Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0449691 Rosa chinensis HOM05D003598 ORTHO05D004198 2.1e-135 485.7 248 100.0
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.2e-79 300.4 235 70.6
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 3.6e-79 298.9 265 66.0
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.4e-75 286.2 266 62.4
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.6e-74 283.5 265 62.3
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 6.0e-74 281.6 265 62.3
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 5.6e-64 248.4 271 54.2
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 1.6e-58 230.3 273 53.1
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 5.6e-56 221.9 273 51.6
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 7.1e-51 204.9 275 45.5
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 9.3e-51 204.5 258 48.1
Haze_22545 Corylus avellana HOM05D003598 ORTHO05D004198 9.3e-51 204.5 274 45.6
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 4.6e-50 202.2 275 45.5
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 4.6e-50 202.2 275 45.8
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 8.7e-49 198.0 274 44.5
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 1.9e-48 196.8 265 47.2
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 2.5e-48 196.4 271 46.5
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 4.3e-48 195.7 275 44.0
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 9.6e-48 194.5 271 46.1
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 2.1e-47 193.4 273 45.1
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 2.8e-47 193.0 262 45.8
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 2.4e-46 189.9 274 43.8
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 1.2e-45 187.6 258 46.1
Dinv05241 Davidia involucrata HOM05D003598 ORTHO05D004198 2.0e-45 186.8 273 41.8
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 3.4e-45 186.0 265 44.9
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 4.5e-45 185.7 271 43.9
Rhsim04G0081000 Rhododendron simsii HOM05D003598 ORTHO05D004198 5.8e-45 185.3 239 46.9
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 9.9e-45 184.5 274 44.5
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 1.3e-44 184.1 275 44.4
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 1.7e-44 183.7 271 43.2
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 1.7e-44 183.7 275 43.3
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 2.9e-44 183.0 274 43.8
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 8.4e-44 181.4 274 42.0
Eucgr.J00852 Eucalyptus grandis HOM05D003598 ORTHO05D004198 1.1e-43 181.0 275 42.2
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 1.4e-43 180.6 259 42.9
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 2.4e-43 179.9 282 44.0
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 4.2e-43 179.1 271 41.7
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 1.2e-42 177.6 270 40.7
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 2.1e-42 176.8 274 40.9
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 3.5e-42 176.0 274 41.6
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 6.0e-42 175.3 269 40.1
Medtr4g074480 Medicago truncatula HOM05D003598 ORTHO05D004198 6.0e-42 175.3 264 42.4
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 1.0e-41 174.5 264 42.0
Ca_03027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 1.8e-41 173.7 270 41.5
Glyma.11G103000 Glycine max HOM05D003598 ORTHO05D004198 2.3e-41 173.3 264 42.8
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 3.0e-41 172.9 269 41.3
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 3.9e-41 172.6 263 43.0
Psat7g173800 Pisum sativum HOM05D003598 ORTHO05D004198 5.1e-41 172.2 260 41.9
TPR.G32324 Trifolium pratense HOM05D003598 ORTHO05D004198 8.7e-41 171.4 263 43.0
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 1.1e-40 171.0 270 39.6
Lj6A721G58 Lonicera japonica HOM05D003598 ORTHO05D004198 1.1e-40 171.0 178 52.8
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 1.5e-40 170.6 254 39.8
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 1.5e-40 170.6 254 39.8
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 3.3e-40 169.5 275 43.3
Prupe.8G036300 Prunus persica HOM05D003598 ORTHO05D004198 4.3e-40 169.1 183 52.5
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 5.6e-40 168.7 273 41.0
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 1.3e-39 167.5 272 39.0
Lalb_Chr03g0024851 Lupinus albus HOM05D003598 ORTHO05D004198 1.6e-39 167.2 263 41.4
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 2.1e-39 166.8 272 40.1
Glyma.12G141400 Glycine max HOM05D003598 ORTHO05D004198 2.8e-39 166.4 262 41.6
Lj3g0003654 Lotus japonicus HOM05D003598 ORTHO05D004198 4.8e-39 165.6 271 41.0
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 4.8e-39 165.6 272 39.3
