Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0450861 Rosa chinensis HOM05D009166 ORTHO05D035533 4.1e-43 177.6 84 100.0
RcHm_v2.0_Chr5g0058511 Rosa chinensis HOM05D009166 ORTHO05D000001 8.9e-30 133.3 81 76.5
RcHm_v2.0_Chr4g0431731 Rosa chinensis HOM05D009166 ORTHO05D000001 1.2e-29 132.9 74 81.1
RcHm_v2.0_Chr3g0448481 Rosa chinensis HOM05D009166 ORTHO05D000001 7.0e-27 123.6 71 78.9
RcHm_v2.0_Chr6g0266721 Rosa chinensis HOM05D000002 ORTHO05D000001 9.2e-27 123.2 70 77.1
RcHm_v2.0_Chr2g0159441 Rosa chinensis HOM05D000002 ORTHO05D000001 1.0e-25 119.8 83 67.5
RcHm_v2.0_Chr6g0247061 Rosa chinensis HOM05D009166 ORTHO05D035533 1.1e-19 99.8 63 74.6
Sabra18G0120700 Salix brachista HOM05D000002 ORTHO05D000001 2.4e-11 72.0 62 51.6
Sabra15G0028100 Salix brachista HOM05D000002 ORTHO05D000001 7.1e-11 70.5 62 50.0
RcHm_v2.0_Chr7g0234441 Rosa chinensis HOM05D013433 ORTHO05D000001 1.6e-10 69.3 71 45.1
RcHm_v2.0_Chr3g0448951 Rosa chinensis HOM05D016059 ORTHO05D025540 2.1e-10 68.9 61 45.9
FvH4_1g26621 Fragaria vesca HOM05D013433 ORTHO05D000001 2.7e-10 68.6 68 45.6
FvH4_5g01072 Fragaria vesca HOM05D009166 ORTHO05D035533 2.7e-10 68.6 53 56.6
Hma1.2p1_1458F.1_g284730 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.7e-10 68.6 77 45.5
RcHm_v2.0_Chr7g0200091 Rosa chinensis HOM05D000002 ORTHO05D000001 3.5e-10 68.2 62 50.0
RcHm_v2.0_Chr7g0203981 Rosa chinensis HOM05D000002 ORTHO05D000001 3.5e-10 68.2 62 50.0
RcHm_v2.0_Chr2g0119341 Rosa chinensis HOM05D000002 ORTHO05D000001 1.0e-09 66.6 61 47.5
FvH4_7g10872 Fragaria vesca HOM05D013433 ORTHO05D000001 1.3e-09 66.2 68 45.6
RcHm_v2.0_Chr2g0117291 Rosa chinensis HOM05D010729 ORTHO05D000001 1.3e-09 66.2 76 42.1
RcHm_v2.0_Chr2g0136201 Rosa chinensis HOM05D000002 ORTHO05D000001 1.3e-09 66.2 62 50.0
Hma1.2p1_0445F.1_g154480 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.7e-09 65.9 77 44.2
FvH4_4g27903 Fragaria vesca HOM05D009166 ORTHO05D045534 5.1e-09 64.3 46 58.7
RcHm_v2.0_Chr2g0117741 Rosa chinensis HOM05D000002 ORTHO05D000001 6.6e-09 63.9 62 48.4
Rhsim04G0108900 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.1e-08 63.2 61 45.9
TAR180G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.5e-08 62.8 75 41.3
RcHm_v2.0_Chr1g0347771 Rosa chinensis HOM05D000002 ORTHO05D000001 1.9e-08 62.4 61 44.3
FvH4_1g15351 Fragaria vesca HOM05D000002 ORTHO05D000001 2.5e-08 62.0 61 42.6
FvH4_7g24921 Fragaria vesca HOM05D013433 ORTHO05D000001 2.5e-08 62.0 61 44.3
Hma1.2p1_0110F.1_g052720 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.5e-08 62.0 62 43.5
Rhsim05G0062600 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.5e-08 62.0 83 37.3
MD11G1242500 Malus domestica HOM05D000002 ORTHO05D000001 4.3e-08 61.2 60 43.3
RcHm_v2.0_Chr3g0461251 Rosa chinensis HOM05D013433 ORTHO05D000001 4.3e-08 61.2 43 58.1
Hma1.2p1_0198F.1_g085460 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.6e-08 60.8 61 45.9
RcHm_v2.0_Chr5g0004361 Rosa chinensis HOM05D000002 ORTHO05D000001 5.6e-08 60.8 64 43.8
MD12G1231800 Malus domestica HOM05D000002 ORTHO05D000001 9.6e-08 60.1 64 42.2
Atru.chr9.1635 Acer truncatum HOM05D000002 ORTHO05D000001 1.2e-07 59.7 66 48.5
Hma1.2p1_0840F.1_g226720 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-07 59.7 80 40.0
Hma1.2p1_1768F.1_g301510 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-07 59.7 80 40.0
Hma1.2p1_3787F.1_g337595 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-07 59.7 80 40.0
Hma1.2p1_3787F.1_g337600 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-07 59.7 80 40.0
RcHm_v2.0_Chr5g0012631 Rosa chinensis HOM05D013433 ORTHO05D000001 1.2e-07 59.7 62 46.8
Hma1.2p1_1446F.1_g283970 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.6e-07 59.3 80 38.8
MD12G1254800 Malus domestica HOM05D002861 ORTHO05D003104 1.6e-07 59.3 74 39.2
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 1.6e-07 59.3 62 45.2
