Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0451551 Rosa chinensis HOM05D002815 ORTHO05D345774 2.8e-46 188.3 102 100.0
Prupe.1G436000 Prunus persica HOM05D002815 ORTHO05D003409 1.1e-08 63.5 66 50.0
RcHm_v2.0_Chr3g0451591 Rosa chinensis HOM05D002815 ORTHO05D035542 3.1e-08 62.0 44 70.5
CANSAT01G1961 Cannabis sativa HOM05D002815 ORTHO05D003409 5.2e-08 61.2 60 53.3
CsaV3_4G004950 Cucumis sativus L. HOM05D002815 ORTHO05D003409 8.9e-08 60.5 60 51.7
CsaV3_UNG177370 Cucumis sativus L. HOM05D002815 ORTHO05D003409 8.9e-08 60.5 60 51.7
MD15G1083500 Malus domestica HOM05D002815 ORTHO05D003409 8.9e-08 60.5 66 47.0
MELO3C017567.2 Cucumis melo HOM05D002815 ORTHO05D003409 2.0e-07 59.3 60 50.0
PGR102G0114 Punica granatum HOM05D002815 ORTHO05D003409 2.0e-07 59.3 60 50.0
ClCG07G009280 Citrullus lanatus HOM05D002815 ORTHO05D003409 2.6e-07 58.9 60 50.0
Hma1.2p1_0375F.1_g138590 Hydrangea macrophylla HOM05D002815 ORTHO05D003409 2.6e-07 58.9 60 50.0
CiPaw.03G135000 Carya illinoinensis HOM05D002815 ORTHO05D003409 4.4e-07 58.2 60 50.0
Lj4g0018156 Lotus japonicus HOM05D002815 ORTHO05D003409 4.4e-07 58.2 60 50.0
Sed0017782 Sechium edule HOM05D002815 ORTHO05D003409 4.4e-07 58.2 60 51.7
Prupe.6G174800 Prunus persica HOM05D002815 ORTHO05D003409 5.8e-07 57.8 60 50.0
Ciclev10025987m.g Citrus clementina HOM05D002815 ORTHO05D003409 7.5e-07 57.4 60 50.0
TWI53G1894 Tripterygium wilfordii HOM05D002815 ORTHO05D003409 7.5e-07 57.4 60 50.0
Potri.007G082000 Populus trichocarpa HOM05D002815 ORTHO05D003409 9.8e-07 57.0 60 48.3
GSVIVG01022216001 Vitis vinifera HOM05D002815 ORTHO05D003409 9.8e-07 57.0 60 48.3
AT5G10010 Arabidopsis thaliana HOM05D002815 ORTHO05D003409 1.3e-06 56.6 60 46.7
Carub.0006s0847 Capsella rubella HOM05D002815 ORTHO05D003409 1.3e-06 56.6 60 46.7
COL.COLO4_11025 Corchorus olitorius HOM05D002815 ORTHO05D003409 1.3e-06 56.6 60 48.3
Nn1g05194 Nelumbo nucifera HOM05D002815 ORTHO05D003409 1.3e-06 56.6 60 48.3
Sed0002780 Sechium edule HOM05D002815 ORTHO05D003409 1.3e-06 56.6 61 47.5
TAR625G0199 Trochodendron aralioides HOM05D002815 ORTHO05D003409 1.3e-06 56.6 60 48.3
Glyma.05G183300 Glycine max HOM05D002815 ORTHO05D003409 1.7e-06 56.2 60 48.3
Glyma.08G141100 Glycine max HOM05D002815 ORTHO05D003409 1.7e-06 56.2 60 48.3
MD12G1240700 Malus domestica HOM05D002815 ORTHO05D003409 1.7e-06 56.2 67 47.8
AL6G20450 Arabidopsis lyrata HOM05D002815 ORTHO05D003409 2.2e-06 55.8 60 46.7
Cpa.g.sc196.4 Carica papaya HOM05D002815 ORTHO05D003409 2.2e-06 55.8 60 51.7
Glyma.04G220100 Glycine max HOM05D002815 ORTHO05D003409 2.2e-06 55.8 60 48.3
Gohir.A11G198500 Gossypium hirsutum HOM05D002815 ORTHO05D003409 2.2e-06 55.8 60 48.3
Gohir.D11G226300 Gossypium hirsutum HOM05D002815 ORTHO05D003409 2.2e-06 55.8 60 48.3
Gorai.007G244200 Gossypium raimondii HOM05D002815 ORTHO05D003409 2.2e-06 55.8 60 48.3
HanXRQChr09g0254771 Helianthus annuus HOM05D002815 ORTHO05D003409 2.2e-06 55.8 61 47.5
Lj1g0001740 Lotus japonicus HOM05D002815 ORTHO05D003409 2.2e-06 55.8 60 48.3
Sc07g0001510 Simmondsia chinensis HOM05D002815 ORTHO05D003409 2.2e-06 55.8 61 47.5
