Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 3.1e-76 290.4 176 100.0
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 1.2e-64 251.9 176 89.8
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.5e-64 250.4 176 78.4
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.0e-63 248.8 176 88.6
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.0e-63 248.8 176 89.2
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.0e-63 248.8 176 89.2
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 2.2e-42 177.9 178 56.2
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 7.1e-41 172.9 175 63.4
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 2.7e-40 171.0 175 53.1
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 7.9e-40 169.5 142 64.1
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 3.0e-39 167.5 175 64.6
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 5.1e-39 166.8 177 52.5
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 5.1e-39 166.8 177 52.5
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 6.7e-39 166.4 174 61.5
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 8.7e-39 166.0 221 49.3
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 1.1e-38 165.6 175 50.3
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 2.8e-37 161.0 176 51.1
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 2.8e-37 161.0 176 52.3
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 3.4e-35 154.1 170 67.1
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 4.5e-35 153.7 177 63.8
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 4.6e-32 143.7 178 47.2
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 4.6e-32 143.7 178 47.2
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 7.9e-32 142.9 174 46.6
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 7.9e-32 142.9 175 49.1
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.8e-31 141.7 178 46.1
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 5.1e-31 140.2 175 61.1
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 2.5e-30 137.9 178 59.6
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 4.3e-30 137.1 177 45.8
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 1.3e-29 135.6 183 45.9
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 1.6e-29 135.2 175 57.1
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 2.1e-29 134.8 174 44.8
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 2.8e-29 134.4 177 44.1
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 3.7e-29 134.0 171 46.8
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 4.8e-29 133.7 178 60.1
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 1.8e-28 131.7 140 49.3
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 3.1e-28 131.0 174 56.9
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 4.0e-28 130.6 174 44.3
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 5.3e-28 130.2 172 59.9
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 9.0e-28 129.4 178 56.7
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 1.2e-27 129.0 141 50.4
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 1.5e-27 128.6 173 42.2
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 2.0e-27 128.3 182 47.3
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 2.0e-27 128.3 174 43.1
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 2.2e-26 124.8 174 42.5
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 3.8e-26 124.0 183 41.5
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.4e-25 122.1 177 43.5
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 1.4e-25 122.1 175 42.3
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 2.5e-25 121.3 182 53.3
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 5.5e-25 120.2 175 40.6
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.2e-24 119.0 97 57.7
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 2.7e-24 117.9 73 69.9
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 4.6e-24 117.1 156 42.9
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 1.3e-23 115.5 174 53.4
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 1.8e-23 115.2 177 40.1
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 1.8e-23 115.2 181 40.9
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 2.3e-23 114.8 183 51.4
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 2.3e-23 114.8 144 47.2
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 3.0e-23 114.4 144 46.5
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 3.9e-23 114.0 190 53.2
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 3.9e-23 114.0 179 41.9
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 1.1e-22 112.5 143 50.3
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 1.5e-22 112.1 97 61.9
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 1.5e-22 112.1 175 38.9
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 2.5e-22 111.3 179 40.8
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 5.7e-22 110.2 116 45.7
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 5.7e-22 110.2 116 46.6
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 5.7e-22 110.2 179 40.8
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 7.4e-22 109.8 139 42.4
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 7.4e-22 109.8 139 42.4
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 1.3e-21 109.0 142 44.4
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 1.3e-21 109.0 171 43.9
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 1.6e-21 108.6 96 53.1
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 2.8e-21 107.8 188 50.5
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 2.8e-21 107.8 145 44.8
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 3.7e-21 107.5 140 60.0
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 3.7e-21 107.5 178 38.8
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 4.8e-21 107.1 173 52.0
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 1.4e-20 105.5 183 38.3
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 4.1e-20 104.0 177 38.4
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 4.1e-20 104.0 141 44.0
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 2.0e-19 101.7 144 43.8
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 5.9e-19 100.1 107 49.5
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 1.7e-18 98.6 190 50.5
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 2.9e-18 97.8 135 43.0
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 3.8e-18 97.4 51 94.1
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 1.9e-17 95.1 69 63.8
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 2.5e-17 94.7 177 48.0
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 1.4e-15 89.0 172 33.7
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 1.4e-15 89.0 153 36.6
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 6.3e-13 80.1 75 53.3
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 1.3e-10 72.4 107 40.2
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 2.2e-10 71.6 47 68.1
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 1.4e-09 68.9 75 46.7


User provided reference genes

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