Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0450481 Rosa chinensis HOM05D001376 ORTHO05D003384 1.4e-62 242.7 115 100.0
FAN14G2565 Fragaria x ananassa HOM05D001376 ORTHO05D003384 1.5e-24 116.3 60 93.3
Prupe.6G345700 Prunus persica HOM05D001376 ORTHO05D003384 2.3e-20 102.4 65 75.4
FAN02G2578 Fragaria x ananassa HOM05D001376 ORTHO05D003384 3.9e-20 101.7 65 81.5
FvH4_6g02580 Fragaria vesca HOM05D001376 ORTHO05D003384 9.7e-19 97.1 96 59.4
Manes.08G136700 Manihot esculenta HOM05D001376 ORTHO05D003384 1.3e-18 96.7 65 72.3
CSS0032755 Camellia sinensis var. sinensis HOM05D001376 ORTHO05D003384 1.4e-17 93.2 65 70.8
FAN05G5449 Fragaria x ananassa HOM05D001376 ORTHO05D003384 2.4e-17 92.4 62 77.4
MD12G1244000 Malus domestica HOM05D001376 ORTHO05D003384 2.4e-17 92.4 65 69.2
CiPaw.08G121600 Carya illinoinensis HOM05D001376 ORTHO05D003384 3.1e-17 92.0 67 65.7
Cfa006393 Carpinus fangiana HOM05D001376 ORTHO05D003384 1.2e-16 90.1 65 69.2
FAN05G5193 Fragaria x ananassa HOM05D001376 ORTHO05D003384 1.5e-16 89.7 60 78.3
Haze_04385 Corylus avellana HOM05D001376 ORTHO05D003384 3.4e-16 88.6 60 73.3
Duzib128G1990 Durio zibethinus HOM05D001376 ORTHO05D003384 4.5e-16 88.2 65 70.8
QL03p027781 Quercus lobata HOM05D001376 ORTHO05D003384 4.5e-16 88.2 66 69.7
Thecc.05G280200 Theobroma cacao HOM05D001376 ORTHO05D003384 4.5e-16 88.2 65 67.7
CANSAT54G2402 Cannabis sativa HOM05D001376 ORTHO05D003384 1.3e-15 86.7 68 67.6
GSVIVG01036237001 Vitis vinifera HOM05D001376 ORTHO05D003384 2.9e-15 85.5 65 66.2
Potri.005G056100 Populus trichocarpa HOM05D001376 ORTHO05D003384 3.8e-15 85.1 65 66.2
Potri.013G043000 Populus trichocarpa HOM05D001376 ORTHO05D003384 5.0e-15 84.7 65 66.2
Actinidia18371 Actinidia chinensis HOM05D001376 ORTHO05D003384 6.5e-15 84.3 65 66.2
Ca_09432_v3 Cicer arietinum L. HOM05D001376 ORTHO05D003384 6.5e-15 84.3 66 68.2
Glyma.03G248200 Glycine max HOM05D001376 ORTHO05D003384 6.5e-15 84.3 94 53.2
arahy.Tifrunner.gnm1.ann1.QL2VNI Arachis hypogaea HOM05D001376 ORTHO05D003384 8.5e-15 84.0 74 66.2
arahy.Tifrunner.gnm1.ann1.UPVY9X Arachis hypogaea HOM05D001376 ORTHO05D003384 8.5e-15 84.0 74 66.2
Manes.09G150900 Manihot esculenta HOM05D001376 ORTHO05D003384 1.4e-14 83.2 65 66.2
Dinv20265 Davidia involucrata HOM05D001376 ORTHO05D003384 1.9e-14 82.8 65 64.6
TWI56G0636 Tripterygium wilfordii HOM05D001376 ORTHO05D003384 3.2e-14 82.0 67 64.2
TWI56G0755 Tripterygium wilfordii HOM05D001376 ORTHO05D003384 3.2e-14 82.0 67 64.2
Glyma.19G246200 Glycine max HOM05D001376 ORTHO05D003384 7.2e-14 80.9 94 51.1
Phvul.006G103100 Phaseolus vulgaris HOM05D001376 ORTHO05D003384 7.2e-14 80.9 71 66.2
Sed0013004 Sechium edule HOM05D001376 ORTHO05D003384 7.2e-14 80.9 66 63.6
MSTRG.20466 Avicennia marina HOM05D001376 ORTHO05D003384 9.4e-14 80.5 65 63.1
TWI12G1146 Tripterygium wilfordii HOM05D001376 ORTHO05D003384 1.2e-13 80.1 68 61.8
Psat3g187920 Pisum sativum HOM05D001376 ORTHO05D003384 1.6e-13 79.7 68 67.6
TAR365G0955 Trochodendron aralioides HOM05D001376 ORTHO05D003384 1.6e-13 79.7 94 46.8
Ciclev10028209m.g Citrus clementina HOM05D001376 ORTHO05D003384 2.7e-13 79.0 65 63.1
Medtr7g115340 Medicago truncatula HOM05D001376 ORTHO05D003384 3.6e-13 78.6 65 64.6
