Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0453191 Rosa chinensis HOM05D008283 ORTHO05D009928 1.2e-46 189.5 97 100.0
FAN02G3211 Fragaria x ananassa HOM05D000160 ORTHO05D000914 9.6e-28 126.7 79 78.5
FAN09G0853 Fragaria x ananassa HOM05D000160 ORTHO05D000914 3.7e-27 124.8 78 79.5
FvH4_6g04760 Fragaria vesca HOM05D000160 ORTHO05D000914 3.4e-25 118.2 74 78.4
FAN14G2913 Fragaria x ananassa HOM05D008283 ORTHO05D009928 3.4e-25 118.2 74 78.4
RcHm_v2.0_MTg0498941 Rosa chinensis HOM05D008283 ORTHO05D009928 2.4e-23 112.1 97 63.9
Nn1g10067 Nelumbo nucifera HOM05D008283 ORTHO05D009928 2.3e-21 105.5 78 67.9
FAN09G4124 Fragaria x ananassa HOM05D000160 ORTHO05D000914 1.3e-19 99.8 63 76.2
FAN17G2731 Fragaria x ananassa HOM05D008283 ORTHO05D009928 8.4e-16 87.0 82 57.3
HanXRQChr15g0485981 Helianthus annuus HOM05D008283 ORTHO05D009928 2.5e-15 85.5 78 56.4
PGR028G0007 Punica granatum HOM05D008283 ORTHO05D009928 2.7e-14 82.0 80 53.8
HanXRQChr04g0098351 Helianthus annuus HOM05D008283 ORTHO05D009928 6.0e-14 80.9 78 51.3
HanXRQChr17g0561471 Helianthus annuus HOM05D008283 ORTHO05D009928 6.0e-14 80.9 78 51.3
HanXRQMTg0579231 Helianthus annuus HOM05D008283 ORTHO05D009928 6.0e-14 80.9 78 51.3
HanXRQMTg0579701 Helianthus annuus HOM05D008283 ORTHO05D009928 6.0e-14 80.9 78 51.3
FAN22G2261 Fragaria x ananassa HOM05D008283 ORTHO05D009928 1.3e-13 79.7 82 53.7
HanXRQChr03g0069121 Helianthus annuus HOM05D008283 ORTHO05D009928 5.1e-13 77.8 78 50.0
Nitab4.5_0001788g0210 Nicotiana tabacum HOM05D008283 ORTHO05D009928 5.1e-13 77.8 77 46.8
arahy.Tifrunner.gnm1.ann1.31RDDR Arachis hypogaea HOM05D008283 ORTHO05D009928 6.7e-13 77.4 73 50.7
arahy.Tifrunner.gnm1.ann1.UF4NHZ Arachis hypogaea HOM05D008283 ORTHO05D009928 6.7e-13 77.4 73 50.7
arahy.Tifrunner.gnm1.ann1.X4VFKB Arachis hypogaea HOM05D008283 ORTHO05D009928 6.7e-13 77.4 73 50.7
Lalb_Chr00c29g0407761 Lupinus albus HOM05D008283 ORTHO05D009928 1.1e-12 76.6 75 49.3
Lalb_Chr00c29g0408321 Lupinus albus HOM05D008283 ORTHO05D009928 1.1e-12 76.6 75 49.3
FAN05G3893 Fragaria x ananassa HOM05D000160 ORTHO05D000914 1.9e-12 75.9 66 60.6
Nitab4.5_0004681g0020 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.9e-12 75.9 73 50.7
Gohir.A11G200616 Gossypium hirsutum HOM05D008283 ORTHO05D009928 2.5e-12 75.5 63 54.0
BcaC05g26890 Brassica carinata HOM05D008283 ORTHO05D009928 9.7e-12 73.6 74 52.7
BolSC28t60335H Brassica oleracea HOM05D008283 ORTHO05D009928 9.7e-12 73.6 74 52.7
BolSC28t60401H Brassica oleracea HOM05D008283 ORTHO05D009928 9.7e-12 73.6 74 52.7
BraSC77t46668Z Brassica rapa HOM05D008283 ORTHO05D009928 9.7e-12 73.6 74 52.7
BraSC48t46259Z Brassica rapa HOM05D008283 ORTHO05D009928 1.3e-11 73.2 74 52.7
Medtr1g041535 Medicago truncatula HOM05D008283 ORTHO05D009928 1.6e-11 72.8 73 50.7
