Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0450311 Rosa chinensis HOM05D000028 ORTHO05D004513 2.2e-61 238.8 121 100.0
RcHm_v2.0_Chr7g0203481 Rosa chinensis HOM05D000028 ORTHO05D004513 1.0e-34 150.2 83 91.6
RcHm_v2.0_Chr6g0263851 Rosa chinensis HOM05D000028 ORTHO05D004513 6.6e-34 147.5 82 91.5
FAN08G3472 Fragaria x ananassa HOM05D000028 ORTHO05D004513 2.5e-33 145.6 83 86.7
FAN13G1332 Fragaria x ananassa HOM05D000028 ORTHO05D004513 2.5e-33 145.6 83 86.7
FvH4_5g19040 Fragaria vesca HOM05D000028 ORTHO05D004513 9.5e-33 143.7 83 86.7
FAN04G0811 Fragaria x ananassa HOM05D000028 ORTHO05D004513 1.2e-32 143.3 83 85.5
FAN18G3739 Fragaria x ananassa HOM05D000028 ORTHO05D004513 1.2e-32 143.3 83 85.5
MD04G1063300 Malus domestica HOM05D000028 ORTHO05D004513 1.5e-30 136.3 82 81.7
Prupe.5G068400 Prunus persica HOM05D000028 ORTHO05D004513 1.5e-30 136.3 83 78.3
Hma1.2p1_0316F.1_g123120 Hydrangea macrophylla HOM05D000028 ORTHO05D004513 1.2e-27 126.7 83 72.3
Dinv39151 Davidia involucrata HOM05D000028 ORTHO05D004513 2.0e-27 125.9 83 69.9
Thecc.03G250500 Theobroma cacao HOM05D000028 ORTHO05D004513 1.3e-26 123.2 83 69.9
CSS0043657 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D004513 1.7e-26 122.9 83 71.1
Cpa.g.sc29.164 Carica papaya HOM05D000028 ORTHO05D004513 3.9e-26 121.7 83 63.9
Cfa012724 Carpinus fangiana HOM05D000028 ORTHO05D004513 3.9e-26 121.7 83 71.1
Duzib205G1008 Durio zibethinus HOM05D000028 ORTHO05D004513 5.0e-26 121.3 83 71.1
Lalb_Chr09g0330081 Lupinus albus HOM05D000028 ORTHO05D004513 1.1e-25 120.2 82 65.9
CiPaw.12G051900 Carya illinoinensis HOM05D000028 ORTHO05D004513 2.5e-25 119.0 81 69.1
Atru.chr9.1306 Acer truncatum HOM05D000028 ORTHO05D004513 4.3e-25 118.2 83 66.3
CiPaw.11G079600 Carya illinoinensis HOM05D000028 ORTHO05D004513 4.3e-25 118.2 83 67.5
Lalb_Chr09g0324361 Lupinus albus HOM05D000028 ORTHO05D004513 9.5e-25 117.1 82 63.4
QL12p012033 Quercus lobata HOM05D000028 ORTHO05D004513 9.5e-25 117.1 83 65.1
Actinidia27468 Actinidia chinensis HOM05D001088 ORTHO05D004513 1.6e-24 116.3 83 65.1
CiPaw.11G079700 Carya illinoinensis HOM05D000028 ORTHO05D004513 1.6e-24 116.3 83 66.3
Lalb_Chr05g0214441 Lupinus albus HOM05D000028 ORTHO05D004513 2.1e-24 115.9 82 63.4
TAR375G0728 Trochodendron aralioides HOM05D000028 ORTHO05D004513 3.6e-24 115.2 81 64.2
Glyma.05G059900 Glycine max HOM05D000028 ORTHO05D004513 4.7e-24 114.8 82 59.8
GSVIVG01004710001 Vitis vinifera HOM05D000028 ORTHO05D004513 4.7e-24 114.8 76 67.1
Sed0006331 Sechium edule HOM05D000028 ORTHO05D004513 6.2e-24 114.4 83 62.7
Gohir.A08G170000 Gossypium hirsutum HOM05D000028 ORTHO05D004513 8.0e-24 114.0 83 65.1
Ca_21970_v3 Cicer arietinum L. HOM05D000028 ORTHO05D004513 1.4e-23 113.2 77 64.9
