Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 0.0e+00 1469.1 727 100.0
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 0.0e+00 1344.3 737 90.4
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 0.0e+00 1302.3 772 85.1
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 0.0e+00 1296.6 774 84.8
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 0.0e+00 1296.2 775 84.5
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 0.0e+00 1198.0 743 80.9
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 0.0e+00 1169.8 739 79.0
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 1.7e-310 1068.9 743 71.1
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 3.6e-305 1051.2 743 70.0
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 3.4e-303 1044.6 742 69.8
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 1.3e-302 1042.7 743 69.2
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 8.7e-299 1030.0 741 69.0
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 2.5e-298 1028.5 743 68.4
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 5.6e-298 1027.3 743 68.1
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 1.6e-297 1025.8 743 68.1
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 2.1e-297 1025.4 743 68.0
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 5.8e-295 1017.3 743 67.6
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 1.8e-291 1005.7 740 67.4
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 1.3e-289 999.6 759 65.6
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 9.3e-285 983.4 743 66.1
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 6.3e-281 970.7 743 64.7
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 4.5e-279 964.5 745 64.6
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 5.9e-279 964.1 743 65.7
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 3.8e-278 961.4 745 63.6
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 5.5e-277 957.6 773 61.4
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 9.4e-277 956.8 744 63.7
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 1.2e-276 956.4 744 64.0
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 1.2e-276 956.4 745 64.6
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 7.9e-276 953.7 745 63.4
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 1.0e-275 953.4 740 64.5
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 8.8e-275 950.3 659 71.3
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 1.7e-273 946.0 743 63.9
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 2.8e-273 945.3 741 65.0
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 2.4e-272 942.2 660 69.8
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 2.4e-272 942.2 725 65.2
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 1.2e-271 939.9 826 59.4
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 9.4e-269 930.2 740 63.9
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 4.8e-265 917.9 740 62.7
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 4.1e-264 914.8 769 60.9
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 7.0e-264 914.1 737 62.0
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 1.2e-263 913.3 739 62.0
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 1.0e-262 910.2 606 74.9
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 1.3e-262 909.8 746 62.3
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 1.7e-262 909.4 742 61.3
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 3.2e-261 905.2 745 61.3
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 4.2e-261 904.8 743 62.4
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 4.2e-261 904.8 798 58.9
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 4.2e-261 904.8 746 62.1
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 3.0e-259 898.7 739 61.7
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 3.0e-259 898.7 739 61.6
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 6.7e-259 897.5 755 60.4
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 8.8e-259 897.1 743 61.8
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 1.1e-258 896.7 737 62.0
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 2.0e-258 896.0 679 66.1
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 2.0e-258 896.0 743 61.6
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 5.7e-258 894.4 748 61.1
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 5.7e-258 894.4 666 65.9
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 1.7e-257 892.9 735 61.2
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 2.2e-257 892.5 737 60.2
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 6.3e-257 891.0 738 60.4
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 3.1e-256 888.6 742 60.6
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 3.1e-256 888.6 665 67.4
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 5.3e-256 887.9 735 60.8
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 1.6e-255 886.3 739 61.0
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 3.5e-255 885.2 739 61.2
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 1.0e-254 883.6 768 59.5
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 1.7e-254 882.9 738 61.8
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 1.7e-254 882.9 729 61.9
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 2.9e-254 882.1 735 60.5
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 2.9e-254 882.1 769 58.9
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 8.5e-254 880.6 737 61.1
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 1.9e-253 879.4 739 60.1
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 2.5e-253 879.0 727 62.6
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 1.6e-252 876.3 757 59.0
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.6e-252 876.3 745 60.0
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 2.1e-252 875.9 746 60.9
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 3.0e-251 872.1 670 65.7
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 7.5e-250 867.5 740 60.3
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 7.5e-250 867.5 740 60.3
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 9.7e-250 867.1 738 60.3
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 9.7e-250 867.1 743 59.5
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 3.1e-248 862.1 691 63.0
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 5.3e-248 861.3 666 63.8
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 1.6e-247 859.8 745 59.2
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 6.1e-244 847.8 759 57.7
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 6.8e-243 844.3 745 59.3
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 2.0e-242 842.8 755 56.7
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 3.4e-242 842.0 811 55.1
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 7.0e-240 834.3 734 58.9
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 1.9e-237 826.2 742 58.8
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 2.0e-234 816.2 750 56.5
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 1.3e-230 803.5 654 62.8
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 2.3e-230 802.7 665 61.8
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 7.3e-229 797.7 735 56.6
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 4.1e-224 781.9 733 56.3
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 3.6e-220 768.8 733 55.8
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 4.7e-220 768.5 743 54.8
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 1.4e-219 766.9 802 52.2
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 7.5e-218 761.1 571 68.8
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 4.1e-216 755.4 735 54.4
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 5.1e-214 748.4 749 54.5
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 2.0e-210 736.5 942 45.9
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 4.6e-199 698.7 640 57.3
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 2.1e-196 689.9 737 49.9
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 3.6e-188 662.5 738 50.0
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 4.8e-188 662.1 622 57.4
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 3.1e-187 659.4 738 50.0
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 6.2e-172 608.6 558 55.4
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 1.4e-163 580.9 654 50.5
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 1.2e-162 577.8 790 44.3
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 9.4e-160 568.2 637 50.1
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 8.2e-156 555.1 524 55.0
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 6.9e-155 552.0 576 49.8
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 5.1e-150 535.8 630 48.6
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 5.3e-147 525.8 553 52.4
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 5.0e-145 519.2 594 48.3
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.7e-122 443.7 395 57.5
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 1.7e-116 424.5 398 54.5
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 8.9e-94 349.0 354 55.4
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 4.4e-93 346.7 184 92.4
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 2.4e-83 314.3 525 38.1
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 3.2e-75 287.3 635 33.2
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 7.3e-72 276.2 701 30.2
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 6.9e-70 269.6 147 87.8
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.1e-63 248.1 372 38.7
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 6.9e-54 216.5 266 45.5
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.0e-53 214.9 229 48.9
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 5.8e-53 213.4 151 74.2
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 1.2e-45 189.1 538 28.6
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 5.0e-44 183.7 160 58.1
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 2.6e-32 144.8 102 69.6
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 7.7e-29 133.3 70 85.7
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 1.3e-28 132.5 70 82.9
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 4.2e-27 127.5 70 81.4
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 1.8e-22 112.1 175 43.4
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 1.2e-21 109.4 56 87.5
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 1.6e-18 99.0 98 42.9
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 3.4e-16 91.3 182 38.5
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 9.8e-16 89.7 65 66.2
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 1.3e-15 89.4 78 57.7
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 2.0e-13 82.0 50 68.0
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 1.9e-11 75.5 69 59.4
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 1.6e-10 72.4 66 53.0
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 4.7e-10 70.9 66 53.0
Hund05190 Selenicereus undatus HOM05D005077 ORTHO05D006889 3.4e-08 64.7 44 68.2
C05p29450 Brassica napus HOM05D005077 ORTHO05D018175 9.2e-06 56.6 60 50.0
BolC5t31675H Brassica oleracea HOM05D005077 ORTHO05D018175 9.2e-06 56.6 60 50.0


User provided reference genes

Program Settings