Potri.007G061701 Populus trichocarpa HOM05D008283 ORTHO05D009928 1.6e-11 72.8 44 79.5
SabraMtG0004000 Salix brachista HOM05D008283 ORTHO05D009928 1.6e-11 72.8 44 79.5
Hma1.2p1_0904F.1_g235230 Hydrangea macrophylla HOM05D008283 ORTHO05D009928 4.8e-11 71.2 60 60.0
Lj5g0014228 Lotus japonicus HOM05D008283 ORTHO05D009928 1.1e-10 70.1 74 45.9
LjContig00439g0010892 Lotus japonicus HOM05D008283 ORTHO05D009928 1.1e-10 70.1 74 45.9
Nitab4.5_0000280g0170 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.1e-10 70.1 77 45.5
Nitab4.5_0002418g0110 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.1e-10 70.1 75 49.3
AT2G07820 Arabidopsis thaliana HOM05D008283 ORTHO05D009928 1.8e-10 69.3 73 50.7
Nitab4.5_0002426g0010 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.8e-10 69.3 68 50.0
EL10As7g23793 Beta vulgaris HOM05D004909 ORTHO05D009928 9.0e-10 67.0 78 48.7
Nitab4.5_0000362g0080 Nicotiana tabacum HOM05D008283 ORTHO05D009928 2.6e-09 65.5 68 51.5
Ah.10g028250 Amaranthus hybridus HOM05D008283 ORTHO05D009928 3.4e-09 65.1 76 47.4
Ah.10g028800 Amaranthus hybridus HOM05D008283 ORTHO05D009928 3.4e-09 65.1 76 47.4
AUR62042329 Chenopodium quinoa HOM05D008283 ORTHO05D009928 3.4e-09 65.1 76 47.4
AUR62031778 Chenopodium quinoa HOM05D008283 ORTHO05D009928 4.5e-09 64.7 76 48.7
Nitab4.5_0000664g0220 Nicotiana tabacum HOM05D008283 ORTHO05D009928 4.5e-09 64.7 76 46.1
unitig_87.g27963 Utricularia gibba HOM05D008283 ORTHO05D009928 1.3e-08 63.2 66 42.4
Nn1g10073 Nelumbo nucifera HOM05D008283 ORTHO05D009928 2.2e-08 62.4 76 40.8
TPR.G935 Trifolium pratense HOM05D008283 ORTHO05D009928 2.2e-08 62.4 70 42.9
BraSC159t45721Z Brassica rapa HOM05D008283 ORTHO05D009928 8.5e-08 60.5 47 63.8
Nitab4.5_0001121g0220 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.9e-07 59.3 65 47.7
AUR62002477 Chenopodium quinoa HOM05D008283 ORTHO05D009928 3.2e-07 58.5 94 41.5
Ca_17166_v3 Cicer arietinum L. HOM05D008283 ORTHO05D009928 3.2e-07 58.5 70 40.0
Ca_30751_v3 Cicer arietinum L. HOM05D008283 ORTHO05D009928 3.2e-07 58.5 70 40.0
Nitab4.5_0007800g0030 Nicotiana tabacum HOM05D008283 ORTHO05D009928 3.2e-07 58.5 43 58.1
ATR0273G001 Amborella trichopoda HOM05D017454 ORTHO05D009928 4.2e-07 58.2 78 37.2
Nitab4.5_0000172g0940 Nicotiana tabacum HOM05D008283 ORTHO05D009928 4.2e-07 58.2 67 46.3
Nitab4.5_0001985g0050 Nicotiana tabacum HOM05D008283 ORTHO05D009928 5.5e-07 57.8 43 58.1
COL.COLO4_35489 Corchorus olitorius HOM05D008283 ORTHO05D009928 2.1e-06 55.8 82 37.8
Nitab4.5_0010736g0020 Nicotiana tabacum HOM05D017454 ORTHO05D009928 7.9e-06 53.9 78 41.0
PGSC0003DMG400017853 Solanum tuberosum HOM05D008283 ORTHO05D009928 7.9e-06 53.9 71 39.4


User provided reference genes

Program Settings