.7 340 69.1
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 4.2e-126 455.3 352 68.8
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 4.2e-126 455.3 350 69.1
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 5.5e-126 454.9 344 69.5
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 1.6e-125 453.4 255 83.9
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 2.1e-125 453.0 346 69.4
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 2.1e-125 453.0 346 69.4
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 2.1e-125 453.0 355 68.7
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 3.6e-125 452.2 385 63.9
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 4.7e-125 451.8 346 67.9
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 4.7e-125 451.8 352 67.3
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 4.7e-125 451.8 347 67.7
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 6.1e-125 451.4 297 75.1
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 7.9e-125 451.1 298 74.8
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 1.0e-124 450.7 351 70.9
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 5.1e-124 448.4 329 71.1
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 6.7e-124 448.0 303 73.3
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 1.1e-123 447.2 347 69.7
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 2.6e-123 446.0 360 66.4
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 3.3e-123 445.7 349 69.6
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 7.4e-123 444.5 351 68.1
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 1.3e-122 443.7 355 66.8
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 2.2e-122 443.0 312 72.4
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 2.4e-121 439.5 293 74.4
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 1.2e-120 437.2 301 72.4
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 1.5e-120 436.8 345 66.1
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 4.5e-120 435.3 352 66.5
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 1.0e-119 434.1 335 68.1
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 1.7e-119 433.3 300 72.0
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 8.5e-119 431.0 343 67.3
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 1.4e-118 430.3 335 68.1
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 1.9e-118 429.9 340 67.6
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 1.6e-117 426.8 339 65.5
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 2.7e-117 426.0 295 72.9
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 2.7e-117 426.0 347 67.4
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 2.7e-117 426.0 327 67.6
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 6.1e-117 424.9 332 68.7
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 8.0e-117 424.5 294 72.1
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 1.8e-116 423.3 310 70.6
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 8.8e-116 421.0 343 65.9
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 8.8e-116 421.0 255 79.6
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 1.1e-115 420.6 258 78.3
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 1.5e-115 420.2 296 72.0
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 2.6e-115 419.5 346 64.7
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 9.7e-115 417.5 337 68.0
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 1.7e-114 416.8 354 65.8
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 4.8e-114 415.2 310 69.7
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 1.1e-113 414.1 289 71.3
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 3.1e-113 412.5 342 65.2
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 3.5e-112 409.1 315 70.2
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 7.5e-107 391.3 229 80.3
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 6.3e-106 388.3 303 66.7
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 1.4e-105 387.1 348 61.8
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 5.9e-104 381.7 314 65.0
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 3.8e-103 379.0 354 60.2
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 4.4e-91 339.0 336 53.0
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 1.7e-90 337.0 316 59.8
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 5.8e-83 312.0 350 53.7
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 2.9e-82 309.7 255 61.6
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 5.4e-81 305.4 295 51.9
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 1.9e-78 297.0 163 86.5
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 7.3e-78 295.0 327 48.3
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 7.5e-75 285.0 173 75.7
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 4.7e-69 265.8 358 44.4
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.8e-68 263.8 187 65.8
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 6.4e-66 255.4 144 80.6
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 5.2e-60 235.7 224 49.1
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 3.5e-56 223.0 132 81.8
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 6.6e-55 218.8 126 83.3
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 6.6e-55 218.8 126 83.3
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.9e-54 217.2 168 67.9
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 2.9e-50 203.4 132 74.2
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 2.2e-42 177.2 356 32.9
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 2.5e-38 163.7 330 34.2
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 5.5e-33 146.0 107 70.1
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 1.6e-32 144.4 238 37.0
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 2.3e-31 140.6 157 57.3
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 4.9e-26 122.9 201 41.8
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 7.9e-24 115.5 83 63.9
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 9.7e-22 108.6 92 58.7
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 2.8e-21 107.1 53 88.7
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 6.1e-16 89.4 65 63.1
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 3.7e-13 80.1 126 39.7
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 8.2e-13 79.0 138 44.2
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 9.1e-12 75.5 126 38.1
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 7.7e-11 72.4 38 84.2
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 3.6e-08 63.5 77 46.8
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 3.6e-08 63.5 77 46.8


User provided reference genes

Program Settings