PGR004G0191 Punica granatum HOM05D001376 ORTHO05D003384 7.9e-13 77.4 71 64.8
Dinv05260 Davidia involucrata HOM05D001376 ORTHO05D003384 3.0e-12 75.5 69 60.9
Lj1g0011630 Lotus japonicus HOM05D001376 ORTHO05D003384 3.0e-12 75.5 69 60.9
TPR.G6986 Trifolium pratense HOM05D001376 ORTHO05D003384 3.0e-12 75.5 72 59.7
TAR636G3435 Trochodendron aralioides HOM05D001376 ORTHO05D003384 3.0e-12 75.5 66 60.6
Duzib106G1306 Durio zibethinus HOM05D001376 ORTHO05D003384 3.9e-12 75.1 69 62.3
Nn1g02622 Nelumbo nucifera HOM05D001376 ORTHO05D003384 2.0e-11 72.8 67 61.2
Sabra13G0039500 Salix brachista HOM05D001376 ORTHO05D003384 2.5e-11 72.4 59 66.1
VMungo0540G0510 Vigna mungo HOM05D001376 ORTHO05D003384 2.5e-11 72.4 74 59.5
Oeu016453.1 Olea europaea HOM05D001376 ORTHO05D003384 5.7e-11 71.2 65 58.5
Oeu038470.1 Olea europaea HOM05D001376 ORTHO05D003384 7.4e-11 70.9 60 63.3
Gohir.D11G260500 Gossypium hirsutum HOM05D001376 ORTHO05D003384 1.7e-10 69.7 65 60.0
Gorai.007G278800 Gossypium raimondii HOM05D001376 ORTHO05D003384 1.7e-10 69.7 65 60.0
Oeu014620.1 Olea europaea HOM05D001376 ORTHO05D003384 1.7e-10 69.7 65 61.5
Aqoxy5G00313 Aquilegia oxysepala HOM05D001376 ORTHO05D003384 2.2e-10 69.3 65 58.5
Solyc01g097010.3 Solanum lycopersicum HOM05D001376 ORTHO05D003384 3.7e-10 68.6 66 59.1
Sopen01g040710 Solanum pennellii HOM05D001376 ORTHO05D003384 3.7e-10 68.6 66 59.1
Oeu002668.1 Olea europaea HOM05D001376 ORTHO05D003384 4.8e-10 68.2 65 58.5
Sed0017614 Sechium edule HOM05D001376 ORTHO05D003384 4.8e-10 68.2 67 58.2
Gohir.A11G250000 Gossypium hirsutum HOM05D001376 ORTHO05D003384 6.3e-10 67.8 65 58.5
Nitab4.5_0002247g0170 Nicotiana tabacum HOM05D001376 ORTHO05D003384 6.3e-10 67.8 66 59.1
Nitab4.5_0006420g0020 Nicotiana tabacum HOM05D001376 ORTHO05D003384 6.3e-10 67.8 66 59.1
vmacro13821 Vaccinium macrocarpon HOM05D001376 ORTHO05D003384 1.8e-09 66.2 72 59.7
arahy.Tifrunner.gnm1.ann1.PDDC3X Arachis hypogaea HOM05D001376 ORTHO05D003384 2.4e-09 65.9 68 54.4
Migut.B01120 Erythranthe guttata HOM05D001376 ORTHO05D003384 3.1e-09 65.5 74 52.7
Lj5g0021928 Lotus japonicus HOM05D001376 ORTHO05D003384 3.1e-09 65.5 68 54.4
Dinv34585 Davidia involucrata HOM05D001376 ORTHO05D003384 5.3e-09 64.7 65 52.3
SGA_v2.0_scaffold172G38977 Striga asiatica HOM05D001376 ORTHO05D003384 5.3e-09 64.7 65 55.4
Eucgr.H04314 Eucalyptus grandis HOM05D001376 ORTHO05D003384 9.1e-09 63.9 67 56.7
Eucgr.L01440 Eucalyptus grandis HOM05D001376 ORTHO05D003384 9.1e-09 63.9 67 56.7
MD04G1227000 Malus domestica HOM05D001376 ORTHO05D003384 9.1e-09 63.9 59 57.6
CAN.G134.62 Capsicum annuum HOM05D001376 ORTHO05D003384 1.2e-08 63.5 66 56.1
CsaV3_2G003940 Cucumis sativus L. HOM05D001376 ORTHO05D003384 1.5e-08 63.2 43 69.8
Dinv22460 Davidia involucrata HOM05D001376 ORTHO05D003384 2.0e-08 62.8 68 55.9
TWI12G0820 Tripterygium wilfordii HOM05D001376 ORTHO05D003384 2.0e-08 62.8 68 51.5
ClCG02G016820 Citrullus lanatus HOM05D001376 ORTHO05D003384 3.4e-08 62.0 61 59.0
Haze_24554 Corylus avellana HOM05D001376 ORTHO05D003384 3.4e-08 62.0 67 49.3
Thhalv10020380m.g Eutrema salsugineum HOM05D001376 ORTHO05D003384 4.5e-08 61.6 62 58.1
