Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0449541 Rosa chinensis HOM05D000576 ORTHO05D000368 1.1e-50 203.0 97 100.0
RcHm_v2.0_Chr3g0449571 Rosa chinensis HOM05D000576 ORTHO05D000368 3.5e-46 188.0 97 91.8
RcHm_v2.0_Chr3g0449591 Rosa chinensis HOM05D000576 ORTHO05D000368 6.2e-43 177.2 97 87.6
RcHm_v2.0_Chr3g0449531 Rosa chinensis HOM05D000576 ORTHO05D000368 5.2e-42 174.1 97 85.6
RcHm_v2.0_Chr3g0449581 Rosa chinensis HOM05D000576 ORTHO05D000368 1.5e-41 172.6 97 84.5
FAN05G5357 Fragaria x ananassa HOM05D000576 ORTHO05D000368 5.4e-39 164.1 96 79.2
FvH4_6g01850 Fragaria vesca HOM05D000576 ORTHO05D000368 1.5e-36 156.0 98 72.4
Prupe.6G354500 Prunus persica HOM05D000576 ORTHO05D000368 2.1e-27 125.6 93 63.4
MD02G1269100 Malus domestica HOM05D000576 ORTHO05D000368 2.4e-26 122.1 96 60.4
Prupe.7G247200 Prunus persica HOM05D000576 ORTHO05D000368 2.2e-24 115.5 96 59.4
FvH4_1g04271 Fragaria vesca HOM05D000576 ORTHO05D000368 8.4e-24 113.6 92 57.6
FAN14G4749 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.4e-23 112.1 62 77.4
FAN19G1792 Fragaria x ananassa HOM05D000576 ORTHO05D000368 4.2e-23 111.3 92 55.4
FvH4_1g04280 Fragaria vesca HOM05D000576 ORTHO05D000368 1.2e-22 109.8 92 55.4
FvH4_1g04270 Fragaria vesca HOM05D000576 ORTHO05D000368 2.7e-22 108.6 92 55.4
FvH4_1g04260 Fragaria vesca HOM05D002514 ORTHO05D000368 1.3e-21 106.3 88 54.5
Prupe.8G159200 Prunus persica HOM05D000576 ORTHO05D000368 1.8e-21 105.9 93 55.9
FvH4_6g01861 Fragaria vesca HOM05D000576 ORTHO05D000368 2.3e-21 105.5 58 77.6
Prupe.3G194200 Prunus persica HOM05D000576 ORTHO05D000368 2.3e-21 105.5 91 56.0
FAN19G2457 Fragaria x ananassa HOM05D000576 ORTHO05D000368 3.0e-21 105.1 88 54.5
MD02G1024100 Malus domestica HOM05D000576 ORTHO05D000368 3.9e-21 104.8 96 53.1
FAN28G2519 Fragaria x ananassa HOM05D000576 ORTHO05D000368 6.7e-21 104.0 89 55.1
MD02G1028400 Malus domestica HOM05D000005 ORTHO05D000368 5.6e-20 100.9 91 53.8
RcHm_v2.0_Chr3g0448841 Rosa chinensis HOM05D000576 ORTHO05D000368 7.4e-20 100.5 92 52.2
Prupe.5G181600 Prunus persica HOM05D000576 ORTHO05D000368 1.6e-19 99.4 97 50.5
FAN05G3726 Fragaria x ananassa HOM05D000576 ORTHO05D000368 8.2e-19 97.1 93 51.6
RcHm_v2.0_Chr3g0449821 Rosa chinensis HOM05D000576 ORTHO05D000368 8.2e-19 97.1 93 52.7
FvH4_6g01970 Fragaria vesca HOM05D000576 ORTHO05D000368 1.1e-18 96.7 93 51.6
FAN05G5531 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.1e-18 96.7 93 51.6
FAN02G2935 Fragaria x ananassa HOM05D000576 ORTHO05D000368 4.0e-18 94.7 93 51.6
RcHm_v2.0_Chr7g0192671 Rosa chinensis HOM05D000576 ORTHO05D000368 1.2e-17 93.2 95 49.5
FAN14G5717 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.0e-17 92.4 93 50.5
FAN03G3513 Fragaria x ananassa HOM05D000576 ORTHO05D008832 3.4e-17 91.7 99 51.5
FAN01G1594 Fragaria x ananassa HOM05D000576 ORTHO05D000368 7.6e-17 90.5 96 51.0
FAN06G0443 Fragaria x ananassa HOM05D000576 ORTHO05D000368 7.6e-17 90.5 97 51.5