CsaV3_3G002650 Cucumis sativus L. HOM05D000028 ORTHO05D004513 1.4e-23 113.2 84 63.1
Gohir.D08G188300 Gossypium hirsutum HOM05D000028 ORTHO05D004513 1.4e-23 113.2 83 65.1
Gorai.004G198200 Gossypium raimondii HOM05D000028 ORTHO05D004513 1.4e-23 113.2 83 65.1
Lalb_Chr05g0221231 Lupinus albus HOM05D000028 ORTHO05D004513 1.4e-23 113.2 82 61.0
MELO3C013934.2 Cucumis melo HOM05D000028 ORTHO05D004513 1.8e-23 112.8 84 60.7
Gohir.D12G219300 Gossypium hirsutum HOM05D000028 ORTHO05D004513 3.1e-23 112.1 81 66.7
Gorai.008G235000 Gossypium raimondii HOM05D000028 ORTHO05D004513 3.1e-23 112.1 81 66.7
Sabra01G0133900 Salix brachista HOM05D000028 ORTHO05D004513 3.1e-23 112.1 83 63.9
SHI20291 Sapria himalayana HOM05D000028 ORTHO05D004513 3.1e-23 112.1 83 63.9
VMungo0251G0279 Vigna mungo HOM05D000028 ORTHO05D004513 3.1e-23 112.1 89 58.4
Gohir.A12G216800 Gossypium hirsutum HOM05D000028 ORTHO05D004513 4.0e-23 111.7 81 66.7
Rhsim07G0108600 Rhododendron simsii HOM05D000028 ORTHO05D004513 4.0e-23 111.7 81 61.7
TAR629G1782 Trochodendron aralioides HOM05D000028 ORTHO05D004513 5.2e-23 111.3 81 59.3
PGR042G2737 Punica granatum HOM05D000028 ORTHO05D004513 6.8e-23 110.9 83 60.2
Glyma.01G209000 Glycine max HOM05D000028 ORTHO05D004513 8.9e-23 110.5 82 58.5
Medtr4g100840 Medicago truncatula HOM05D000028 ORTHO05D004513 4.4e-22 108.2 77 61.0
CANSAT21G2529 Cannabis sativa HOM05D000028 ORTHO05D004513 5.8e-22 107.8 83 60.2
TPR.G37702 Trifolium pratense HOM05D000028 ORTHO05D004513 7.5e-22 107.5 77 62.3
Lalb_Chr16g0386721 Lupinus albus HOM05D000028 ORTHO05D004513 9.8e-22 107.1 81 59.3
Sc01g0008420 Simmondsia chinensis HOM05D000028 ORTHO05D004513 1.3e-21 106.7 81 60.5
Haze_07906 Corylus avellana HOM05D000028 ORTHO05D004513 1.7e-21 106.3 84 65.5
Aqoxy7G00773 Aquilegia oxysepala HOM05D000028 ORTHO05D004513 2.2e-21 105.9 81 65.4
Potri.001G157600 Populus trichocarpa HOM05D000028 ORTHO05D004513 2.2e-21 105.9 83 61.4
Manes.01G081100 Manihot esculenta HOM05D000028 ORTHO05D004513 2.9e-21 105.5 83 63.9
Hund11597 Selenicereus undatus HOM05D000028 ORTHO05D004513 2.9e-21 105.5 83 59.0
Sc22g0000920 Simmondsia chinensis HOM05D000028 ORTHO05D004513 2.9e-21 105.5 82 62.2
Manes.02G040000 Manihot esculenta HOM05D000028 ORTHO05D004513 3.7e-21 105.1 83 62.7
TWI60G1727 Tripterygium wilfordii HOM05D000028 ORTHO05D004513 4.9e-21 104.8 83 62.7
TWI81G0421 Tripterygium wilfordii HOM05D000028 ORTHO05D004513 4.9e-21 104.8 83 62.7
vmacro14081 Vaccinium macrocarpon HOM05D000028 ORTHO05D004513 4.9e-21 104.8 83 56.6
Ca_24580_v3 Cicer arietinum L. HOM05D000502 ORTHO05D004513 6.4e-21 104.4 82 59.8
Cc08_g12360 Coffea canephora HOM05D000028 ORTHO05D004513 6.4e-21 104.4 83 60.2
