Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 8.7e-177 623.6 296 100.0
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.1e-160 570.1 299 92.3
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.4e-160 568.2 297 92.6
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.4e-160 568.2 297 92.6
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.4e-160 568.2 299 92.3
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.3e-159 566.6 298 91.6
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.1e-158 561.6 297 91.6
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 1.3e-151 540.0 296 88.5
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 7.0e-150 534.3 295 87.8
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 9.4e-147 523.9 306 82.7
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 3.6e-138 495.4 278 83.1
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 6.1e-138 494.6 281 81.5
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 1.8e-137 493.0 267 85.0
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 2.3e-137 492.7 281 81.1
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 6.8e-137 491.1 291 79.4
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.5e-136 490.0 296 77.4
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 1.5e-136 490.0 290 79.3
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.6e-136 489.2 268 83.6
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 4.4e-136 488.4 275 81.8
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 4.4e-136 488.4 266 82.7
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 4.4e-136 488.4 271 83.8
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 4.4e-136 488.4 303 77.6
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 5.7e-136 488.0 261 84.3
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 7.5e-136 487.6 290 79.3
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 7.5e-136 487.6 277 82.3
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 7.5e-136 487.6 287 79.8
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 9.8e-136 487.3 266 83.1
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 9.8e-136 487.3 261 85.1
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 1.3e-135 486.9 287 79.4
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 2.2e-135 486.1 266 83.1
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 2.8e-135 485.7 287 81.2
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 3.7e-135 485.3 263 84.4
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 6.3e-135 484.6 286 80.8
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 6.3e-135 484.6 276 82.6
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 8.3e-135 484.2 265 83.4
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.4e-134 483.4 288 79.5
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 3.1e-134 482.3 263 84.0
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.1e-134 481.9 276 81.2
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 4.1e-134 481.9 266 82.0
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 5.4e-134 481.5 266 83.1
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 7.0e-134 481.1 281 80.4
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 7.0e-134 481.1 283 79.2
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 9.2e-134 480.7 265 82.3
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 9.2e-134 480.7 263 84.4
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.2e-133 480.3 264 83.7
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 1.6e-133 479.9 291 78.0
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 2.0e-133 479.6 263 83.7
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.0e-133 479.6 289 77.5
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 2.7e-133 479.2 258 84.9
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 4.5e-133 478.4 257 85.2
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 1.3e-132 476.9 259 84.6
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 1.3e-132 476.9 279 79.9
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.9e-132 475.7 275 80.7
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.8e-132 475.3 275 80.0
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 5.0e-132 474.9 275 80.4
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 6.6e-132 474.6 265 81.5
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 8.6e-132 474.2 261 82.8
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 1.5e-131 473.4 294 75.5
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.9e-131 473.0 275 79.6
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 1.9e-131 473.0 278 78.1
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 4.3e-131 471.9 275 79.6
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.2e-130 470.3 289 76.5
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 2.1e-130 469.5 285 77.9
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 2.1e-130 469.5 261 81.2
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 2.1e-130 469.5 263 81.7
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 2.1e-130 469.5 267 80.9
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 2.8e-130 469.2 265 81.1
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 2.8e-130 469.2 262 81.7
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 3.6e-130 468.8 274 78.1
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 3.6e-130 468.8 294 73.8
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 3.6e-130 468.8 267 80.5
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 4.7e-130 468.4 287 77.0
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 4.7e-130 468.4 267 80.9
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 6.1e-130 468.0 263 82.1
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 8.0e-130 467.6 274 77.7
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 8.0e-130 467.6 274 77.7
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 8.0e-130 467.6 289 75.1
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.0e-129 467.2 267 79.8
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 1.4e-129 466.8 265 80.0
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.4e-129 466.8 263 81.0
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 1.4e-129 466.8 282 76.6
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 1.4e-129 466.8 263 81.0
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 3.0e-129 465.7 282 76.2
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 3.0e-129 465.7 263 80.6
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 4.0e-129 465.3 287 77.4
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 4.0e-129 465.3 287 74.9
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 5.2e-129 464.9 274 77.4
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 1.5e-128 463.4 276 77.5
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 1.5e-128 463.4 281 77.6
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 1.5e-128 463.4 281 77.6
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 2.0e-128 463.0 265 79.6
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 2.0e-128 463.0 282 75.9
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 2.0e-128 463.0 278 77.3
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 5.8e-128 461.5 269 79.6
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 1.3e-127 460.3 289 73.7
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 1.7e-127 459.9 266 80.5
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 2.2e-127 459.5 242 86.8
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 3.7e-127 458.8 265 79.2
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 6.4e-127 458.0 282 76.2
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 6.4e-127 458.0 282 76.2
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 8.3e-127 457.6 271 77.1
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.1e-126 457.2 288 73.6
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.4e-126 456.8 289 75.4
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 1.4e-126 456.8 267 79.4
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 2.4e-126 456.1 274 76.3
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 4.1e-126 455.3 281 77.9
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 7.0e-126 454.5 264 80.3
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 7.0e-126 454.5 257 81.7
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 2.7e-125 452.6 265 78.5
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 1.0e-124 450.7 267 79.8
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 1.0e-124 450.7 267 79.8
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 8.6e-124 447.6 266 78.6
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 8.6e-124 447.6 242 83.9
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 1.5e-123 446.8 265 77.0
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 5.2e-121 438.3 233 86.7
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 1.2e-120 437.2 276 73.9
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 2.1e-117 426.4 264 75.8
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 2.1e-117 426.4 260 73.1
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 4.7e-114 415.2 270 72.2
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 6.2e-114 414.8 247 80.6
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 1.4e-113 413.7 217 84.8
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 1.8e-113 413.3 268 72.8
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 4.0e-113 412.1 214 86.4
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 2.4e-110 402.9 228 81.6
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 7.1e-110 401.4 221 81.4
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.6e-109 400.2 279 69.5
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 4.6e-109 398.7 286 68.2
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 1.0e-108 397.5 221 81.4
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.9e-107 393.3 217 80.2
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 7.3e-107 391.3 267 70.0
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 2.4e-102 376.3 208 82.7
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 1.7e-100 370.2 218 75.2
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.2e-98 364.0 265 64.9
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 3.8e-95 352.4 243 69.5
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.3e-92 344.0 271 62.0
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 2.6e-80 303.1 233 61.8
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 3.9e-76 289.3 152 85.5
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.5e-75 287.3 162 80.2
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.5e-75 287.3 187 72.7
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 4.5e-72 275.8 218 64.7
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 6.5e-71 271.9 178 71.3
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 3.9e-68 262.7 165 75.2
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 1.9e-67 260.4 151 78.8
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 2.0e-64 250.4 167 73.1
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.0e-63 248.1 148 77.0
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.5e-56 224.2 129 77.5
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 5.5e-54 215.7 147 70.1
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 3.8e-39 166.4 155 55.5
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 8.9e-20 102.1 90 56.7
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 7.3e-14 82.4 49 73.5
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 9.5e-14 82.0 64 64.1
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 8.0e-13 79.0 50 74.0
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 5.2e-12 76.3 56 64.3


User provided reference genes

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