Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 0.0e+00 1635.5 858 100.0
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 0.0e+00 1244.6 867 78.1
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 0.0e+00 1226.8 898 75.5
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 0.0e+00 1221.5 898 75.2
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 0.0e+00 1214.5 869 77.2
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 0.0e+00 1204.5 901 74.5
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 0.0e+00 1166.4 918 71.8
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 0.0e+00 1127.1 859 73.6
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 2.1e-291 1005.7 936 60.3
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 5.2e-250 868.2 944 55.9
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 2.8e-248 862.4 939 55.7
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 2.0e-177 627.1 979 42.8
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 9.6e-172 608.2 992 42.1
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 6.5e-160 568.9 726 47.5
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 1.2e-137 495.0 948 37.7
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 3.0e-133 480.3 941 37.6
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 2.0e-132 477.6 939 38.0
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 9.7e-132 475.3 904 39.9
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 3.7e-131 473.4 940 37.6
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.2e-129 468.4 809 40.2
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 1.6e-129 468.0 915 39.1
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 5.9e-129 466.1 911 37.7
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 3.8e-128 463.4 923 38.7
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 4.2e-127 459.9 954 37.3
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 7.2e-127 459.1 556 49.5
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 1.4e-125 454.9 893 39.9
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 2.3e-125 454.1 920 38.5
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 3.4e-124 450.3 904 37.8
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 5.7e-124 449.5 904 37.8
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 1.3e-123 448.4 730 40.8
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.1e-122 445.3 900 38.3
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 1.8e-122 444.5 651 43.3
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 2.7e-121 440.7 881 39.0
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 4.5e-121 439.9 911 36.3
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 7.2e-119 432.6 620 43.7
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 3.0e-117 427.2 906 35.4
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 8.3e-115 419.1 922 36.3
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 1.1e-111 408.7 615 42.6
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 1.1e-111 408.7 922 35.4
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 1.5e-111 408.3 891 36.4
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 6.8e-109 399.4 915 35.3
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 2.0e-108 397.9 569 42.4
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 2.6e-108 397.5 811 38.2
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.1e-106 392.1 569 42.4
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 3.2e-106 390.6 913 34.1
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 1.6e-105 388.3 913 34.1
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 1.7e-104 384.8 609 41.9
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 3.9e-104 383.6 921 34.3
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 5.6e-103 379.8 692 38.6
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 5.6e-103 379.8 1033 32.5
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 3.6e-102 377.1 679 39.2
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 4.7e-102 376.7 566 42.8
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 2.0e-100 371.3 692 38.2
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 2.9e-99 367.5 570 40.5
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 8.3e-99 365.9 694 37.9
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 1.4e-98 365.2 918 33.0
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 4.6e-97 360.1 902 34.0
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 1.3e-96 358.6 917 32.8
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 6.6e-96 356.3 660 37.6
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 8.6e-96 355.9 998 33.1
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 9.5e-95 352.4 921 32.6
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 3.4e-92 344.0 579 39.9
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 1.3e-91 342.0 634 37.1
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 6.4e-91 339.7 810 33.7
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.4e-90 338.6 683 36.0
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.6e-89 335.1 965 32.2
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 1.7e-88 331.6 894 33.6
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 3.3e-87 327.4 944 32.3
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 1.1e-85 322.4 884 31.4
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.8e-85 321.6 934 31.8
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 9.9e-84 315.8 741 33.2
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.3e-83 315.5 799 33.4
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 9.2e-82 309.3 800 32.2
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 6.0e-81 306.6 813 32.6
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 1.3e-80 305.4 590 36.4
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.9e-79 301.6 755 34.4
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 1.4e-77 295.4 823 32.1
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 2.0e-76 291.6 880 32.5
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 9.9e-76 289.3 804 32.0
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 2.2e-75 288.1 966 29.8
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 1.1e-74 285.8 517 38.3
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.9e-74 285.0 580 36.6
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 2.4e-74 284.6 685 34.0
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 9.3e-74 282.7 950 29.8
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 2.7e-73 281.2 619 34.6
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 3.5e-73 280.8 938 30.0
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 7.3e-71 273.1 680 33.5
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 1.3e-70 272.3 949 28.7
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 2.8e-70 271.2 964 29.6
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 1.4e-69 268.9 701 30.8
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 2.4e-69 268.1 680 33.4
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 2.6e-68 264.6 363 42.7
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 1.3e-67 262.3 572 35.0
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 2.4e-66 258.1 745 30.3
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 3.2e-66 257.7 711 29.7
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 9.3e-66 256.1 363 41.9
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 1.8e-64 251.9 720 29.6
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 1.0e-56 226.1 366 38.8
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 5.1e-56 223.8 180 57.8
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.1e-53 216.1 377 37.4
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 3.2e-42 177.9 176 48.9
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 1.0e-40 172.9 658 26.6
FvH4_3g29010 Fragaria vesca HOM05D006048 ORTHO05D035641 3.0e-40 171.4 183 61.2
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 6.7e-40 170.2 506 29.6
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 4.1e-37 161.0 610 31.0
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 4.2e-34 151.0 221 44.3
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 4.7e-33 147.5 288 36.8
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 1.4e-32 146.0 297 38.0
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 2.3e-32 145.2 297 38.0
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 2.0e-31 142.1 378 29.4
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 3.3e-31 141.4 372 29.3
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 1.1e-26 126.3 599 24.9
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 3.9e-24 117.9 373 26.5
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.2e-22 112.1 256 35.2
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 3.0e-16 91.7 93 49.5
CiPaw.08G165600 Carya illinoinensis HOM05D006048 ORTHO05D007642 7.5e-15 87.0 191 36.6
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.3e-14 86.3 121 42.1
FvH4_3g17890 Fragaria vesca HOM05D006048 ORTHO05D035641 2.8e-14 85.1 180 42.8
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 1.6e-12 79.3 235 27.2
FAN18G2849 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.0e-11 76.6 62 67.7
FAN11G2287 Fragaria x ananassa HOM05D006048 ORTHO05D035641 1.9e-10 72.4 86 54.7
Atru.chr2.430 Acer truncatum HOM05D006048 ORTHO05D007642 1.2e-09 69.7 128 37.5


User provided reference genes

Program Settings