RcHm_v2.0_Chr7g0184471 Rosa chinensis HOM05D000576 ORTHO05D000368 7.6e-17 90.5 91 47.3
RcHm_v2.0_Chr1g0360451 Rosa chinensis HOM05D000576 ORTHO05D000368 2.2e-16 89.0 88 50.0
FvH4_7g08150 Fragaria vesca HOM05D000576 ORTHO05D000368 3.8e-16 88.2 97 49.5
RcHm_v2.0_Chr2g0160681 Rosa chinensis HOM05D000576 ORTHO05D000368 3.8e-16 88.2 92 48.9
FAN03G2698 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.5e-15 85.5 95 48.4
FAN01G1348 Fragaria x ananassa HOM05D000576 ORTHO05D000368 5.5e-15 84.3 94 48.9
RcHm_v2.0_Chr7g0184481 Rosa chinensis HOM05D000576 ORTHO05D000368 5.5e-15 84.3 90 45.6
FAN03G2208 Fragaria x ananassa HOM05D008289 ORTHO05D008832 9.3e-15 83.6 97 48.5
Dinv21743 Davidia involucrata HOM05D000576 ORTHO05D000368 7.9e-14 80.5 95 47.4
FAN10G0775 Fragaria x ananassa HOM05D000576 ORTHO05D008832 7.9e-14 80.5 93 47.3
RcHm_v2.0_Chr1g0330451 Rosa chinensis HOM05D000576 ORTHO05D000368 7.9e-14 80.5 92 42.4
FAN05G4495 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.8e-13 79.3 95 47.4
FAN05G5241 Fragaria x ananassa HOM05D000576 ORTHO05D000368 3.0e-13 78.6 95 47.4
RcHm_v2.0_Chr1g0330541 Rosa chinensis HOM05D000576 ORTHO05D000368 3.0e-13 78.6 92 42.4
Prupe.7G069200 Prunus persica HOM05D000576 ORTHO05D000368 3.9e-13 78.2 96 45.8
RcHm_v2.0_Chr6g0302471 Rosa chinensis HOM05D000576 ORTHO05D035880 6.7e-13 77.4 92 43.5
FAN14G0093 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.1e-12 76.6 95 45.3
FAN09G1828 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.5e-12 76.3 94 44.7
FvH4_6g01230 Fragaria vesca HOM05D000576 ORTHO05D000368 2.5e-12 75.5 95 45.3
Migut.G00964 Erythranthe guttata HOM05D000576 ORTHO05D000368 3.3e-12 75.1 95 44.2
MSTRG.8963 Avicennia marina HOM05D000576 ORTHO05D000368 4.3e-12 74.7 95 46.3
MD14G1064800 Malus domestica HOM05D000576 ORTHO05D000368 5.7e-12 74.3 96 44.8
Prupe.5G083600 Prunus persica HOM05D000576 ORTHO05D000368 5.7e-12 74.3 93 40.9
Rhsim07G0244200 Rhododendron simsii HOM05D000576 ORTHO05D000368 1.6e-11 72.8 94 41.5
Migut.G01093 Erythranthe guttata HOM05D000576 ORTHO05D000368 2.2e-11 72.4 92 43.5
FvH4_6g01240 Fragaria vesca HOM05D000576 ORTHO05D000368 4.8e-11 71.2 97 44.3
FAN14G1549 Fragaria x ananassa HOM05D000576 ORTHO05D000368 6.3e-11 70.9 96 43.8
Hma1.2p1_1677F.1_g297050 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 6.3e-11 70.9 90 45.6
Hma1.2p1_1488F.1_g286620 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 8.2e-11 70.5 90 45.6
Prupe.5G213700 Prunus persica HOM05D000576 ORTHO05D000368 8.2e-11 70.5 91 41.8
Nitab4.5_0005673g0030 Nicotiana tabacum HOM05D000576 ORTHO05D000368 1.4e-10 69.7 96 43.8
Migut.J01303 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.8e-10 69.3 93 43.0
RcHm_v2.0_Chr2g0105201 Rosa chinensis HOM05D000576 ORTHO05D000368 2.4e-10 68.9 89 47.2
SGA_v2.0_scaffold44G16702 Striga asiatica HOM05D000576 ORTHO05D000368 2.4e-10 68.9 94 44.7
