Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 1.7e-114 416.0 209 100.0
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 7.3e-65 251.1 131 98.5
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 3.6e-64 248.8 131 97.7
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 1.1e-63 247.3 131 96.9
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 4.0e-63 245.4 131 96.2
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 1.1e-60 237.3 131 93.9
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 1.9e-60 236.5 131 92.4
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 4.1e-60 235.3 131 90.8
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 7.0e-60 234.6 131 92.4
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 9.2e-60 234.2 131 90.1
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 9.2e-60 234.2 131 90.8
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 1.2e-59 233.8 131 90.8
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 2.7e-59 232.6 131 91.6
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 4.6e-59 231.9 131 90.8
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 4.6e-59 231.9 131 90.8
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 4.6e-59 231.9 131 90.1
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 4.6e-59 231.9 131 90.1
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 4.6e-59 231.9 131 91.6
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 4.6e-59 231.9 131 90.1
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 6.0e-59 231.5 131 89.3
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 7.8e-59 231.1 131 91.6
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 7.8e-59 231.1 130 90.0
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 7.8e-59 231.1 131 89.3
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 7.8e-59 231.1 140 85.0
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 1.0e-58 230.7 131 90.8
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 1.0e-58 230.7 131 90.1
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 1.0e-58 230.7 131 87.8
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 1.3e-58 230.3 131 90.1
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 1.3e-58 230.3 131 90.8
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 1.7e-58 229.9 131 88.5
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 1.7e-58 229.9 131 90.1
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 1.7e-58 229.9 131 90.1
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 2.3e-58 229.6 131 89.3
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 2.3e-58 229.6 131 88.5
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 2.3e-58 229.6 131 88.5
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 2.3e-58 229.6 131 88.5
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 3.0e-58 229.2 131 88.5
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 3.0e-58 229.2 135 85.9
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 3.9e-58 228.8 129 89.9
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 3.9e-58 228.8 131 87.0
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 6.6e-58 228.0 131 89.3
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 6.6e-58 228.0 131 90.1
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 6.6e-58 228.0 131 89.3
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 6.6e-58 228.0 131 85.5
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 8.6e-58 227.6 131 88.5
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 8.6e-58 227.6 131 88.5
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.5e-57 226.9 131 87.8
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.5e-57 226.9 131 87.8
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 1.5e-57 226.9 131 86.3
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 1.9e-57 226.5 131 87.8
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 1.9e-57 226.5 131 87.8
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 1.9e-57 226.5 131 87.8
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 1.9e-57 226.5 131 88.5
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 2.5e-57 226.1 131 87.8
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 2.5e-57 226.1 131 89.3
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 3.3e-57 225.7 131 87.0
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 3.3e-57 225.7 131 86.3
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 3.3e-57 225.7 131 87.0
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 3.3e-57 225.7 131 89.3
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 3.3e-57 225.7 131 87.8
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 3.3e-57 225.7 131 87.0
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 3.3e-57 225.7 131 87.0
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 3.3e-57 225.7 131 87.8
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 3.3e-57 225.7 131 86.3
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 4.3e-57 225.3 131 87.0
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.3e-57 225.3 131 87.0
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 4.3e-57 225.3 131 87.8
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 4.3e-57 225.3 136 84.6
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 4.3e-57 225.3 131 90.1
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 4.3e-57 225.3 131 86.3
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 4.3e-57 225.3 131 87.0
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 5.6e-57 224.9 131 87.0
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 5.6e-57 224.9 131 87.0
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 7.3e-57 224.6 131 89.3
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 7.3e-57 224.6 131 86.3
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 9.5e-57 224.2 126 88.9
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 9.5e-57 224.2 131 86.3
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 9.5e-57 224.2 131 87.0
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 1.2e-56 223.8 131 87.8
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 1.2e-56 223.8 131 86.3
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 1.2e-56 223.8 131 86.3
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 1.6e-56 223.4 131 84.0
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 2.1e-56 223.0 131 86.3
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 2.1e-56 223.0 131 85.5
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 2.8e-56 222.6 126 88.1
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 3.6e-56 222.2 165 72.1
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 3.6e-56 222.2 126 87.3
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 3.6e-56 222.2 126 87.3
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 3.6e-56 222.2 126 87.3
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 3.6e-56 222.2 126 87.3
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 3.6e-56 222.2 126 87.3
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 3.6e-56 222.2 126 87.3
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 3.6e-56 222.2 126 87.3