Lj2A218T56 Lonicera japonica HOM05D000028 ORTHO05D004513 1.1e-20 103.6 83 62.7
PGR031G0216 Punica granatum HOM05D000028 ORTHO05D004513 1.1e-20 103.6 83 61.4
arahy.Tifrunner.gnm1.ann1.84X0BD Arachis hypogaea HOM05D000028 ORTHO05D004513 1.4e-20 103.2 84 58.3
Medtr5g012650 Medicago truncatula HOM05D000028 ORTHO05D004513 2.4e-20 102.4 82 59.8
VMungo1215G0861 Vigna mungo HOM05D000028 ORTHO05D004513 2.4e-20 102.4 82 54.9
Sabra03G0047700 Salix brachista HOM05D000502 ORTHO05D004513 3.2e-20 102.1 78 60.3
Sed0020968 Sechium edule HOM05D000028 ORTHO05D004513 3.2e-20 102.1 83 59.0
CsaV3_5G004250 Cucumis sativus L. HOM05D000028 ORTHO05D004513 4.1e-20 101.7 83 60.2
Lj2g0018491 Lotus japonicus HOM05D000028 ORTHO05D004513 5.4e-20 101.3 82 54.9
Nitab4.5_0006258g0020 Nicotiana tabacum HOM05D000174 ORTHO05D004513 5.4e-20 101.3 81 61.7
arahy.Tifrunner.gnm1.ann1.NR8AVU Arachis hypogaea HOM05D000028 ORTHO05D004513 9.2e-20 100.5 82 52.4
MELO3C005529.2 Cucumis melo HOM05D000028 ORTHO05D004513 9.2e-20 100.5 82 58.5
Peaxi162Scf00174g00314 Petunia axillaris HOM05D000174 ORTHO05D004513 9.2e-20 100.5 81 61.7
Dinv21643 Davidia involucrata HOM05D000174 ORTHO05D004513 1.6e-19 99.8 83 61.4
Nn6g33952 Nelumbo nucifera HOM05D000028 ORTHO05D004513 1.6e-19 99.8 81 58.0
Glyma.11G033200 Glycine max HOM05D000028 ORTHO05D004513 2.7e-19 99.0 82 56.1
TPR.G25885 Trifolium pratense HOM05D000028 ORTHO05D004513 2.7e-19 99.0 82 57.3
CARHR173890 Cardamine hirsuta HOM05D000028 ORTHO05D004513 3.5e-19 98.6 85 61.2
Eucgr.E00422 Eucalyptus grandis HOM05D000028 ORTHO05D004513 3.5e-19 98.6 82 58.5
Nitab4.5_0002225g0020 Nicotiana tabacum HOM05D000028 ORTHO05D004513 3.5e-19 98.6 81 61.7
Gohir.D09G191000 Gossypium hirsutum HOM05D000028 ORTHO05D004513 4.6e-19 98.2 83 59.0
BcaC03g16964 Brassica carinata HOM05D000028 ORTHO05D004513 6.0e-19 97.8 85 62.4
Nitab4.5_0022887g0010 Nicotiana tabacum HOM05D000028 ORTHO05D004513 6.0e-19 97.8 81 61.7
Potri.003G077300 Populus trichocarpa HOM05D000028 ORTHO05D004513 6.0e-19 97.8 78 57.7
Solyc08g078580.3 Solanum lycopersicum HOM05D000028 ORTHO05D004513 6.0e-19 97.8 83 57.8
Sopen08g027060 Solanum pennellii HOM05D000028 ORTHO05D004513 6.0e-19 97.8 83 57.8
Psat2g177920 Pisum sativum HOM05D000028 ORTHO05D004513 7.8e-19 97.4 82 54.9
Gorai.006G213800 Gossypium raimondii HOM05D000028 ORTHO05D004513 1.7e-18 96.3 83 57.8
Phvul.002G058200 Phaseolus vulgaris HOM05D000028 ORTHO05D004513 1.7e-18 96.3 82 53.7
THA.LOC104806724 Tarenaya hassleriana HOM05D000028 ORTHO05D004513 3.9e-18 95.1 80 56.2
ClCG01G004080 Citrullus lanatus HOM05D000028 ORTHO05D004513 5.0e-18 94.7 83 53.0
C02p48700 Brassica napus HOM05D000028 ORTHO05D004513 6.6e-18 94.4 85 60.0
Carub.0008s0030 Capsella rubella HOM05D000028 ORTHO05D004513 6.6e-18 94.4 84 57.1
