Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0453031 Rosa chinensis HOM05D000439 ORTHO05D002302 3.3e-112 409.1 328 100.0
RcHm_v2.0_Chr3g0453041 Rosa chinensis HOM05D000439 ORTHO05D002302 1.5e-32 144.4 152 52.6
RcHm_v2.0_Chr3g0453051 Rosa chinensis HOM05D000439 ORTHO05D002302 1.8e-30 137.5 352 56.2
FvH4_6g04420 Fragaria vesca HOM05D000439 ORTHO05D002302 2.4e-30 137.1 152 51.3
FAN14G3490 Fragaria x ananassa HOM05D000439 ORTHO05D002302 2.4e-30 137.1 152 51.3
FAN09G0983 Fragaria x ananassa HOM05D000439 ORTHO05D002302 3.2e-27 126.7 146 50.0
FAN06G4462 Fragaria x ananassa HOM05D000439 ORTHO05D002302 5.7e-24 115.9 154 46.8
FvH4_7g18700 Fragaria vesca HOM05D019505 ORTHO05D002302 4.9e-23 112.8 154 46.1
FAN06G0028 Fragaria x ananassa HOM05D019505 ORTHO05D002302 4.9e-23 112.8 154 46.1
Prupe.6G334600 Prunus persica HOM05D000439 ORTHO05D002302 7.0e-22 109.0 120 50.8
FAN10G0860 Fragaria x ananassa HOM05D000439 ORTHO05D002302 9.2e-22 108.6 154 45.5
RcHm_v2.0_Chr7g0205851 Rosa chinensis HOM05D000439 ORTHO05D002302 1.1e-19 101.7 116 50.9
FAN13G3290 Fragaria x ananassa HOM05D000439 ORTHO05D002302 1.9e-19 100.9 116 50.0
FAN04G2682 Fragaria x ananassa HOM05D000439 ORTHO05D002302 2.5e-19 100.5 116 49.1
FvH4_5g20491 Fragaria vesca HOM05D000439 ORTHO05D002302 1.4e-17 94.7 116 48.3
FAN18G3868 Fragaria x ananassa HOM05D000439 ORTHO05D002302 1.4e-17 94.7 116 48.3
MD04G1214600 Malus domestica HOM05D000439 ORTHO05D002302 1.5e-16 91.3 121 45.5
RcHm_v2.0_Chr3g0452991 Rosa chinensis HOM05D000439 ORTHO05D002302 2.0e-16 90.9 123 45.5
Prupe.6G334200 Prunus persica HOM05D000439 ORTHO05D002302 2.6e-16 90.5 122 44.3
FvH4_6g04390 Fragaria vesca HOM05D000439 ORTHO05D002302 7.5e-16 89.0 134 42.5
FAN05G4994 Fragaria x ananassa HOM05D000439 ORTHO05D002302 3.7e-15 86.7 134 41.8
Prupe.6G334500 Prunus persica HOM05D000439 ORTHO05D002302 3.7e-15 86.7 132 42.4
FAN09G3873 Fragaria x ananassa HOM05D000439 ORTHO05D002302 6.4e-15 85.9 134 41.0
RcHm_v2.0_Chr3g0453001 Rosa chinensis HOM05D000439 ORTHO05D002302 6.4e-15 85.9 122 43.4
Prupe.1G243600 Prunus persica HOM05D000439 ORTHO05D002302 1.1e-14 85.1 127 43.3
Prupe.6G334700 Prunus persica HOM05D000439 ORTHO05D002302 1.1e-14 85.1 97 47.4
MD12G1228900 Malus domestica HOM05D000439 ORTHO05D002302 2.0e-13 80.9 122 42.6
FvH4_6g04320 Fragaria vesca HOM05D000439 ORTHO05D002302 2.7e-13 80.5 162 37.0
FAN05G1628 Fragaria x ananassa HOM05D000439 ORTHO05D002302 7.8e-13 79.0 121 43.0
Dinv26588 Davidia involucrata HOM05D000439 ORTHO05D002302 1.7e-12 77.8 128 39.8
FAN09G4025 Fragaria x ananassa HOM05D000439 ORTHO05D002302 2.5e-11 73.9 150 37.3
MD04G1214300 Malus domestica HOM05D000439 ORTHO05D002302 2.5e-11 73.9 154 35.7
RcHm_v2.0_Chr3g0453081 Rosa chinensis HOM05D000439 ORTHO05D002302 2.5e-11 73.9 116 41.4
RcHm_v2.0_Chr3g0453091 Rosa chinensis HOM05D000439 ORTHO05D002302 3.3e-11 73.6 159 35.2
CSS0048396 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D002302 4.7e-10 69.7 108 38.9
FvH4_6g04431 Fragaria vesca HOM05D000439 ORTHO05D002302 8.0e-10 68.9 81 48.1
FAN05G0558 Fragaria x ananassa HOM05D000439 ORTHO05D011638 8.0e-10 68.9 192 74.0
FvH4_6g04550 Fragaria vesca HOM05D000439 ORTHO05D002302 1.8e-09 67.8 78 48.7
FvH4_6g04410 Fragaria vesca HOM05D000439 ORTHO05D002302 2.3e-09 67.4 117 38.5
QL03p002685 Quercus lobata HOM05D000439 ORTHO05D002302 6.8e-09 65.9 124 33.9
Thecc.05G251700 Theobroma cacao HOM05D000439 ORTHO05D002302 6.8e-09 65.9 108 37.0
