Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 2353.9 1207 100.0
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 2198.7 1207 93.5
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2193.3 1207 93.3
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2187.9 1207 92.9
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2187.1 1207 92.8
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2184.5 1207 92.8
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2177.5 1207 92.7
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2172.1 1217 91.8
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 2036.9 1201 86.2
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1993.8 1210 84.0
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1976.4 1200 83.6
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1849.7 1209 78.2
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1847.0 1209 77.8
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1841.6 1205 77.3
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1835.8 1201 77.7
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1827.0 1204 78.2
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1821.2 1208 76.7
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1819.7 1212 76.3
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1808.9 1208 76.2
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1808.1 1209 76.3
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1801.9 1214 75.6
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1801.9 1208 75.1
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1795.8 1206 75.8
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1784.2 1206 74.5
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1783.5 1206 74.9
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1780.8 1204 74.6
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1756.5 1227 72.8
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1753.8 1201 74.4
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1753.4 1206 74.0
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1752.3 1188 75.3
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1750.3 1212 72.5
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1748.4 1200 73.6
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1744.2 1206 73.1
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1734.5 1208 72.5
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1733.4 1205 72.1
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1729.1 1214 73.6
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1729.1 1207 72.9
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1724.9 1212 71.1
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1719.9 1200 73.2
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1719.5 1175 74.4
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1712.6 1204 73.7
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1711.0 1198 73.0
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1707.2 1216 72.7
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1694.9 1198 72.6
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1685.6 1206 70.0
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1684.5 1168 72.2
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1682.2 1198 71.0
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1676.4 1194 70.9
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1675.2 1214 71.8
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1670.6 1181 71.8
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1667.5 1202 71.0
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1666.7 1204 71.1
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1662.1 1195 69.8
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1652.1 1206 70.5
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1651.0 1209 70.4
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1649.4 1213 68.8
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1643.6 1200 69.4
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1642.1 1206 69.3
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1628.2 1205 68.5
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1627.1 1206 70.1
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1627.1 1209 69.0
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1625.1 1213 68.2
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1624.8 1213 68.1
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1624.0 1211 68.4
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1623.6 1205 67.8
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1622.4 1213 68.0
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1618.6 1214 68.0
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1616.3 1214 68.0
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1615.5 1113 72.7
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1613.2 1202 67.8
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1610.1 1203 68.7
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1600.1 1213 67.2
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1593.2 1208 67.6
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1592.0 1203 67.7
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1590.1 1209 69.2
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1582.0 1189 69.1
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1579.7 1211 66.9
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1579.3 1193 67.6
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1579.3 1196 66.6
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1575.8 1199 67.0
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1575.1 1198 67.4
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1571.2 1184 67.7
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1570.4 1200 68.3
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1564.7 1201 66.8
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1562.0 1202 66.3
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1558.9 1197 66.7
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1557.0 1201 66.2
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1538.9 1254 64.4
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1529.6 1192 66.4
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1459.9 1027 71.9
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1453.3 1293 61.2
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1449.1 1135 65.3
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1445.3 1205 62.2
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1432.9 981 74.3
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1404.4 1140 63.3
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1382.1 1205 62.0
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1379.0 1208 59.6
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1370.1 1180 59.7
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1347.4 1204 57.6
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1314.3 1211 57.2
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1263.8 1042 63.2
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1194.9 888 68.5
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1189.9 970 65.7
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1179.1 834 73.1
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1147.9 817 72.3
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1099.7 1150 54.2
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 3.8e-267 925.6 1233 42.1
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 3.6e-265 919.1 1230 42.6
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.3e-262 910.6 1237 43.3
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 2.8e-257 892.9 649 71.3
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 3.4e-255 885.9 1197 44.6
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 1.5e-247 860.5 1182 44.2
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 2.9e-246 856.3 1160 44.0
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 7.8e-244 848.2 1160 43.7
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 4.9e-238 828.9 1205 40.2
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 2.3e-232 810.1 1028 47.1
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.7e-219 767.3 793 52.3
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 3.8e-214 749.6 603 66.0
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 1.9e-213 747.3 1220 37.7
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 8.7e-195 685.3 644 56.2
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.3e-194 682.9 569 61.2
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.4e-178 629.0 538 59.3
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 3.2e-173 613.6 488 68.6
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.8e-171 607.8 418 73.7
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.5e-149 535.0 489 57.1
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 1.9e-128 464.9 319 73.7
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.6e-116 425.2 295 73.2
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 3.3e-85 321.2 1371 24.0
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 3.8e-81 307.8 210 72.9
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.0e-78 299.7 210 69.5
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 6.3e-76 290.4 267 54.7
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 2.4e-67 261.9 197 69.0
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 4.6e-63 247.7 215 61.4
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 3.5e-50 204.9 461 31.7
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.0e-49 203.4 436 32.6
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.6e-42 179.5 109 82.6
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.6e-37 162.2 1251 21.1
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 3.8e-25 121.7 96 67.7
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 2.7e-18 99.0 366 25.4
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 3.5e-18 98.6 172 44.2
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 4.6e-18 98.2 75 65.3
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 2.1e-15 89.4 90 51.1
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 2.1e-15 89.4 73 61.6
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 1.5e-13 83.2 63 66.7
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 2.2e-12 79.3 79 49.4
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 2.2e-12 79.3 50 82.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 2.2e-12 79.3 50 82.0
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 1.1e-11 77.0 79 53.2
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.2e-11 75.5 75 56.0
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 4.1e-11 75.1 62 62.9
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 7.0e-11 74.3 69 52.2
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 2.7e-10 72.4 76 46.1
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.3e-09 69.3 182 29.1
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 1.9e-08 66.2 65 56.9
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.9e-08 66.2 65 56.9
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 3.6e-07 62.0 48 62.5
Sabra13G0031800 Salix brachista HOM05D004384 ORTHO05D037489 1.4e-06 60.1 108 37.0
Sabra13G0031100 Salix brachista HOM05D004384 ORTHO05D037489 1.8e-06 59.7 89 41.6
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 2.3e-06 59.3 36 75.0
CAN.G71.10 Capsicum annuum HOM05D001871 ORTHO05D002022 2.3e-06 59.3 83 44.6


User provided reference genes

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