MD06G1057600 Malus domestica HOM05D000028 ORTHO05D004513 6.6e-18 94.4 83 60.2
Oeu029719.1 Olea europaea HOM05D000028 ORTHO05D004513 6.6e-18 94.4 80 51.2
BcaC06g31381 Brassica carinata HOM05D000028 ORTHO05D004513 1.5e-17 93.2 85 58.8
CAN.G1058.36 Capsicum annuum HOM05D000028 ORTHO05D004513 1.5e-17 93.2 81 53.1
Thhalv10000951m.g Eutrema salsugineum HOM05D000028 ORTHO05D004513 1.5e-17 93.2 84 57.1
A02p31360 Brassica napus HOM05D000028 ORTHO05D004513 1.9e-17 92.8 85 58.8
BraA02t08138Z Brassica rapa HOM05D000028 ORTHO05D004513 1.9e-17 92.8 85 58.8
Sp2g12190 Schrenkiella parvula HOM05D000028 ORTHO05D004513 2.5e-17 92.4 84 58.3
AL8G10510 Arabidopsis lyrata HOM05D000028 ORTHO05D004513 3.3e-17 92.0 84 56.0
C07p31130 Brassica napus HOM05D000028 ORTHO05D004513 3.3e-17 92.0 84 58.3
BcaC06g31379 Brassica carinata HOM05D000028 ORTHO05D004513 4.3e-17 91.7 85 58.8
BcaC06g34249 Brassica carinata HOM05D000028 ORTHO05D004513 4.3e-17 91.7 85 58.8
A06p45050 Brassica napus HOM05D000028 ORTHO05D004513 4.3e-17 91.7 85 58.8
BolC7t43654H Brassica oleracea HOM05D000028 ORTHO05D004513 4.3e-17 91.7 85 58.8
BraA06t27375Z Brassica rapa HOM05D000028 ORTHO05D004513 4.3e-17 91.7 85 58.8
AT5G47470 Arabidopsis thaliana HOM05D000028 ORTHO05D004513 1.2e-16 90.1 84 53.6
arahy.Tifrunner.gnm1.ann1.FM55WC Arachis hypogaea HOM05D000028 ORTHO05D004513 1.6e-16 89.7 91 46.2
PSO170G5461 Papaver somniferum HOM05D000028 ORTHO05D004513 1.6e-16 89.7 81 49.4
PSO017G3248 Papaver somniferum HOM05D000028 ORTHO05D004513 3.6e-16 88.6 81 48.1
Aa31csc22G130 Aethionema arabicum HOM05D000028 ORTHO05D004513 4.7e-16 88.2 63 61.9
Eucgr.D02085 Eucalyptus grandis HOM05D000028 ORTHO05D004513 6.2e-16 87.8 80 50.0
Aqoxy7G00771 Aquilegia oxysepala HOM05D000028 ORTHO05D004513 2.3e-15 85.9 78 53.8
SGA_v2.0_scaffold120G32888 Striga asiatica HOM05D000028 ORTHO05D004513 2.3e-15 85.9 81 46.9
ClCG10G002620 Citrullus lanatus HOM05D000028 ORTHO05D004513 3.1e-15 85.5 50 74.0
Phvul.003G221100 Phaseolus vulgaris HOM05D000028 ORTHO05D004513 3.1e-15 85.5 89 49.4
ATR0317G047 Amborella trichopoda HOM05D000028 ORTHO05D004513 4.0e-15 85.1 82 46.3
Eucgr.D02084 Eucalyptus grandis HOM05D000028 ORTHO05D004513 8.9e-15 84.0 80 51.2
Eucgr.D02086 Eucalyptus grandis HOM05D000028 ORTHO05D004513 8.9e-15 84.0 80 47.5
Lsat_1_v5_gn_6_90880 Lactuca sativa HOM05D000028 ORTHO05D004513 2.6e-14 82.4 85 49.4
COL.COLO4_37169 Corchorus olitorius HOM05D000028 ORTHO05D004513 5.8e-14 81.3 58 70.7
DCAR_004955 Daucus carota HOM05D000028 ORTHO05D004513 3.7e-13 78.6 85 49.4
SalBow6G6767 Salvia bowleyana HOM05D000028 ORTHO05D004513 6.4e-13 77.8 83 45.8
THA.LOC104814706 Tarenaya hassleriana HOM05D000028 ORTHO05D004513 1.1e-12 77.0 80 51.2