Rhsim07G0176800 Rhododendron simsii HOM05D000439 ORTHO05D002302 8.9e-09 65.5 134 35.8
MD12G1229900 Malus domestica HOM05D000439 ORTHO05D002302 1.2e-08 65.1 110 38.2
Rhsim01G0002600 Rhododendron simsii HOM05D000439 ORTHO05D001363 1.2e-08 65.1 123 37.4
Gohir.A13G100400 Gossypium hirsutum HOM05D000439 ORTHO05D002302 3.4e-08 63.5 107 34.6
Thecc.05G251400 Theobroma cacao HOM05D000439 ORTHO05D002302 3.4e-08 63.5 126 34.1
Gohir.D13G104000 Gossypium hirsutum HOM05D000439 ORTHO05D002302 4.4e-08 63.2 107 35.5
Gorai.013G116600 Gossypium raimondii HOM05D000439 ORTHO05D002302 4.4e-08 63.2 107 34.6
PGSC0003DMG400022488 Solanum tuberosum HOM05D000439 ORTHO05D002302 5.8e-08 62.8 98 38.8
RcHm_v2.0_Chr3g0452981 Rosa chinensis HOM05D000439 ORTHO05D002302 9.8e-08 62.0 73 45.2
QL03p002724 Quercus lobata HOM05D000439 ORTHO05D002302 2.2e-07 60.8 126 33.3
Nitab4.5_0004296g0020 Nicotiana tabacum HOM05D000439 ORTHO05D002302 2.9e-07 60.5 111 36.0
CAN.G134.216 Capsicum annuum HOM05D000439 ORTHO05D002302 3.7e-07 60.1 98 38.8
FAN05G2739 Fragaria x ananassa HOM05D000439 ORTHO05D002302 3.7e-07 60.1 82 45.1
Nitab4.5_0000245g0140 Nicotiana tabacum HOM05D000439 ORTHO05D002302 3.7e-07 60.1 98 37.8
Solyc01g098240.3 Solanum lycopersicum HOM05D000439 ORTHO05D001363 3.7e-07 60.1 80 42.5
arahy.Tifrunner.gnm1.ann1.9L902K Arachis hypogaea HOM05D000439 ORTHO05D002302 4.9e-07 59.7 101 33.7
Duzib106G1037 Durio zibethinus HOM05D000439 ORTHO05D002302 4.9e-07 59.7 93 37.6
Eucgr.B01769 Eucalyptus grandis HOM05D000439 ORTHO05D002302 4.9e-07 59.7 101 34.7
Lj7C482G14 Lonicera japonica HOM05D000439 ORTHO05D002302 6.4e-07 59.3 127 32.3
PGR083G2007 Punica granatum HOM05D000439 ORTHO05D012413 6.4e-07 59.3 119 31.9
RcHm_v2.0_Chr4g0411451 Rosa chinensis HOM05D000439 ORTHO05D002302 6.4e-07 59.3 120 36.7
Duzib177G0767 Durio zibethinus HOM05D000439 ORTHO05D002302 8.3e-07 58.9 107 35.5
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 8.3e-07 58.9 98 35.7
Potri.005G043900 Populus trichocarpa HOM05D000439 ORTHO05D002302 8.3e-07 58.9 140 30.7
QL03p002736 Quercus lobata HOM05D000439 ORTHO05D002302 1.1e-06 58.5 115 32.2
Nitab4.5_0001453g0030 Nicotiana tabacum HOM05D000439 ORTHO05D002302 1.9e-06 57.8 111 34.2
Manes.09G160601 Manihot esculenta HOM05D000439 ORTHO05D002302 2.4e-06 57.4 100 34.0
Sopen01g041820 Solanum pennellii HOM05D000439 ORTHO05D002302 2.4e-06 57.4 109 35.8
SalBow4G2078 Salvia bowleyana HOM05D000439 ORTHO05D002302 3.2e-06 57.0 105 31.4
AUR62002306 Chenopodium quinoa HOM05D000439 ORTHO05D002302 4.1e-06 56.6 98 33.7
ClCG02G012450 Citrullus lanatus HOM05D000439 ORTHO05D002302 4.1e-06 56.6 122 32.0
Potri.005G044000 Populus trichocarpa HOM05D000439 ORTHO05D002302 4.1e-06 56.6 140 30.0
TWI56G0175 Tripterygium wilfordii HOM05D000439 ORTHO05D002302 4.1e-06 56.6 107 34.6
CSS0036023 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D002302 5.4e-06 56.2 98 37.8
MD12G1229200 Malus domestica HOM05D000439 ORTHO05D002302 5.4e-06 56.2 152 32.2
RcHm_v2.0_Chr3g0452961 Rosa chinensis HOM05D012224 ORTHO05D017959 5.4e-06 56.2 149 32.9
MD04G1214400 Malus domestica HOM05D000439 ORTHO05D002302 7.0e-06 55.8 104 34.6
Potri.005G044100 Populus trichocarpa HOM05D000439 ORTHO05D002302 7.0e-06 55.8 140 31.4
Gohir.D11G246820 Gossypium hirsutum HOM05D000439 ORTHO05D002302 9.2e-06 55.5 109 34.9


User provided reference genes

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