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 4.8e-39 165.6 254 39.0
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 6.2e-39 165.2 271 38.7
arahy.Tifrunner.gnm1.ann1.Y4R7AD Arachis hypogaea HOM05D003598 ORTHO05D004198 1.1e-38 164.5 271 39.5
Ca_14027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 1.4e-38 164.1 270 39.6
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 2.4e-38 163.3 277 37.2
arahy.Tifrunner.gnm1.ann1.01A9SY Arachis hypogaea HOM05D003598 ORTHO05D004198 2.4e-38 163.3 271 39.1
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 3.1e-38 162.9 254 41.3
vmacro12412 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 3.1e-38 162.9 181 51.4
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 5.3e-38 162.2 268 40.3
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 9.0e-38 161.4 254 40.9
Sc10g0007060 Simmondsia chinensis HOM05D003598 ORTHO05D004198 1.2e-37 161.0 274 40.9
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 1.5e-37 160.6 271 38.7
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 1.5e-37 160.6 271 38.4
Solyc03g119420.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 1.5e-37 160.6 254 40.2
Oeu045722.3 Olea europaea HOM05D003598 ORTHO05D004198 2.0e-37 160.2 278 41.7
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 2.6e-37 159.8 271 38.4
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 3.4e-37 159.5 273 39.2
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 4.5e-37 159.1 272 39.3
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 4.5e-37 159.1 272 39.3
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 4.5e-37 159.1 272 39.3
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 4.5e-37 159.1 262 39.7
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 5.8e-37 158.7 280 36.1
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 5.8e-37 158.7 268 37.7
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 7.6e-37 158.3 260 42.3
Aqoxy3G01046 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 9.9e-37 157.9 280 38.9
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 9.9e-37 157.9 271 37.3
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 9.9e-37 157.9 255 39.2
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 9.9e-37 157.9 255 39.2
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 9.9e-37 157.9 175 52.6
HanXRQChr03g0086691 Helianthus annuus HOM05D003598 ORTHO05D004198 1.3e-36 157.5 172 50.6
HanXRQChr17g0533671 Helianthus annuus HOM05D003598 ORTHO05D004198 1.7e-36 157.1 169 52.7
Ah.01g001620 Amaranthus hybridus HOM05D003598 ORTHO05D004198 2.2e-36 156.8 213 45.5
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 2.2e-36 156.8 279 38.0
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 2.2e-36 156.8 235 44.7
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 2.9e-36 156.4 254 39.4
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 2.9e-36 156.4 163 55.8
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 3.8e-36 156.0 254 40.2
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 4.9e-36 155.6 173 52.0
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 6.4e-36 155.2 267 40.4
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 8.4e-36 154.8 271 38.0
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 1.1e-35 154.5 268 37.3
Sabra02G0050100 Salix brachista HOM05D003598 ORTHO05D004198 1.4e-35 154.1 275 39.6
Oeu042207.1 Olea europaea HOM05D003598 ORTHO05D004198 1.9e-35 153.7 159 56.0
BraA10t44179Z Brassica rapa HOM05D001989 ORTHO05D004198 3.2e-35 152.9 271 37.6
ClCG10G011850 Citrullus lanatus HOM05D003598 ORTHO05D004198 3.2e-35 152.9 271 38.7
CSS0011637 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D000909 4.2e-35 152.5 257 41.2
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 5.5e-35 152.1 173 49.1
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 5.5e-35 152.1 173 49.1
Zm00001eb066470 Zea mays HOM05D003598 ORTHO05D004198 5.5e-35 152.1 173 50.3
TAR629G0796 Trochodendron aralioides HOM05D003598 ORTHO05D004198 7.1e-35 151.8 169 52.1
AT5G18400 Arabidopsis thaliana HOM05D003598 ORTHO05D004198 9.3e-35 151.4 271 37.6
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.2e-34 151.0 173 48.6
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 1.2e-34 151.0 184 48.9
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 1.6e-34 150.6 279 37.6
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 2.1e-34 150.2 271 38.0
Phvul.L003737 Phaseolus vulgaris HOM05D003598 ORTHO05D004198 2.1e-34 150.2 262 39.7
Zm00001eb066420 Zea mays HOM05D003598 ORTHO05D004198 2.1e-34 150.2 173 49.7
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 3.5e-34 149.4 266 37.2
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 6.0e-34 148.7 168 51.8
VMungo1127G1291 Vigna mungo HOM05D003598 ORTHO05D004198 1.0e-33 147.9 265 39.2