Migut.J00214 Erythranthe guttata HOM05D000576 ORTHO05D000368 4.1e-10 68.2 93 40.9
FAN01G0824 Fragaria x ananassa HOM05D000576 ORTHO05D000368 4.1e-10 68.2 86 44.2
ECA233G4739 Erigeron canadensis HOM05D000576 ORTHO05D000368 5.3e-10 67.8 93 41.9
Migut.J00273 Erythranthe guttata HOM05D000576 ORTHO05D000368 5.3e-10 67.8 91 42.9
MD11G1200500 Malus domestica HOM05D000576 ORTHO05D000368 5.3e-10 67.8 46 67.4
RcHm_v2.0_Chr7g0197551 Rosa chinensis HOM05D000576 ORTHO05D000368 5.3e-10 67.8 91 41.8
Migut.J00211 Erythranthe guttata HOM05D000576 ORTHO05D000368 6.9e-10 67.4 93 39.8
HanXRQChr08g0221771 Helianthus annuus HOM05D000576 ORTHO05D000368 9.0e-10 67.0 93 41.9
Peaxi162Scf00310g00017 Petunia axillaris HOM05D000576 ORTHO05D000368 1.2e-09 66.6 91 40.7
Hma1.2p1_0108F.1_g052030 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 1.5e-09 66.2 85 42.4
RcHm_v2.0_Chr2g0105251 Rosa chinensis HOM05D000576 ORTHO05D029628 1.5e-09 66.2 91 44.0
Migut.J00210 Erythranthe guttata HOM05D000576 ORTHO05D000368 2.0e-09 65.9 92 39.1
Migut.J00208 Erythranthe guttata HOM05D000576 ORTHO05D000368 3.4e-09 65.1 99 37.4
Peaxi162Scf00041g00112 Petunia axillaris HOM05D000576 ORTHO05D000368 3.4e-09 65.1 91 39.6
Nitab4.5_0008827g0010 Nicotiana tabacum HOM05D000576 ORTHO05D000368 4.5e-09 64.7 93 39.8
QL08p062492 Quercus lobata HOM05D000576 ORTHO05D000368 4.5e-09 64.7 85 43.5
Cc10_g03840 Coffea canephora HOM05D000576 ORTHO05D000368 5.9e-09 64.3 95 38.9
COL.COLO4_27090 Corchorus olitorius HOM05D000576 ORTHO05D000368 5.9e-09 64.3 93 34.4
Migut.J00156 Erythranthe guttata HOM05D000576 ORTHO05D013658 5.9e-09 64.3 85 41.2
FAN05G2942 Fragaria x ananassa HOM05D000576 ORTHO05D000368 5.9e-09 64.3 104 37.5
MD15G1437600 Malus domestica HOM05D000576 ORTHO05D000368 5.9e-09 64.3 93 37.6
Peaxi162Scf00041g00103 Petunia axillaris HOM05D000576 ORTHO05D000368 5.9e-09 64.3 95 36.8
Cfa001772 Carpinus fangiana HOM05D000576 ORTHO05D000368 7.6e-09 63.9 92 40.2
Migut.G00965 Erythranthe guttata HOM05D000576 ORTHO05D000368 7.6e-09 63.9 93 37.6
Migut.J00215 Erythranthe guttata HOM05D000576 ORTHO05D000368 7.6e-09 63.9 85 43.5
FvH4_2g38801 Fragaria vesca HOM05D000576 ORTHO05D000368 1.0e-08 63.5 92 41.3
Migut.F00694 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.3e-08 63.2 93 40.9
Migut.J00168 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.3e-08 63.2 86 41.9
COL.COLO4_27089 Corchorus olitorius HOM05D000576 ORTHO05D000368 1.7e-08 62.8 97 36.1
Haze_16783 Corylus avellana HOM05D000576 ORTHO05D000368 1.7e-08 62.8 84 41.7
Oeu048256.1 Olea europaea HOM05D000576 ORTHO05D000368 1.7e-08 62.8 93 41.9
Prupe.7G069300 Prunus persica HOM05D000576 ORTHO05D000368 1.7e-08 62.8 87 42.5
Cc10_g03770 Coffea canephora HOM05D000576 ORTHO05D000368 2.2e-08 62.4 99 38.4
Migut.F01284 Erythranthe guttata HOM05D000576 ORTHO05D000368 2.2e-08 62.4 97 39.2
Migut.I00397 Erythranthe guttata HOM05D000576 ORTHO05D000368 2.2e-08 62.4 92 37.0