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 3.6e-56 222.2 129 86.8
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 3.6e-56 222.2 129 86.8
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 4.7e-56 221.9 126 85.7
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 4.7e-56 221.9 131 83.2
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 4.7e-56 221.9 131 86.3
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 6.2e-56 221.5 129 86.8
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 6.2e-56 221.5 131 84.0
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 8.1e-56 221.1 129 85.3
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 8.1e-56 221.1 126 86.5
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 8.1e-56 221.1 126 86.5
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 8.1e-56 221.1 126 86.5
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 8.1e-56 221.1 131 86.3
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 1.1e-55 220.7 131 84.7
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 1.1e-55 220.7 131 85.5
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 1.4e-55 220.3 129 83.7
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 1.4e-55 220.3 131 86.3
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 1.8e-55 219.9 126 85.7
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 1.8e-55 219.9 126 85.7
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 1.8e-55 219.9 126 85.7
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 1.8e-55 219.9 131 87.0
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 2.3e-55 219.5 131 85.5
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.1e-55 219.2 131 84.0
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 3.1e-55 219.2 131 84.7
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 4.0e-55 218.8 131 86.3
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 4.0e-55 218.8 131 86.3
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 4.0e-55 218.8 131 84.0
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 5.2e-55 218.4 115 95.7
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 6.8e-55 218.0 130 83.8
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 6.8e-55 218.0 131 83.2
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 1.5e-54 216.9 129 85.3
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.6e-54 216.1 131 84.0
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 2.6e-54 216.1 131 84.7
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 4.4e-54 215.3 133 82.7
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 7.5e-54 214.5 129 84.5
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 7.5e-54 214.5 131 84.7
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 7.5e-54 214.5 131 84.7
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 1.3e-53 213.8 115 94.8
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.7e-53 213.4 131 83.2
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 4.9e-53 211.8 115 93.0
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 1.1e-52 210.7 139 78.4
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.4e-52 209.5 131 83.2
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 3.2e-52 209.1 139 77.7
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 4.1e-52 208.8 115 92.2
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 3.0e-50 202.6 110 93.6
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 6.6e-50 201.4 115 89.6
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 8.6e-50 201.1 111 90.1
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 8.6e-50 201.1 161 68.9
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 2.5e-49 199.5 156 71.2
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 4.3e-49 198.7 133 73.7
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 5.6e-49 198.4 122 76.2
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 1.8e-47 193.4 114 79.8
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 2.4e-47 193.0 128 75.8
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 5.2e-47 191.8 122 81.1
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 8.9e-47 191.0 129 79.1
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 1.7e-45 186.8 124 69.4
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.8e-45 185.7 117 81.2
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 6.4e-45 184.9 100 92.0
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 1.9e-44 183.3 123 71.5
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.4e-44 183.0 105 83.8
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.4e-44 183.0 105 83.8
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.4e-44 183.0 113 77.9
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.3e-41 172.6 102 80.4
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 7.3e-41 171.4 98 84.7
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 2.1e-40 169.9 115 80.0
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 2.1e-40 169.9 115 80.0
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 5.8e-38 161.8 108 69.4
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.3e-37 160.6 113 70.8
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.7e-37 160.2 131 69.5
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 1.7e-37 160.2 114 66.7
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 6.4e-37 158.3 113 63.7
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 4.2e-36 155.6 129 65.9
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 4.6e-35 152.1 89 87.6
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 6.0e-35 151.8 103 75.7
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 1.5e-33 147.1 82 86.6
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 2.1e-32 143.3 82 84.1
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 1.1e-31 141.0 82 85.4
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 2.7e-27 126.3 80 80.0
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 2.3e-26 123.2 77 75.3
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 1.5e-25 120.6 78 78.2
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 2.5e-25 119.8 113 59.3
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 1.6e-24 117.1 112 47.3
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.4e-23 114.0 63 88.9
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 3.1e-23 112.8 102 65.7
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 2.2e-21 106.7 68 76.5
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 1.6e-19 100.5 67 77.6
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 2.1e-19 100.1 52 92.3
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 6.0e-19 98.6 52 90.4
SHI24544 Sapria himalayana HOM05D003908 ORTHO05D000023 1.8e-18 97.1 67 71.6
Sopen12g012850 Solanum pennellii HOM05D003908 ORTHO05D004488 5.3e-15 85.5 58 77.6
AUR62011951 Chenopodium quinoa HOM05D003908 ORTHO05D004488 1.7e-13 80.5 52 73.1
Peaxi162Scf01294g00317 Petunia axillaris HOM05D003908 ORTHO05D004488 1.5e-09 67.4 35 88.6
CSS0012932 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.5e-09 66.6 35 82.9


User provided reference genes

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