arahy.Tifrunner.gnm1.ann1.7W2QL6 Arachis hypogaea HOM05D000028 ORTHO05D004513 1.2e-11 73.6 59 57.6
PGSC0003DMG400004816 Solanum tuberosum HOM05D000028 ORTHO05D004513 2.7e-11 72.4 81 48.1
Nitab4.5_0004856g0050 Nicotiana tabacum HOM05D000174 ORTHO05D004513 6.0e-11 71.2 50 64.0
CDE11G0970 Ceratophyllum demersum HOM05D000028 ORTHO05D004513 1.3e-10 70.1 81 42.0
HPP92_015117 Vanilla planifolia HOM05D000028 ORTHO05D004513 6.6e-10 67.8 83 39.8
Aa31LG2G12760 Aethionema arabicum HOM05D000028 ORTHO05D004513 1.5e-09 66.6 93 43.0
BcaC07g38001 Brassica carinata HOM05D000028 ORTHO05D004513 3.3e-09 65.5 83 36.1
BolC8t48383H Brassica oleracea HOM05D000028 ORTHO05D004513 3.3e-09 65.5 83 36.1
CARHR223120 Cardamine hirsuta HOM05D000028 ORTHO05D004513 3.3e-09 65.5 81 42.0
Sp7g15240 Schrenkiella parvula HOM05D000028 ORTHO05D004513 4.3e-09 65.1 81 40.7
AT4G16620 Arabidopsis thaliana HOM05D000028 ORTHO05D004513 5.6e-09 64.7 81 40.7
BraA08t33250Z Brassica rapa HOM05D000028 ORTHO05D004513 7.3e-09 64.3 83 37.3
A08p12600 Brassica napus HOM05D000028 ORTHO05D004513 9.5e-09 63.9 83 37.3
AL7G38130 Arabidopsis lyrata HOM05D000028 ORTHO05D004513 1.2e-08 63.5 81 39.5
Carub.0007s2478 Capsella rubella HOM05D000028 ORTHO05D004513 1.2e-08 63.5 63 44.4
Thhalv10025550m.g Eutrema salsugineum HOM05D000028 ORTHO05D004513 1.6e-08 63.2 57 49.1
Os11g0588100 Oryza sativa ssp. japonica HOM05D000028 ORTHO05D004513 1.6e-08 63.2 84 40.5
Zm00001eb207630 Zea mays HOM05D000028 ORTHO05D004513 2.1e-08 62.8 86 33.7
Os06g0105700 Oryza sativa ssp. japonica HOM05D000028 ORTHO05D004513 3.6e-08 62.0 80 37.5
A03p50040 Brassica napus HOM05D000028 ORTHO05D004513 4.7e-08 61.6 81 38.3
BraA03t14097Z Brassica rapa HOM05D000028 ORTHO05D004513 4.7e-08 61.6 81 38.3
HPP92_002604 Vanilla planifolia HOM05D000028 ORTHO05D004513 6.2e-08 61.2 81 37.0
HPP92_002729 Vanilla planifolia HOM05D000028 ORTHO05D004513 6.2e-08 61.2 81 37.0
Sed0010304 Sechium edule HOM05D000028 ORTHO05D004513 1.1e-07 60.5 53 50.9
BcaB01g03496 Brassica carinata HOM05D000171 ORTHO05D000101 1.4e-07 60.1 83 34.9
BcaC06g33501 Brassica carinata HOM05D000028 ORTHO05D004513 1.8e-07 59.7 81 37.0
C07p48100 Brassica napus HOM05D000028 ORTHO05D004513 1.8e-07 59.7 81 37.0
BolC7t45332H Brassica oleracea HOM05D000028 ORTHO05D004513 1.8e-07 59.7 81 37.0
Zm00001eb379310 Zea mays HOM05D000028 ORTHO05D004513 1.8e-07 59.7 84 33.3
BcaNung02858 Brassica carinata HOM05D000028 ORTHO05D004513 3.1e-07 58.9 81 38.3
Os07g0485500 Oryza sativa ssp. japonica HOM05D000028 ORTHO05D004513 5.2e-07 58.2 65 41.5
Aa31LG2G12770 Aethionema arabicum HOM05D000028 ORTHO05D004513 7.6e-06 54.3 84 35.7


User provided reference genes

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