Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 4.9e-218 760.8 364 100.0
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 4.9e-218 760.8 364 100.0
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.7e-64 250.8 358 41.6
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 3.7e-64 249.6 358 41.1
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 6.3e-64 248.8 365 41.9
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 2.4e-63 246.9 365 41.9
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 3.5e-62 243.0 363 41.3
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 4.5e-62 242.7 360 41.4
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 5.0e-61 239.2 362 40.9
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 1.1e-60 238.0 363 39.9
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 2.5e-60 236.9 364 40.4
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 4.2e-60 236.1 359 41.5
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 4.2e-60 236.1 358 40.2
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 5.5e-60 235.7 360 41.7
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 5.5e-60 235.7 360 41.1
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 7.2e-60 235.3 371 39.1
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 9.4e-60 235.0 362 41.7
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 1.2e-59 234.6 364 39.6
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.1e-59 233.8 359 40.7
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 2.7e-59 233.4 360 39.7
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 2.7e-59 233.4 357 42.3
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 2.7e-59 233.4 359 40.9
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 3.6e-59 233.0 366 39.3
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 8.0e-59 231.9 364 39.6
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 1.0e-58 231.5 358 39.4
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 1.4e-58 231.1 358 40.2
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.8e-58 230.7 371 38.5
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 2.3e-58 230.3 360 40.3
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 2.3e-58 230.3 360 39.7
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 3.9e-58 229.6 367 39.2
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 5.2e-58 229.2 356 38.8
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 5.2e-58 229.2 373 40.5
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 1.1e-57 228.0 363 39.1
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.1e-57 228.0 364 39.6
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 2.0e-57 227.3 362 38.7
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 2.6e-57 226.9 361 38.0
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 2.6e-57 226.9 372 39.5
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 3.3e-57 226.5 364 38.5
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 3.3e-57 226.5 339 41.9
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 4.4e-57 226.1 363 38.8
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 9.7e-57 224.9 366 39.6
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 9.7e-57 224.9 363 38.6
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 1.3e-56 224.6 364 39.6
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 1.7e-56 224.2 336 41.4
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 2.2e-56 223.8 360 38.3
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 2.2e-56 223.8 361 39.9
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 2.8e-56 223.4 355 38.9
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 2.8e-56 223.4 360 38.3
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 3.7e-56 223.0 361 39.1
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 4.8e-56 222.6 355 38.6
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 4.8e-56 222.6 361 38.2
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 4.8e-56 222.6 358 38.3
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 4.8e-56 222.6 346 40.2
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 4.8e-56 222.6 361 37.4
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 6.3e-56 222.2 372 40.6
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 6.3e-56 222.2 372 37.9
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 8.2e-56 221.9 363 38.6
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.1e-55 221.5 360 37.2
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.8e-55 220.7 358 36.9
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 1.8e-55 220.7 370 37.8
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 2.4e-55 220.3 359 39.3
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 2.4e-55 220.3 358 39.4
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 2.4e-55 220.3 365 39.5
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 3.1e-55 219.9 362 39.0
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 3.1e-55 219.9 362 39.2
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 7.0e-55 218.8 373 38.9
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 7.0e-55 218.8 358 39.4
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 1.6e-54 217.6 347 38.6
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 1.6e-54 217.6 368 37.0
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 2.6e-54 216.9 370 37.6
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 3.5e-54 216.5 339 40.7
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 7.7e-54 215.3 364 38.7
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 2.2e-53 213.8 361 37.4
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 3.8e-53 213.0 362 37.6
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 3.8e-53 213.0 337 39.8
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 8.5e-53 211.8 368 37.8
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.1e-52 211.5 361 37.7
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.1e-52 211.5 371 36.1
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 1.5e-52 211.1 365 37.5
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 1.5e-52 211.1 326 40.8
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.5e-52 211.1 362 37.0
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 2.5e-52 210.3 361 38.2
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 4.2e-52 209.5 399 34.8
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 5.5e-52 209.1 376 36.7
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.4e-50 204.5 365 37.0
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.8e-50 204.1 385 35.1
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.8e-50 204.1 385 35.1
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 2.3e-50 203.8 329 38.3
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 4.0e-50 203.0 345 38.3
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 8.8e-50 201.8 361 35.2
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 2.0e-49 200.7 365 35.6
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 2.6e-49 200.3 364 35.7
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 7.5e-49 198.7 275 42.5
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 9.8e-49 198.4 365 35.9
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 1.7e-48 197.6 359 35.9
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 2.2e-48 197.2 364 36.8
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 1.1e-47 194.9 358 34.1
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 2.4e-47 193.7 358 36.9
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 7.0e-47 192.2 357 37.0
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 1.6e-46 191.0 381 32.3
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 2.0e-46 190.7 358 36.9
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 7.7e-46 188.7 358 36.6
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 1.0e-45 188.3 362 35.9
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 2.9e-45 186.8 364 36.5
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 5.0e-45 186.0 358 36.6
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 1.1e-44 184.9 333 36.6
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 1.5e-44 184.5 358 35.8
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 5.5e-44 182.6 362 35.9
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 9.4e-44 181.8 358 34.9
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 4.7e-43 179.5 358 35.8
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 8.0e-43 178.7 359 35.1
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 1.8e-42 177.6 267 39.0
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 2.3e-42 177.2 378 33.6
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 3.0e-42 176.8 353 35.7
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 3.0e-42 176.8 353 35.7
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 4.0e-42 176.4 353 35.7
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 6.8e-42 175.6 358 34.9
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 8.8e-42 175.3 362 34.8
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 8.8e-42 175.3 358 34.6
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 1.5e-41 174.5 288 38.5
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 3.4e-41 173.3 292 40.1
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 7.0e-39 165.6 388 34.5
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.6e-38 164.5 374 33.4
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 2.0e-38 164.1 358 33.2
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 2.0e-38 164.1 335 31.6
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 8.6e-37 158.7 291 37.1
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 3.3e-36 156.8 295 34.2
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 6.1e-35 152.5 385 29.1
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.2e-33 148.3 297 36.7
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 3.4e-33 146.7 242 36.0
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 5.4e-31 139.4 342 30.4
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.6e-30 137.9 368 30.2
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 1.5e-28 131.3 294 33.7
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 1.8e-26 124.4 356 28.9
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 4.0e-26 123.2 209 34.4
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 3.4e-25 120.2 174 40.2
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 9.8e-25 118.6 293 30.0
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.7e-24 116.7 288 32.6
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 1.2e-22 111.7 359 28.4
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 9.5e-20 102.1 122 41.0
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 1.8e-18 97.8 139 40.3
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 2.6e-17 94.0 262 29.8
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.4e-15 88.2 312 28.5
RcHm_v2.0_Chr3g0452851 Rosa chinensis HOM05D004497 ORTHO05D346972 4.0e-10 70.1 45 77.8
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 4.4e-09 66.6 325 24.0
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.9e-07 61.2 205 28.8


User provided reference genes

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