Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 3.9e-154 548.1 283 100.0
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.8e-144 515.4 283 91.9
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.0e-142 509.2 282 91.5
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.2e-141 505.8 282 91.1
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.7e-133 479.6 262 92.0
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 1.4e-127 459.9 283 81.3
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 2.0e-126 456.1 283 80.6
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 3.4e-126 455.3 283 80.6
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 2.0e-121 439.5 240 91.7
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.2e-120 436.0 250 88.0
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 8.5e-109 397.5 289 72.3
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 2.5e-108 396.0 286 68.9
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 3.2e-108 395.6 287 70.4
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 4.2e-108 395.2 287 69.7
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 4.7e-107 391.7 285 70.9
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 1.4e-106 390.2 284 69.7
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 3.0e-106 389.0 286 68.9
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 6.7e-106 387.9 283 68.6
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 6.7e-106 387.9 287 68.6
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.2e-105 387.1 284 69.7
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 4.4e-105 385.2 287 69.0
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 7.5e-105 384.4 283 69.3
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 1.3e-104 383.6 289 68.2
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 1.3e-104 383.6 283 69.3
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 3.7e-104 382.1 288 68.1
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 3.7e-104 382.1 288 67.7
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 4.8e-104 381.7 288 67.7
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 6.3e-104 381.3 284 68.3
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 1.4e-103 380.2 288 67.0
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 1.4e-103 380.2 288 67.4
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 3.1e-103 379.0 286 67.8
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 5.3e-103 378.3 286 69.2
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 9.1e-103 377.5 286 68.5
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 7.7e-102 374.4 286 67.5
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 1.7e-101 373.2 287 66.9
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.2e-101 372.9 286 67.1
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.9e-101 372.5 288 66.7
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 5.5e-100 368.2 253 72.7
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 1.6e-99 366.7 287 65.5
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 2.7e-99 365.9 284 65.5
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 3.0e-98 362.5 285 65.6
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 3.0e-98 362.5 270 69.6
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 6.8e-98 361.3 251 72.1
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 1.5e-97 360.1 289 64.4
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 2.6e-97 359.4 288 65.6
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 2.6e-97 359.4 288 67.0
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 3.4e-97 359.0 283 65.7
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 2.8e-96 355.9 288 65.3
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 1.4e-95 353.6 288 66.0
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 3.1e-95 352.4 286 61.5
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 5.4e-95 351.7 281 65.5
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 9.1e-95 350.9 291 63.9
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 1.2e-94 350.5 242 70.7
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 2.7e-94 349.4 296 62.8
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 7.7e-94 347.8 285 64.9
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 7.7e-94 347.8 288 63.5
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 1.3e-93 347.1 288 63.5
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 1.3e-93 347.1 256 68.4
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 1.3e-93 347.1 287 63.4
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 2.3e-93 346.3 289 64.7
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 5.0e-93 345.1 289 64.4
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 5.0e-93 345.1 289 64.4
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 5.0e-93 345.1 289 63.0
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 6.5e-93 344.7 295 64.4
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.5e-92 343.6 266 70.3
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 4.2e-92 342.0 288 64.9
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 4.2e-92 342.0 287 63.4
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 5.5e-92 341.7 287 63.1
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.6e-91 340.1 282 62.1
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 2.8e-91 339.3 285 63.5
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 1.4e-90 337.0 282 63.5
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 1.8e-90 336.7 289 62.3
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 6.8e-90 334.7 254 67.3
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 2.0e-89 333.2 270 64.1
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 2.6e-89 332.8 250 64.4
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 9.8e-89 330.9 271 64.6
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 1.3e-88 330.5 289 62.6
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 2.2e-88 329.7 249 64.7
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 8.3e-88 327.8 256 65.2
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 1.1e-87 327.4 286 59.8
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 4.1e-87 325.5 243 65.8
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 5.4e-87 325.1 278 61.5
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 7.0e-87 324.7 240 67.1
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 9.2e-87 324.3 218 72.0
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 1.6e-86 323.6 243 65.4
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 3.5e-86 322.4 265 62.3
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 5.9e-86 321.6 282 61.7
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 3.8e-85 318.9 276 62.3
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 1.1e-84 317.4 238 67.6
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 6.1e-83 311.6 228 65.4
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 1.0e-82 310.8 310 57.1
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 5.2e-82 308.5 267 59.9
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 4.4e-81 305.4 222 68.0
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 2.9e-80 302.8 294 58.2
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.8e-79 300.1 288 59.4
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 1.8e-79 300.1 282 57.8
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 2.4e-79 299.7 248 61.7
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 1.6e-78 297.0 248 56.5
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 3.6e-75 285.8 222 61.7
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 2.0e-73 280.0 260 60.0
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 2.0e-73 280.0 231 57.1
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.7e-72 276.9 183 72.1
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 6.4e-72 275.0 238 60.5
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 1.2e-67 260.8 274 48.5
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 1.2e-65 254.2 175 69.7
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 1.2e-65 254.2 164 73.8
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 3.2e-63 246.1 334 44.0
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 1.6e-62 243.8 223 54.3
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 3.0e-61 239.6 286 49.0
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 8.1e-59 231.5 245 50.2
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 1.2e-57 227.6 225 51.6
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 1.3e-56 224.2 233 49.4
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 4.3e-52 209.1 238 47.5
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 9.6e-52 208.0 237 54.0
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 2.1e-51 206.8 168 66.1
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.0e-45 188.0 229 48.0
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 1.1e-44 184.5 99 91.9
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.5e-44 184.1 99 90.9
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.5e-44 184.1 99 90.9
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 7.3e-44 181.8 112 78.6
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 7.3e-44 181.8 99 89.9
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.6e-43 179.5 99 88.9
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 5.6e-36 155.6 224 40.2
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.5e-33 147.5 130 60.0
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 2.9e-32 143.3 188 43.6
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 8.4e-32 141.7 109 64.2
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 6.0e-30 135.6 141 53.2
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 2.6e-25 120.2 73 75.3
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 3.4e-25 119.8 90 62.2
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 7.6e-25 118.6 81 66.7
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 6.5e-24 115.5 81 65.4
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 6.0e-22 109.0 82 64.6
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 1.9e-15 87.4 80 60.0
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 2.1e-14 84.0 136 33.8
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 1.5e-12 77.8 127 42.5
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 3.3e-12 76.6 52 71.2
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 1.7e-11 74.3 192 28.1
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 2.2e-11 73.9 103 48.5
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 8.2e-11 72.0 54 70.4
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 8.2e-11 72.0 68 55.9
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 4.1e-10 69.7 60 60.0
FAN14G1862 Fragaria x ananassa HOM05D058902 ORTHO05D006847 6.5e-08 62.4 99 46.5
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 4.7e-06 56.2 107 40.2


User provided reference genes

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