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 1.3e-33 147.5 167 52.7
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 3.9e-33 146.0 184 47.8
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 5.1e-33 145.6 171 49.7
Os04g0674400 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 6.7e-33 145.2 169 48.5
Os04g0682050 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 8.7e-33 144.8 169 48.5
AUR62015205 Chenopodium quinoa HOM05D003598 ORTHO05D004198 1.5e-32 144.1 228 47.4
Duzib138G0618 Durio zibethinus HOM05D003598 ORTHO05D004198 2.5e-32 143.3 173 49.1
Ah.01g012930 Amaranthus hybridus HOM05D003598 ORTHO05D004198 4.3e-32 142.5 213 42.7
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 5.6e-32 142.1 165 50.3
DCAR_030401 Daucus carota HOM05D003598 ORTHO05D004198 9.6e-32 141.4 235 41.7
AUR62000767 Chenopodium quinoa HOM05D003598 ORTHO05D004198 2.8e-31 139.8 176 47.7
AUR62017668 Chenopodium quinoa HOM05D003598 ORTHO05D004198 6.2e-31 138.7 233 46.4
unitig_899.g14735 Utricularia gibba HOM05D003598 ORTHO05D004198 6.2e-31 138.7 156 52.6
Ah.07g198410 Amaranthus hybridus HOM05D003598 ORTHO05D004198 1.8e-30 137.1 89 80.9
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 3.1e-30 136.3 268 36.9
HPP92_009730 Vanilla planifolia HOM05D003598 ORTHO05D004198 6.9e-30 135.2 169 46.7
AUR62005202 Chenopodium quinoa HOM05D003598 ORTHO05D004198 9.0e-30 134.8 176 46.6
Hund03395 Selenicereus undatus HOM05D003598 ORTHO05D004198 9.0e-30 134.8 208 44.2
Sc20g0002190 Simmondsia chinensis HOM05D003598 ORTHO05D004198 1.2e-29 134.4 164 48.8
QL09p042139 Quercus lobata HOM05D003598 ORTHO05D004198 1.5e-29 134.0 154 51.3
SGA_v2.0_scaffold277G46719 Striga asiatica HOM05D003598 ORTHO05D004198 1.5e-29 134.0 88 77.3
EL10Ac9g22923 Beta vulgaris HOM05D003598 ORTHO05D004198 2.6e-29 133.3 171 48.0
Cc00_g23020 Coffea canephora HOM05D003598 ORTHO05D004198 2.6e-29 133.3 166 50.6
Cc00_g17080 Coffea canephora HOM05D003598 ORTHO05D004198 1.7e-28 130.6 137 53.3
CSS0032311 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 2.2e-28 130.2 149 51.0
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 2.9e-28 129.8 274 33.6
Hund19509 Selenicereus undatus HOM05D003598 ORTHO05D004198 6.5e-28 128.6 177 46.3
Nn6g34923 Nelumbo nucifera HOM05D003598 ORTHO05D004198 8.4e-28 128.3 242 37.6
Aqoxy2G02255 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 7.1e-27 125.2 88 70.5
CDE05G0161 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 4.6e-26 122.5 237 36.7
Cc08_g04800 Coffea canephora HOM05D003598 ORTHO05D004198 4.6e-26 122.5 169 44.4
CDE02G3181 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 6.1e-26 122.1 263 34.2
Hund19574 Selenicereus undatus HOM05D003598 ORTHO05D004198 7.9e-26 121.7 84 73.8
SEGI_19284 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 5.1e-25 119.0 191 42.9
Lsat_1_v5_gn_3_62741 Lactuca sativa HOM05D003598 ORTHO05D004198 1.5e-24 117.5 139 50.4
SGA_v2.0_scaffold49G18286 Striga asiatica HOM05D003598 ORTHO05D004198 9.7e-24 114.8 93 65.6
SEGI_23700 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 5.9e-21 105.5 130 47.7
Hund19575 Selenicereus undatus HOM05D003598 ORTHO05D004198 7.7e-21 105.1 104 56.7
Hund31482 Selenicereus undatus HOM05D003598 ORTHO05D004198 5.0e-20 102.4 77 70.1
CDE05G1904 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.1e-19 101.3 79 62.0
Sc06g0004000 Simmondsia chinensis HOM05D003598 ORTHO05D004198 1.9e-19 100.5 236 33.9
Lj1g0005490 Lotus japonicus HOM05D003598 ORTHO05D004198 5.5e-19 99.0 204 38.7
SMO367G0289 Selaginella moellendorffii HOM05D003598 ORTHO05D004198 9.4e-19 98.2 194 38.1
Cc00_g26130 Coffea canephora HOM05D003598 ORTHO05D004198 1.0e-17 94.7 150 42.7
CsaV3_3G032510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 2.3e-17 93.6 62 80.6
Mapoly0032s0120 Marchantia polymorpha HOM05D003598 ORTHO05D004198 8.8e-17 91.7 234 31.2
Glyma.U018351 Glycine max HOM05D003598 ORTHO05D004198 9.7e-16 88.2 63 73.0
Lsat_1_v5_gn_6_87300 Lactuca sativa HOM05D003598 ORTHO05D004198 3.7e-15 86.3 247 27.5
AagrBONN_evm.TU.Sc2ySwM_368.147 Anthoceros agrestis HOM05D003598 ORTHO05D004198 1.4e-09 67.8 135 37.8
Pp3c13_7070 Physcomitrium patens HOM05D003598 ORTHO05D004198 5.1e-09 65.9 122 36.1
C09p58280 Brassica napus HOM05D003598 ORTHO05D004198 7.4e-08 62.0 151 27.2
CBR_g263 Chara braunii HOM05D003598 ORTHO05D004198 9.7e-08 61.6 126 38.1
Lsat_1_v5_gn_6_87320 Lactuca sativa HOM05D003598 ORTHO05D009814 2.8e-07 60.1 247 23.9
QL02p006829 Quercus lobata HOM05D006704 ORTHO05D004198 3.7e-07 59.7 60 51.7
Pp3c8_19850 Physcomitrium patens HOM05D003598 ORTHO05D004198 3.1e-06 56.6 121 35.5
QL09p042102 Quercus lobata HOM05D003598 ORTHO05D004198 4.1e-06 56.2 155 28.4
BcaB08g36681 Brassica carinata HOM05D003598 ORTHO05D004198 5.3e-06 55.8 195 25.1
QL04p035400 Quercus lobata HOM05D000021 ORTHO05D000010 5.3e-06 55.8 56 50.0


User provided reference genes

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