PGSC0003DMG400026860 Solanum tuberosum HOM05D000576 ORTHO05D000368 2.2e-08 62.4 95 40.0
COL.COLO4_22884 Corchorus olitorius HOM05D000576 ORTHO05D000368 3.8e-08 61.6 83 39.8
Nitab4.5_0000099g0260 Nicotiana tabacum HOM05D000576 ORTHO05D000368 3.8e-08 61.6 90 41.1
CAN.G1261.4 Capsicum annuum HOM05D000576 ORTHO05D000368 5.0e-08 61.2 88 38.6
TWI18G0229 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 5.0e-08 61.2 89 37.1
CSS0015792 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 6.5e-08 60.8 96 39.6
CAN.G617.7 Capsicum annuum HOM05D000576 ORTHO05D000368 6.5e-08 60.8 93 38.7
Cc11_g02250 Coffea canephora HOM05D000576 ORTHO05D000368 6.5e-08 60.8 95 41.1
Migut.J00163 Erythranthe guttata HOM05D000576 ORTHO05D000368 8.5e-08 60.5 93 37.6
TAR636G3326 Trochodendron aralioides HOM05D000576 ORTHO05D000368 8.5e-08 60.5 90 35.6
FvH4_6g05150 Fragaria vesca HOM05D000576 ORTHO05D000368 1.9e-07 59.3 97 33.0
TWI18G0117 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 1.9e-07 59.3 87 36.8
Hma1.2p1_0024F.1_g015920 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 3.2e-07 58.5 95 41.1
Hma1.2p1_2024F.1_g311420 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 3.2e-07 58.5 95 41.1
FAN05G4776 Fragaria x ananassa HOM05D000205 ORTHO05D000438 4.2e-07 58.2 96 33.3
FAN05G5654 Fragaria x ananassa HOM05D000576 ORTHO05D000368 4.2e-07 58.2 96 33.3
RcHm_v2.0_Chr1g0364611 Rosa chinensis HOM05D000576 ORTHO05D000368 5.5e-07 57.8 72 40.3
COL.COLO4_31632 Corchorus olitorius HOM05D001286 ORTHO05D000440 9.3e-07 57.0 94 39.4
PGSC0003DMG402009486 Solanum tuberosum HOM05D000576 ORTHO05D000368 9.3e-07 57.0 93 35.5
FAN05G2263 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.2e-06 56.6 66 47.0
FvH4_6g05140 Fragaria vesca HOM05D000576 ORTHO05D000368 1.6e-06 56.2 91 35.2
FAN09G4026 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.6e-06 56.2 101 35.6
FAN26G1341 Fragaria x ananassa HOM05D000576 ORTHO05D029628 2.7e-06 55.5 90 40.0
RcHm_v2.0_Chr7g0191131 Rosa chinensis HOM05D000576 ORTHO05D000368 2.7e-06 55.5 72 38.9
TWI32G0666 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 2.7e-06 55.5 82 37.8
TAR636G0024 Trochodendron aralioides HOM05D000576 ORTHO05D000368 2.7e-06 55.5 88 37.5
Lsat_1_v5_gn_9_62080 Lactuca sativa HOM05D000576 ORTHO05D000368 4.6e-06 54.7 93 32.3
Solyc04g072435.1 Solanum lycopersicum HOM05D000576 ORTHO05D000368 4.6e-06 54.7 97 35.1
Ciclev10008279m.g Citrus clementina HOM05D000576 ORTHO05D000368 6.1e-06 54.3 96 37.5
Migut.J00888 Erythranthe guttata HOM05D000576 ORTHO05D000368 6.1e-06 54.3 84 39.3
HanXRQChr09g0251901 Helianthus annuus HOM05D000576 ORTHO05D000368 7.9e-06 53.9 95 35.8
PGSC0003DMG400017941 Solanum tuberosum HOM05D000576 ORTHO05D000368 7.9e-06 53.9 99 37.4
PGSC0003DMG401027561 Solanum tuberosum HOM05D000576 ORTHO05D000368 7.9e-06 53.9 94 39.4


User provided reference genes

Program Settings