Nn3g19546 Nelumbo nucifera HOM05D001376 ORTHO05D003384 4.5e-08 61.6 65 50.8
EL10Ac4g09077 Beta vulgaris HOM05D001376 ORTHO05D003384 5.9e-08 61.2 70 54.3
Lalb_Chr02g0142361 Lupinus albus HOM05D001376 ORTHO05D003384 5.9e-08 61.2 67 52.2
Lalb_Chr06g0162581 Lupinus albus HOM05D001376 ORTHO05D003384 7.7e-08 60.8 70 52.9
PSO017G3492 Papaver somniferum HOM05D001376 ORTHO05D003384 7.7e-08 60.8 66 51.5
PSO063G1102 Papaver somniferum HOM05D001376 ORTHO05D003384 7.7e-08 60.8 66 51.5
Phvul.007G178400 Phaseolus vulgaris HOM05D001376 ORTHO05D003384 7.7e-08 60.8 68 51.5
SalBow4G1861 Salvia bowleyana HOM05D001376 ORTHO05D003384 7.7e-08 60.8 65 55.4
AL3G14650 Arabidopsis lyrata HOM05D001376 ORTHO05D003384 1.3e-07 60.1 62 56.5
AT3G04610 Arabidopsis thaliana HOM05D001376 ORTHO05D003384 1.3e-07 60.1 62 56.5
CARHR078820 Cardamine hirsuta HOM05D001376 ORTHO05D003384 1.3e-07 60.1 62 56.5
Rhsim01G0268000 Rhododendron simsii HOM05D001376 ORTHO05D003384 1.3e-07 60.1 68 52.9
MBI13_g33146_MAGBIO Magnolia biondii HOM05D001376 ORTHO05D003384 1.7e-07 59.7 61 59.0
Carub.0003s0377 Capsella rubella HOM05D001376 ORTHO05D003384 2.2e-07 59.3 62 56.5
Sp3g03460 Schrenkiella parvula HOM05D001376 ORTHO05D003384 2.2e-07 59.3 64 54.7
CDE07G1796 Ceratophyllum demersum HOM05D001376 ORTHO05D003384 3.8e-07 58.5 63 49.2
Hma1.2p1_1029F.1_g249740 Hydrangea macrophylla HOM05D001376 ORTHO05D003384 3.8e-07 58.5 65 49.2
VMungo0720G0055 Vigna mungo HOM05D001376 ORTHO05D003384 3.8e-07 58.5 68 50.0
Gohir.A08G216200 Gossypium hirsutum HOM05D001376 ORTHO05D003384 6.5e-07 57.8 66 54.5
Gohir.D08G233200 Gossypium hirsutum HOM05D001376 ORTHO05D003384 6.5e-07 57.8 66 54.5
Gorai.004G247700 Gossypium raimondii HOM05D001376 ORTHO05D003384 6.5e-07 57.8 66 54.5
TPR.G9048 Trifolium pratense HOM05D001376 ORTHO05D003384 8.5e-07 57.4 69 49.3
Psat6g056360 Pisum sativum HOM05D001376 ORTHO05D003384 1.1e-06 57.0 69 47.8
arahy.Tifrunner.gnm1.ann1.YYH81C Arachis hypogaea HOM05D001376 ORTHO05D003384 1.4e-06 56.6 100 34.0
COL.COLO4_03736 Corchorus olitorius HOM05D001376 ORTHO05D003384 1.4e-06 56.6 60 53.3
COL.COLO4_03739 Corchorus olitorius HOM05D001376 ORTHO05D003384 1.4e-06 56.6 60 53.3
Cc02_g31020 Coffea canephora HOM05D001376 ORTHO05D003384 1.9e-06 56.2 59 55.9
Ca_09702_v3 Cicer arietinum L. HOM05D001376 ORTHO05D003384 2.5e-06 55.8 71 46.5
BcaC01g04361 Brassica carinata HOM05D001376 ORTHO05D003384 3.2e-06 55.5 63 55.6
A03p33720 Brassica napus HOM05D001376 ORTHO05D003384 3.2e-06 55.5 63 55.6
C03p41020 Brassica napus HOM05D001376 ORTHO05D003384 3.2e-06 55.5 63 55.6
BraA03t12546Z Brassica rapa HOM05D001376 ORTHO05D003384 3.2e-06 55.5 63 55.6
BcaB04g19312 Brassica carinata HOM05D001376 ORTHO05D003384 4.2e-06 55.1 63 55.6
arahy.Tifrunner.gnm1.ann1.E4TWYF Arachis hypogaea HOM05D001376 ORTHO05D003384 5.5e-06 54.7 60 51.7
arahy.Tifrunner.gnm1.ann1.PE2E54 Arachis hypogaea HOM05D001376 ORTHO05D003384 5.5e-06 54.7 65 43.1
Lalb_Chr18g0043971 Lupinus albus HOM05D001376 ORTHO05D003384 5.5e-06 54.7 45 60.0
HPP92_018509 Vanilla planifolia HOM05D001376 ORTHO05D003384 9.4e-06 53.9 69 46.4


User provided reference genes

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