Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 8.9e-211 736.9 424 100.0
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.8e-177 625.2 429 83.7
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.0e-174 615.5 429 82.3
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.0e-174 615.5 429 82.3
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.5e-173 612.5 429 82.1
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 7.6e-162 574.3 425 83.3
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 7.6e-162 574.3 425 83.3
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 9.9e-162 573.9 425 83.1
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 7.6e-154 547.7 439 70.4
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 1.4e-139 500.4 439 65.8
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 4.2e-136 488.8 425 64.9
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 3.6e-135 485.7 424 64.9
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 1.4e-134 483.8 426 64.3
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 1.1e-133 480.7 426 63.8
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 9.7e-133 477.6 428 63.6
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 6.3e-132 474.9 429 63.2
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 1.8e-131 473.4 426 62.7
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 1.8e-131 473.4 430 64.0
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 5.3e-131 471.9 426 62.9
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 9.1e-131 471.1 430 63.0
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 2.6e-130 469.5 424 65.6
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 4.5e-130 468.8 426 61.7
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 5.9e-130 468.4 430 63.5
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 1.3e-129 467.2 426 61.7
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 2.2e-129 466.5 429 62.7
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 5.5e-128 461.8 424 60.8
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 3.0e-126 456.1 441 61.0
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 3.0e-126 456.1 431 61.0
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 3.9e-126 455.7 426 61.3
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 3.9e-126 455.7 381 64.6
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 5.2e-126 455.3 436 60.3
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 6.7e-126 454.9 428 60.3
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 1.1e-125 454.1 425 60.0
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 1.1e-125 454.1 427 60.4
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 1.5e-125 453.8 427 60.0
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 1.5e-125 453.8 425 63.3
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 4.4e-125 452.2 425 62.1
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 7.4e-125 451.4 430 61.2
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 2.8e-124 449.5 427 59.5
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 1.8e-123 446.8 428 60.0
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 2.4e-123 446.4 424 62.3
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 2.4e-123 446.4 371 64.7
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 4.1e-123 445.7 426 59.9
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 4.1e-123 445.7 429 60.4
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 5.3e-123 445.3 342 69.9
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 2.0e-122 443.4 433 59.4
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 5.9e-122 441.8 431 60.1
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 1.3e-121 440.7 426 59.6
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 3.8e-121 439.1 434 58.3
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 5.0e-121 438.7 433 58.9
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 8.5e-121 438.0 539 51.0
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 2.5e-120 436.4 426 58.9
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 7.2e-120 434.9 430 58.1
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 1.6e-119 433.7 427 58.8
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 1.0e-118 431.0 441 56.2
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 4.0e-118 429.1 433 57.5
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 5.2e-118 428.7 443 57.1
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 6.7e-118 428.3 429 60.8
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 2.0e-117 426.8 431 57.3
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 1.3e-116 424.1 432 60.6
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 1.3e-116 424.1 436 58.9
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 1.3e-116 424.1 437 63.2
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 1.7e-116 423.7 433 60.5
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 2.2e-116 423.3 431 57.1
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 2.8e-116 422.9 439 59.7
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 3.7e-116 422.5 433 57.0
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 1.4e-115 420.6 430 58.1
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 1.8e-115 420.2 429 57.8
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 3.1e-115 419.5 425 57.2
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 5.3e-115 418.7 438 56.8
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 7.0e-115 418.3 428 57.5
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 3.5e-114 416.0 426 56.3
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 4.5e-114 415.6 441 61.5
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 5.9e-114 415.2 431 58.5
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 1.7e-113 413.7 430 59.8
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 1.7e-113 413.7 436 58.7
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 1.5e-112 410.6 435 55.4
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 4.2e-112 409.1 455 54.1
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 4.2e-112 409.1 429 55.2
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 5.5e-112 408.7 429 54.5
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 1.6e-111 407.1 429 56.4
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 4.7e-111 405.6 374 60.4
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 4.7e-111 405.6 337 64.1
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 1.0e-110 404.4 427 56.2
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 1.8e-110 403.7 429 56.6
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 8.8e-110 401.4 434 58.1
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 3.4e-109 399.4 427 54.8
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 7.5e-109 398.3 429 54.3
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 7.5e-109 398.3 429 54.3
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 2.2e-108 396.7 427 54.1
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 3.1e-107 392.9 431 58.2
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 4.1e-107 392.5 431 58.2
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 7.0e-107 391.7 427 54.8
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 3.8e-105 386.0 365 59.7
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 4.2e-104 382.5 431 56.8
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 1.8e-102 377.1 269 79.2
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 4.3e-96 355.9 433 52.0
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 1.0e-94 351.3 429 55.5
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 4.1e-91 339.3 353 54.1
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 7.3e-88 328.6 341 51.9
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 1.5e-85 320.9 338 57.4
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 4.4e-85 319.3 327 54.4
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 5.4e-83 312.4 318 56.6
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 4.1e-75 286.2 269 56.5
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 2.8e-71 273.5 431 39.7
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 1.1e-70 271.6 336 50.0
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 2.4e-67 260.4 337 45.1
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 7.1e-67 258.8 433 39.3
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 3.4e-61 240.0 215 59.1
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 3.4e-61 240.0 320 46.9
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 2.0e-53 214.2 350 37.4
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 1.3e-49 201.4 127 81.1
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 9.9e-45 185.3 129 72.9
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 5.1e-41 172.9 213 50.7
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 6.1e-34 149.4 88 79.5
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 1.8e-22 111.3 314 31.5
MD04G1228300 Malus domestica HOM05D006391 ORTHO05D007767 4.7e-18 96.7 159 48.4
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 3.9e-17 93.6 71 64.8
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 2.0e-13 81.3 141 34.0
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 8.5e-12 75.9 66 59.1
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 1.2e-10 72.0 52 65.4
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 2.7e-10 70.9 46 69.6
PRCOL_00004538 Prasinoderma coloniale HOM05D006391 ORTHO05D007767 1.4e-09 68.6 328 25.0
SHI23188 Sapria himalayana HOM05D006391 ORTHO05D007767 3.3e-08 63.9 131 36.6
BolC3t13192H Brassica oleracea HOM05D006391 ORTHO05D007767 2.2e-07 61.2 193 30.6


User provided reference genes

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