Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 7.0e-94 347.4 196 100.0
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.8e-90 335.5 177 91.5
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 6.1e-90 334.3 177 91.0
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 8.0e-90 334.0 177 91.0
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.4e-89 333.2 177 90.4
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 1.2e-85 320.1 177 89.3
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.5e-85 318.5 171 88.9
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.7e-84 316.2 167 91.0
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 2.9e-84 315.5 177 88.7
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.1e-83 313.5 167 89.8
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 5.6e-83 311.2 168 88.7
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 1.5e-75 286.6 161 87.6
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 3.3e-75 285.4 175 77.1
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 2.8e-74 282.3 175 77.7
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 2.8e-74 282.3 175 77.1
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 3.6e-74 282.0 175 76.6
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 4.7e-74 281.6 175 77.7
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 8.0e-74 280.8 175 77.7
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 8.0e-74 280.8 175 77.7
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.1e-73 280.4 176 77.3
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.4e-73 280.0 175 77.1
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.4e-73 280.0 175 77.1
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.4e-73 280.0 175 77.1
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 1.4e-73 280.0 175 77.1
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 1.4e-73 280.0 175 76.6
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 2.3e-73 279.3 175 77.7
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 5.2e-73 278.1 175 76.6
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 6.8e-73 277.7 175 76.6
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 6.8e-73 277.7 175 75.4
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 6.8e-73 277.7 175 75.4
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 6.8e-73 277.7 175 76.6
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 1.2e-72 276.9 175 76.0
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.2e-72 276.9 175 76.0
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 2.0e-72 276.2 175 76.6
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 2.0e-72 276.2 175 76.6
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 5.8e-72 274.6 180 75.6
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 9.8e-72 273.9 168 78.0
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 1.3e-71 273.5 175 75.4
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 1.7e-71 273.1 175 75.4
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 1.7e-71 273.1 167 77.2
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.7e-71 273.1 176 73.9
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 1.7e-71 273.1 175 75.4
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.2e-71 272.7 175 74.9
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 4.9e-71 271.6 175 76.6
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 6.4e-71 271.2 176 75.0
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 6.4e-71 271.2 176 75.0
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 6.4e-71 271.2 176 75.0
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 8.3e-71 270.8 175 73.7
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 8.3e-71 270.8 175 74.3
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 1.1e-70 270.4 175 76.0
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 1.1e-70 270.4 175 74.3
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 1.4e-70 270.0 176 74.4
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 1.9e-70 269.6 175 73.7
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 1.9e-70 269.6 175 70.9
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 2.4e-70 269.2 175 74.3
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 3.2e-70 268.9 175 72.6
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 3.2e-70 268.9 176 74.4
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 4.1e-70 268.5 175 73.7
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 5.4e-70 268.1 176 75.0
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 7.0e-70 267.7 176 74.4
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 9.2e-70 267.3 172 75.0
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 1.6e-69 266.5 177 72.9
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 1.6e-69 266.5 177 72.9
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 1.6e-69 266.5 175 74.3
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.6e-69 266.5 175 73.7
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 2.1e-69 266.2 175 73.7
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 4.6e-69 265.0 176 73.3
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 4.6e-69 265.0 177 72.9
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 6.0e-69 264.6 175 71.4
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 6.0e-69 264.6 175 71.4
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 1.3e-68 263.5 175 73.1
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 2.3e-68 262.7 175 72.6
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 3.0e-68 262.3 175 70.9
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 5.0e-68 261.5 175 70.9
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 5.0e-68 261.5 168 75.6
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 5.0e-68 261.5 176 69.9
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 1.1e-67 260.4 166 72.3
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 2.5e-67 259.2 175 70.3
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 3.3e-67 258.8 175 70.3
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 4.3e-67 258.5 227 60.4
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 4.3e-67 258.5 173 71.1
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 5.6e-67 258.1 159 76.1
