Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 8.1e-166 587.0 303 100.0
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.9e-159 565.8 303 96.7
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 6.2e-158 560.8 303 95.0
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.1e-157 560.1 299 96.0
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.5e-156 556.2 296 96.3
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 6.4e-155 550.8 299 94.6
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 2.1e-153 545.8 303 90.1
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 1.8e-152 542.7 303 90.4
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 5.3e-149 531.2 303 89.4
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 1.2e-145 520.0 300 87.3
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 2.1e-145 519.2 300 86.0
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 3.0e-144 515.4 303 84.8
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 3.3e-143 511.9 300 85.3
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 1.6e-142 509.6 302 84.1
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 3.7e-142 508.4 300 84.0
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 4.8e-142 508.1 300 84.3
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 1.1e-141 506.9 316 81.0
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 1.4e-141 506.5 300 84.0
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.4e-141 506.5 300 83.7
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.4e-141 506.5 300 84.0
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.1e-141 505.4 300 84.0
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 4.1e-141 505.0 303 83.2
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 9.0e-141 503.8 300 84.0
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 3.4e-140 501.9 301 82.4
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 4.5e-140 501.5 300 83.7
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 5.9e-140 501.1 303 85.1
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 1.0e-139 500.4 303 82.5
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 1.0e-139 500.4 303 83.2
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 2.9e-139 498.8 303 82.2
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.9e-139 498.8 303 81.8
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 3.8e-139 498.4 303 82.8
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 5.0e-139 498.0 301 82.1
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 6.5e-139 497.7 303 81.8
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 6.5e-139 497.7 303 82.8
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 8.5e-139 497.3 303 82.5
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 8.5e-139 497.3 303 82.2
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 1.1e-138 496.9 303 82.2
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 1.1e-138 496.9 302 81.8
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.1e-138 496.9 303 81.8
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 1.4e-138 496.5 303 81.8
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.9e-138 496.1 301 82.1
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 2.5e-138 495.7 303 82.5
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 2.5e-138 495.7 303 81.8
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 2.5e-138 495.7 303 82.2
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 3.2e-138 495.4 302 81.5
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 9.3e-138 493.8 303 82.2
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 1.2e-137 493.4 301 82.1
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 1.2e-137 493.4 303 81.8
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.6e-137 493.0 303 81.2
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 2.1e-137 492.7 301 82.7
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.1e-137 492.7 303 81.2
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 6.1e-137 491.1 301 81.7
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 7.9e-137 490.7 303 81.5
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 1.8e-136 489.6 301 81.7
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 2.3e-136 489.2 303 82.2
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 8.7e-136 487.3 303 81.5
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 1.1e-135 486.9 303 79.5
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 1.1e-135 486.9 300 79.3
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 1.5e-135 486.5 303 80.9
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 7.4e-135 484.2 300 79.3
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 1.3e-134 483.4 300 80.7
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 1.6e-134 483.0 301 79.1
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 1.6e-134 483.0 300 78.7
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 1.6e-134 483.0 303 80.5
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 3.7e-134 481.9 300 78.3
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 1.4e-133 479.9 303 79.5
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.8e-133 479.6 301 81.1
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 3.1e-133 478.8 303 79.9
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 4.1e-133 478.4 301 79.1
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 1.5e-132 476.5 300 79.0
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 2.0e-132 476.1 303 78.9
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 2.0e-132 476.1 303 77.2
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 4.5e-132 474.9 303 78.5
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 4.5e-132 474.9 303 78.5
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.0e-131 473.8 302 78.5
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.9e-131 472.2 303 77.9
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 3.8e-131 471.9 303 78.2
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 5.0e-131 471.5 300 77.7
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 6.5e-131 471.1 300 77.7
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 8.5e-131 470.7 299 78.9
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 1.1e-130 470.3 299 78.6
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 4.2e-130 468.4 321 74.8
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 5.5e-130 468.0 300 77.0
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 7.2e-130 467.6 305 77.4
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 9.4e-130 467.2 303 77.9
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 9.4e-130 467.2 300 78.0
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.1e-129 466.1 303 77.6
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 2.7e-129 465.7 302 77.5
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 2.7e-129 465.7 302 77.8
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 2.7e-129 465.7 302 77.8
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 7.9e-129 464.2 303 76.9
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 1.4e-128 463.4 303 76.9
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 3.0e-128 462.2 302 77.2
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 3.0e-128 462.2 299 77.3
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 5.1e-128 461.5 303 76.6
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 6.7e-128 461.1 303 77.2
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 8.8e-128 460.7 300 76.7
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 4.4e-127 458.4 300 76.3
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 5.7e-127 458.0 340 70.6
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 7.4e-127 457.6 300 75.0
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 3.7e-126 455.3 291 77.3
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 4.8e-126 454.9 303 75.9
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 8.2e-126 454.1 309 74.8
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.4e-125 453.4 301 75.7
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.4e-125 453.4 338 71.0
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 4.1e-125 451.8 303 75.2
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 5.3e-125 451.4 303 74.3
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.0e-124 449.5 302 74.5
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 7.7e-124 447.6 303 74.6
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 1.3e-123 446.8 316 72.2
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 8.5e-123 444.1 303 73.3
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 1.9e-122 443.0 303 72.3
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 3.6e-121 438.7 303 72.6
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 2.4e-117 426.0 241 86.3
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 4.5e-116 421.8 294 70.7
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 7.7e-116 421.0 249 82.3
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 2.2e-115 419.5 259 79.5
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 3.2e-114 415.6 301 72.1
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 7.2e-114 414.5 340 63.8
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 1.8e-112 409.8 312 70.2
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 4.0e-112 408.7 302 65.6
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 1.5e-111 406.8 293 68.9
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 7.5e-111 404.4 300 68.7
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 2.0e-108 396.4 288 68.1
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 1.3e-107 393.7 303 68.3
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 7.0e-101 371.3 509 45.0
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.0e-99 367.5 300 66.0
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 1.2e-97 360.5 305 61.3
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 2.8e-97 359.4 299 60.5
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 6.1e-97 358.2 209 83.7
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 5.7e-95 351.7 209 81.8
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 7.8e-92 341.3 289 57.4
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 1.7e-91 340.1 200 85.0
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 4.7e-89 332.0 220 76.4
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 8.6e-83 311.2 246 68.7
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 6.0e-76 288.5 245 64.9
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.7e-75 287.0 246 58.1
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 4.0e-72 275.8 289 49.8
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 4.7e-65 252.3 154 82.5
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 9.3e-53 211.5 298 39.9
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 4.3e-50 202.6 298 38.6
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 1.2e-47 194.5 130 75.4
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.2e-45 186.4 173 54.3
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 1.1e-40 171.4 102 81.4
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 1.3e-38 164.5 199 51.3
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.6e-33 147.5 84 84.5
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 4.9e-30 136.0 102 68.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.9e-26 124.0 87 77.0
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 4.5e-23 112.8 235 28.9
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 2.5e-21 107.1 121 54.5
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 5.5e-21 105.9 83 66.3
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 3.6e-20 103.2 70 71.4
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 8.8e-19 98.6 86 62.8
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 2.5e-18 97.1 161 38.5
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 3.3e-18 96.7 63 69.8
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 9.7e-18 95.1 144 38.2
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 1.7e-09 67.8 54 66.7
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 3.7e-09 66.6 40 80.0
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 4.5e-07 59.7 57 52.6
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 3.8e-06 56.6 63 54.0


User provided reference genes

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