Aqoxy5G01953 Aquilegia oxysepala HOM05D002815 ORTHO05D003409 2.9e-06 55.5 60 46.7
arahy.Tifrunner.gnm1.ann1.HMT8RT Arachis hypogaea HOM05D002815 ORTHO05D003409 2.9e-06 55.5 60 48.3
Eucgr.H04829 Eucalyptus grandis HOM05D002815 ORTHO05D003409 2.9e-06 55.5 60 46.7
Potri.005G083700 Populus trichocarpa HOM05D002815 ORTHO05D003409 2.9e-06 55.5 60 46.7
Solyc04g054180.4 Solanum lycopersicum HOM05D002815 ORTHO05D003409 2.9e-06 55.5 60 46.7
Sopen04g023640 Solanum pennellii HOM05D002815 ORTHO05D003409 2.9e-06 55.5 60 46.7
Actinidia12206 Actinidia chinensis HOM05D002815 ORTHO05D003409 3.7e-06 55.1 60 45.0
CAN.G965.1 Capsicum annuum HOM05D002815 ORTHO05D003409 3.7e-06 55.1 60 46.7
CDE02G3240 Ceratophyllum demersum HOM05D002815 ORTHO05D003409 3.7e-06 55.1 60 50.0
Dinv42702 Davidia involucrata HOM05D002815 ORTHO05D003409 3.7e-06 55.1 60 46.7
Gohir.A12G092900 Gossypium hirsutum HOM05D002815 ORTHO05D003409 3.7e-06 55.1 60 46.7
Oeu028529.1 Olea europaea HOM05D002815 ORTHO05D003409 3.7e-06 55.1 60 46.7
QL06p032363 Quercus lobata HOM05D002815 ORTHO05D003409 3.7e-06 55.1 60 46.7
PGSC0003DMG400012949 Solanum tuberosum HOM05D002815 ORTHO05D003409 3.7e-06 55.1 60 46.7
Aa31LG3G17120 Aethionema arabicum HOM05D002815 ORTHO05D003409 4.9e-06 54.7 60 46.7
CSS0001160 Camellia sinensis var. sinensis HOM05D002815 ORTHO05D003409 4.9e-06 54.7 60 45.0
CSS0027096 Camellia sinensis var. sinensis HOM05D002815 ORTHO05D003409 4.9e-06 54.7 60 45.0
Manes.12G141500 Manihot esculenta HOM05D002815 ORTHO05D003409 4.9e-06 54.7 60 45.0
TWI77G0240 Tripterygium wilfordii HOM05D002815 ORTHO05D003409 4.9e-06 54.7 60 46.7
Actinidia28889 Actinidia chinensis HOM05D002815 ORTHO05D003409 6.4e-06 54.3 60 45.0
BcaB08g37149 Brassica carinata HOM05D002815 ORTHO05D003409 6.4e-06 54.3 60 46.7
BcaC04g19355 Brassica carinata HOM05D002815 ORTHO05D003409 6.4e-06 54.3 60 46.7
A10p27480 Brassica napus HOM05D002815 ORTHO05D003409 6.4e-06 54.3 60 46.7
BraA10t44800Z Brassica rapa HOM05D002815 ORTHO05D003409 6.4e-06 54.3 60 46.7
CiPaw.04G092700 Carya illinoinensis HOM05D002815 ORTHO05D003409 6.4e-06 54.3 60 46.7
Ca_17698_v3 Cicer arietinum L. HOM05D002815 ORTHO05D003409 6.4e-06 54.3 60 46.7
Phvul.002G264400 Phaseolus vulgaris HOM05D002815 ORTHO05D003409 6.4e-06 54.3 60 46.7
RhsimUnG0215100 Rhododendron simsii HOM05D002815 ORTHO05D003409 6.4e-06 54.3 60 45.0
Sp6g33390 Schrenkiella parvula HOM05D002815 ORTHO05D003409 6.4e-06 54.3 60 46.7
TPR.G7302 Trifolium pratense HOM05D002815 ORTHO05D003409 6.4e-06 54.3 60 46.7
VMungo0251G0260 Vigna mungo HOM05D002815 ORTHO05D003409 6.4e-06 54.3 60 46.7
Gohir.A11G053400 Gossypium hirsutum HOM05D002815 ORTHO05D003409 8.3e-06 53.9 60 48.3
Gohir.D11G056900 Gossypium hirsutum HOM05D002815 ORTHO05D003409 8.3e-06 53.9 60 48.3
Gorai.007G062100 Gossypium raimondii HOM05D002815 ORTHO05D003409 8.3e-06 53.9 60 48.3
Psat7g052080 Pisum sativum HOM05D002815 ORTHO05D003409 8.3e-06 53.9 60 46.7
Thecc.01G111500 Theobroma cacao HOM05D002815 ORTHO05D003409 8.3e-06 53.9 60 46.7


User provided reference genes

Program Settings