Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 2.7e-169 598.6 302 100.0
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 1.5e-148 529.6 302 88.7
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.0e-144 516.9 316 83.9
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.0e-144 516.9 302 87.1
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.3e-144 515.8 302 87.4
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.9e-143 512.7 316 82.9
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.9e-143 512.7 302 85.8
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.9e-143 512.7 321 82.9
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 4.8e-134 481.5 302 80.8
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 9.4e-122 440.7 299 74.6
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 3.0e-120 435.6 332 68.7
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 1.5e-119 433.3 304 71.4
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 2.2e-118 429.5 304 72.0
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 1.8e-117 426.4 302 73.8
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 2.4e-117 426.0 302 70.5
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 8.5e-115 417.5 299 71.2
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 2.5e-114 416.0 301 69.8
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 3.2e-114 415.6 305 70.8
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 1.6e-113 413.3 302 66.2
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 8.8e-112 407.5 300 68.7
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 7.4e-111 404.4 303 70.0
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 1.8e-109 399.8 303 68.6
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 1.8e-109 399.8 287 70.4
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 4.1e-109 398.7 303 69.0
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 1.5e-108 396.7 300 68.0
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 1.3e-107 393.7 300 67.7
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 1.3e-107 393.7 301 66.8
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 1.2e-105 387.1 303 65.7
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 8.0e-105 384.4 301 63.8
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 1.0e-104 384.0 301 63.8
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 1.5e-103 380.2 300 64.7
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 1.5e-103 380.2 301 65.1
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 3.3e-103 379.0 304 65.5
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 1.7e-102 376.7 299 63.9
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 2.2e-102 376.3 299 63.9
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 1.1e-101 374.0 301 63.5
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 1.8e-101 373.2 302 62.3
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 4.1e-101 372.1 365 54.5
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 9.1e-101 370.9 228 78.1
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 2.0e-100 369.8 305 62.6
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 2.6e-100 369.4 328 60.4
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 3.5e-100 369.0 279 66.7
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 2.2e-99 366.3 320 59.4
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 2.9e-99 365.9 318 59.1
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 2.9e-99 365.9 295 63.4
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 5.0e-99 365.2 320 59.1
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 6.5e-99 364.8 319 58.9
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 6.5e-99 364.8 320 59.4
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 8.5e-99 364.4 274 69.0
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 1.1e-98 364.0 298 61.1
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 1.2e-97 360.5 241 73.0
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 1.2e-97 360.5 275 67.3
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 1.2e-97 360.5 317 59.0
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 6.1e-97 358.2 317 58.4
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 6.1e-97 358.2 306 61.8
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 1.8e-96 356.7 308 63.0
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 3.0e-96 355.9 300 63.3
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 5.2e-96 355.1 236 74.6
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 1.2e-95 354.0 235 74.9
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 1.5e-95 353.6 298 60.7
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 1.5e-95 353.6 300 60.3
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 2.6e-95 352.8 302 60.9
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 2.8e-94 349.4 272 66.2
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 3.7e-94 349.0 332 55.7
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 4.8e-94 348.6 219 77.2
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 4.8e-94 348.6 278 61.9
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 6.3e-94 348.2 332 55.7
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 8.3e-94 347.8 243 69.1
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 8.3e-94 347.8 332 56.0
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 1.8e-93 346.7 219 75.3
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 3.5e-92 342.4 301 57.8
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 1.9e-90 336.7 276 64.9
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 5.5e-90 335.1 301 60.1
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 2.7e-89 332.8 307 57.7
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 8.0e-89 331.3 273 62.3
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 2.8e-86 322.8 261 58.2
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 4.9e-86 322.0 284 61.6
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 1.8e-85 320.1 205 72.2
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 1.8e-85 320.1 274 59.9
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 3.1e-85 319.3 216 72.2
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 5.0e-83 312.0 197 74.6
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 3.3e-82 309.3 301 55.8
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 4.7e-81 305.4 205 73.2
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 3.4e-79 299.3 216 65.3
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 2.2e-78 296.6 317 54.9
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 3.2e-77 292.7 175 80.6
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 1.5e-74 283.9 271 57.2
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 4.0e-72 275.8 179 74.9
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 2.4e-69 266.5 235 57.9
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 4.1e-69 265.8 236 61.4
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 2.6e-63 246.5 467 37.3
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 3.4e-63 246.1 190 65.8
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 1.7e-62 243.8 186 63.4
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 2.8e-57 226.5 188 62.2
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 8.9e-56 221.5 238 49.6
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.6e-55 219.9 288 47.9
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 1.9e-53 213.8 231 48.5
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 3.2e-53 213.0 217 49.8
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 4.6e-52 209.1 280 41.1
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 1.7e-51 207.2 246 50.0
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 2.1e-49 200.3 239 46.9
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 2.4e-48 196.8 261 46.7
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 3.1e-48 196.4 156 61.5
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 3.8e-46 189.5 144 66.0
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 6.2e-41 172.2 155 59.4
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 8.1e-41 171.8 276 43.1
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 6.6e-35 152.1 157 50.3
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 1.9e-26 124.0 206 34.5
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 2.8e-25 120.2 71 77.5
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 2.6e-23 113.6 69 72.5
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 3.2e-21 106.7 59 88.1
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 5.7e-18 95.9 113 51.3
GSVIVG01000001001 Vitis vinifera HOM05D004613 ORTHO05D006095 9.0e-16 88.6 114 46.5
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 2.2e-14 84.0 102 42.2
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 3.0e-11 73.6 52 63.5
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 3.3e-10 70.1 91 44.0
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 7.4e-10 68.9 49 67.3
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 7.4e-10 68.9 50 66.0
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 7.4e-10 68.9 89 44.9
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 1.3e-09 68.2 145 34.5
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 8.2e-09 65.5 126 36.5
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 8.2e-09 65.5 126 36.5
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 1.4e-08 64.7 92 40.2
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.8e-08 64.3 36 80.6
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.8e-08 64.3 36 80.6
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.8e-08 64.3 36 80.6
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.8e-08 64.3 36 80.6
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.8e-08 64.3 36 80.6
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.8e-08 64.3 36 80.6
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.8e-08 64.3 36 80.6
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 4.1e-08 63.2 56 53.6
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 4.1e-08 63.2 58 51.7
C09p29080 Brassica napus HOM05D004613 ORTHO05D006095 5.3e-08 62.8 118 36.4
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 9.0e-08 62.0 85 41.2
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 9.0e-08 62.0 85 41.2
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 4.5e-07 59.7 49 55.1
C01p25640 Brassica napus HOM05D004613 ORTHO05D006095 5.9e-07 59.3 58 50.0
C09p20670 Brassica napus HOM05D004613 ORTHO05D006095 2.2e-06 57.4 48 56.2
BcaC07g37284 Brassica carinata HOM05D004613 ORTHO05D006095 3.8e-06 56.6 85 40.0
BolC8t47558H Brassica oleracea HOM05D004613 ORTHO05D006095 3.8e-06 56.6 85 40.0
BcaC09g50421 Brassica carinata HOM05D004613 ORTHO05D006095 6.5e-06 55.8 57 47.4


User provided reference genes

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