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 5.6e-67 258.1 179 71.5
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 9.5e-67 257.3 175 70.3
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 9.5e-67 257.3 169 73.4
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 1.2e-66 256.9 175 70.3
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 2.1e-66 256.1 170 70.0
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 2.8e-66 255.8 175 69.1
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 2.8e-66 255.8 176 70.5
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 6.2e-66 254.6 176 68.2
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 6.2e-66 254.6 175 69.1
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 8.1e-66 254.2 176 71.0
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 1.1e-65 253.8 175 68.6
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 1.4e-65 253.4 177 68.4
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 1.8e-65 253.1 171 71.3
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 2.3e-65 252.7 175 68.0
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 2.3e-65 252.7 171 70.8
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 3.1e-65 252.3 175 67.4
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 3.1e-65 252.3 167 71.9
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 4.0e-65 251.9 168 71.4
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 5.2e-65 251.5 164 72.6
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 6.8e-65 251.1 168 70.8
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 6.8e-65 251.1 167 73.1
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 1.2e-64 250.4 176 68.8
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 1.5e-64 250.0 175 66.9
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.6e-64 249.2 170 69.4
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 2.6e-64 249.2 170 70.0
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 2.6e-64 249.2 170 70.0
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 2.6e-64 249.2 170 70.0
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 3.4e-64 248.8 170 70.0
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 3.4e-64 248.8 170 70.0
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 2.2e-63 246.1 166 70.5
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 2.2e-63 246.1 168 71.4
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 4.9e-63 245.0 175 68.6
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 1.9e-62 243.0 172 69.2
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.9e-62 243.0 175 66.3
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 2.4e-62 242.7 177 66.7
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 3.2e-62 242.3 170 66.5
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 5.4e-62 241.5 174 67.2
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 7.1e-62 241.1 163 69.9
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 7.1e-62 241.1 154 76.0
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 7.1e-62 241.1 171 66.7
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 9.2e-62 240.7 163 69.9
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 4.6e-61 238.4 176 65.9
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 6.0e-61 238.0 166 69.9
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 7.8e-61 237.7 166 67.5
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.7e-60 236.5 156 70.5
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 1.7e-60 236.5 176 64.8
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 3.9e-60 235.3 175 65.7
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 9.5e-59 230.7 157 69.4
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.2e-58 230.3 168 64.9
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 1.4e-57 226.9 177 60.5
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.3e-55 220.3 172 61.0
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 1.7e-52 209.9 169 59.8
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 5.1e-52 208.4 169 59.2
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 1.8e-49 199.9 114 83.3
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 2.3e-44 183.0 122 72.1
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 3.9e-44 182.2 122 70.5
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 1.5e-43 180.3 123 70.7
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 1.5e-43 180.3 123 70.7
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 2.1e-42 176.4 122 67.2
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 5.8e-40 168.3 117 69.2
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 3.8e-39 165.6 189 43.4
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 1.9e-38 163.3 172 45.3
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 3.2e-38 162.5 115 67.8
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 1.2e-37 160.6 86 84.9
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.2e-30 135.6 106 61.3
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.2e-30 135.6 112 58.9
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 7.1e-30 134.8 99 62.6
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 1.2e-29 134.0 95 65.3
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 1.6e-29 133.7 109 63.3
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 1.3e-23 114.0 60 81.7
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 3.2e-22 109.4 183 35.5
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 1.9e-19 100.1 165 35.8
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 2.5e-19 99.8 48 100.0
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 1.3e-18 97.4 54 85.2
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 6.3e-18 95.1 50 94.0
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.8e-17 93.6 67 62.7
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 6.9e-17 91.7 142 38.7
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 1.2e-16 90.9 52 84.6
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 3.2e-14 82.8 117 39.3
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 7.2e-14 81.6 95 43.2
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 3.1e-09 66.2 35 85.7
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 9.1e-09 64.7 63 47.6


User provided reference genes

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