FvH4_2g06411 Fragaria vesca HOM05D000002 ORTHO05D000001 2.1e-07 58.9 61 41.0
Rhsim09G0019300 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.1e-07 58.9 78 38.5
MD12G1254500 Malus domestica HOM05D002861 ORTHO05D003104 2.8e-07 58.5 83 37.3
MD17G1109500 Malus domestica HOM05D000002 ORTHO05D000001 2.8e-07 58.5 65 40.0
RcHm_v2.0_Chr5g0017791 Rosa chinensis HOM05D016059 ORTHO05D000001 2.8e-07 58.5 51 49.0
MELO3C013392.2 Cucumis melo HOM05D000002 ORTHO05D000001 3.6e-07 58.2 66 39.4
Prupe.2G201300 Prunus persica HOM05D000010 ORTHO05D000001 3.6e-07 58.2 62 46.8
VMungo0251G0530 Vigna mungo HOM05D000002 ORTHO05D037837 3.6e-07 58.2 74 36.5
FvH4_5g36481 Fragaria vesca HOM05D013433 ORTHO05D000001 4.7e-07 57.8 61 41.0
FvH4_3g38081 Fragaria vesca HOM05D000002 ORTHO05D000001 6.2e-07 57.4 64 42.2
RcHm_v2.0_Chr2g0156571 Rosa chinensis HOM05D000002 ORTHO05D000001 6.2e-07 57.4 61 41.0
Sabra13G0070400 Salix brachista HOM05D000002 ORTHO05D000001 6.2e-07 57.4 82 36.6
MD16G1247000 Malus domestica HOM05D000002 ORTHO05D003361 8.1e-07 57.0 83 37.3
RcHm_v2.0_Chr2g0124571 Rosa chinensis HOM05D000011 ORTHO05D000157 8.1e-07 57.0 83 39.8
RcHm_v2.0_Chr2g0141981 Rosa chinensis HOM05D000002 ORTHO05D000001 8.1e-07 57.0 61 39.3
RcHm_v2.0_Chr1g0349331 Rosa chinensis HOM05D000002 ORTHO05D000001 1.1e-06 56.6 62 43.5
Sed0010177 Sechium edule HOM05D000002 ORTHO05D000001 1.1e-06 56.6 75 40.0
CSS0007133 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-06 56.2 60 38.3
Hma1.2p1_2812F.1_g328890 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 1.4e-06 56.2 59 42.4
CSS0021158 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-06 55.8 92 38.0
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-06 55.8 69 42.0
FvH4_4g33449 Fragaria vesca HOM05D000002 ORTHO05D000001 1.8e-06 55.8 68 42.6
Prupe.8G185100 Prunus persica HOM05D000002 ORTHO05D000001 1.8e-06 55.8 72 40.3
RcHm_v2.0_Chr4g0436951 Rosa chinensis HOM05D000002 ORTHO05D000001 1.8e-06 55.8 62 41.9
RcHm_v2.0_Chr1g0366871 Rosa chinensis HOM05D000062 ORTHO05D000043 2.4e-06 55.5 62 41.9
GSVIVG01034817001 Vitis vinifera HOM05D000080 ORTHO05D000053 2.4e-06 55.5 82 37.8
CSS0011950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-06 55.1 60 36.7
ECA234G0657 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.1e-06 55.1 65 43.1
Hma1.2p1_0602F.1_g187610 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.1e-06 55.1 60 38.3
Hma1.2p1_1358F.1_g277990 Hydrangea macrophylla HOM05D011982 ORTHO05D000001 3.1e-06 55.1 77 36.4
RcHm_v2.0_Chr5g0025271 Rosa chinensis HOM05D000002 ORTHO05D000001 3.1e-06 55.1 60 40.0
Hma1.2p1_0660F.1_g197730 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.0e-06 54.7 58 37.9
RcHm_v2.0_Chr1g0344491 Rosa chinensis HOM05D000002 ORTHO05D000001 4.0e-06 54.7 61 39.3
RcHm_v2.0_Chr2g0174291 Rosa chinensis HOM05D000002 ORTHO05D000001 4.0e-06 54.7 61 37.7
RcHm_v2.0_Chr5g0032551 Rosa chinensis HOM05D000002 ORTHO05D000001 4.0e-06 54.7 80 37.5
SEGI_13448 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 4.0e-06 54.7 61 41.0
CSS0025416 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.2e-06 54.3 82 35.4
ECA233G3870 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.2e-06 54.3 77 41.6
Prupe.8G185000 Prunus persica HOM05D000002 ORTHO05D000001 5.2e-06 54.3 63 42.9
RcHm_v2.0_Chr5g0077241 Rosa chinensis HOM05D000002 ORTHO05D000001 6.9e-06 53.9 61 37.7
Sabra05G0021700 Salix brachista HOM05D000002 ORTHO05D000001 6.9e-06 53.9 83 34.9
TPR.G8161 Trifolium pratense HOM05D000002 ORTHO05D000001 6.9e-06 53.9 61 41.0
Atru.chr2.2580 Acer truncatum HOM05D000002 ORTHO05D000001 9.0e-06 53.5 70 37.1
FvH4_6g11492 Fragaria vesca HOM05D000002 ORTHO05D000001 9.0e-06 53.5 78 38.5
Rhsim05G0196600 Rhododendron simsii HOM05D000002 ORTHO05D000001 9.0e-06 53.5 84 35.7


User provided reference genes

Program Settings