Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0449091 Rosa chinensis HOM05D000780 ORTHO05D009033 4.4e-167 591.3 313 100.0
FvH4_6g01461 Fragaria vesca HOM05D000780 ORTHO05D009033 1.1e-144 516.9 307 90.6
MD12G1251900 Malus domestica HOM05D000780 ORTHO05D009033 2.5e-130 469.2 309 81.2
FAN05G0905 Fragaria x ananassa HOM05D000780 ORTHO05D001132 3.4e-127 458.8 317 79.5
FAN14G3828 Fragaria x ananassa HOM05D000780 ORTHO05D001132 5.9e-127 458.0 317 80.4
FAN14G4937 Fragaria x ananassa HOM05D000780 ORTHO05D001132 1.7e-126 456.4 318 79.9
FAN02G1432 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.1e-125 453.8 308 81.2
Prupe.6G353000 Prunus persica HOM05D000780 ORTHO05D009033 9.1e-112 407.5 306 72.5
Ciclev10021307m.g Citrus clementina HOM05D000780 ORTHO05D009033 1.6e-108 396.7 305 71.8
TAR633G0111 Trochodendron aralioides HOM05D000780 ORTHO05D009033 3.0e-107 392.5 301 72.1
QL01p042200 Quercus lobata HOM05D000780 ORTHO05D009033 5.2e-107 391.7 308 71.1
GSVIVG01026324001 Vitis vinifera HOM05D000780 ORTHO05D009033 2.6e-106 389.4 312 69.9
Thecc.05G266300 Theobroma cacao HOM05D000780 ORTHO05D009033 1.8e-104 383.3 305 68.9
CSS0005756 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 1.6e-103 380.2 316 67.4
Gohir.D13G172200 Gossypium hirsutum HOM05D000780 ORTHO05D009033 5.9e-103 378.3 304 68.4
Gorai.013G188500 Gossypium raimondii HOM05D000780 ORTHO05D009033 7.7e-103 377.9 304 68.4
Atru.chr2.1117 Acer truncatum HOM05D000780 ORTHO05D009033 1.0e-102 377.5 310 68.4
Gohir.A13G161800 Gossypium hirsutum HOM05D000780 ORTHO05D009033 1.3e-102 377.1 303 67.7
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 1.7e-102 376.7 310 67.7
TWI34G1716 Tripterygium wilfordii HOM05D000780 ORTHO05D009033 1.7e-102 376.7 309 67.0
Nn1g03021 Nelumbo nucifera HOM05D000780 ORTHO05D009033 3.8e-102 375.6 305 69.5
CsaV3_1G045040 Cucumis sativus L. HOM05D000780 ORTHO05D009033 1.5e-101 373.6 305 68.5
Potri.019G023700 Populus trichocarpa HOM05D000780 ORTHO05D009033 3.2e-101 372.5 303 68.3
Aqoxy5G00106 Aquilegia oxysepala HOM05D000780 ORTHO05D009033 6.1e-100 368.2 304 65.1
Glyma.20G221500 Glycine max HOM05D000780 ORTHO05D009033 2.3e-99 366.3 292 68.2
Manes.09G146600 Manihot esculenta HOM05D000780 ORTHO05D009033 2.2e-97 359.8 306 67.0
Hma1.2p1_0130F.1_g060510 Hydrangea macrophylla HOM05D000780 ORTHO05D009033 6.3e-97 358.2 310 65.5
Phvul.L002032 Phaseolus vulgaris HOM05D000780 ORTHO05D009033 1.1e-96 357.5 290 65.9
VMungo0720G1285 Vigna mungo HOM05D000780 ORTHO05D009033 1.4e-96 357.1 292 65.8
Actinidia06831 Actinidia chinensis HOM05D000780 ORTHO05D009033 1.2e-95 354.0 317 65.9
Ca_09986_v3 Cicer arietinum L. HOM05D000780 ORTHO05D009033 1.6e-95 353.6 298 63.4
PGR004G1412 Punica granatum HOM05D000780 ORTHO05D009033 1.0e-94 350.9 305 63.9
Rhsim05G0170400 Rhododendron simsii HOM05D000780 ORTHO05D009033 6.6e-94 348.2 326 63.5
THA.LOC104821566 Tarenaya hassleriana HOM05D000780 ORTHO05D009033 6.6e-94 348.2 321 61.4
Carub.0007s3248 Capsella rubella HOM05D000780 ORTHO05D009033 8.6e-94 347.8 308 62.3
Medtr1g079763 Medicago truncatula HOM05D000780 ORTHO05D009033 8.6e-94 347.8 302 61.6
Lj5g0019051 Lotus japonicus HOM05D000780 ORTHO05D009033 2.5e-93 346.3 311 61.7
Lalb_Chr21g0311301 Lupinus albus HOM05D000780 ORTHO05D009033 2.5e-93 346.3 302 63.6
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 3.3e-93 345.9 299 62.9
BraA04t16719Z Brassica rapa HOM05D000780 ORTHO05D009033 1.6e-92 343.6 306 62.1
BcaC02g09559 Brassica carinata HOM05D000780 ORTHO05D009033 2.8e-92 342.8 307 61.9
BolC4t25992H Brassica oleracea HOM05D000780 ORTHO05D009033 2.8e-92 342.8 307 61.9
C04p44170 Brassica napus HOM05D000780 ORTHO05D009033 3.6e-92 342.4 307 61.9
arahy.Tifrunner.gnm1.ann1.ZAXM00 Arachis hypogaea HOM05D000780 ORTHO05D009033 4.7e-92 342.0 299 62.9
Sp7g05110 Schrenkiella parvula HOM05D000780 ORTHO05D009033 1.8e-91 340.1 304 61.2
MBI10_g26046_MAGBIO Magnolia biondii HOM05D000780 ORTHO05D009033 2.3e-91 339.7 287 65.5
A04p10530 Brassica napus HOM05D000780 ORTHO05D009033 3.0e-91 339.3 309 62.1
ClCG03G011490 Citrullus lanatus HOM05D000780 ORTHO05D009033 1.5e-90 337.0 304 62.8
Ah.06g187930 Amaranthus hybridus HOM05D000780 ORTHO05D009033 2.0e-90 336.7 307 61.6
arahy.Tifrunner.gnm1.ann1.09X96J Arachis hypogaea HOM05D000780 ORTHO05D009033 2.6e-90 336.3 299 62.2
MSTRG.27431 Avicennia marina HOM05D000780 ORTHO05D009033 4.4e-90 335.5 268 69.0
AT5G37360 Arabidopsis thaliana HOM05D000780 ORTHO05D009033 5.7e-90 335.1 306 61.1
AL7G45990 Arabidopsis lyrata HOM05D000780 ORTHO05D009033 7.5e-90 334.7 305 61.3
Potri.013G050300 Populus trichocarpa HOM05D000780 ORTHO05D009033 7.5e-90 334.7 270 66.7
Eucgr.H04210 Eucalyptus grandis HOM05D000780 ORTHO05D009033 1.7e-89 333.6 305 62.6
Thhalv10027857m.g Eutrema salsugineum HOM05D000780 ORTHO05D009033 3.7e-89 332.4 314 58.9
EL10Ac4g09771 Beta vulgaris HOM05D000780 ORTHO05D009033 1.1e-88 330.9 307 60.6
CANSAT54G0520 Cannabis sativa HOM05D000780 ORTHO05D009033 1.1e-88 330.9 304 63.2
Migut.F02052 Erythranthe guttata HOM05D000780 ORTHO05D009033 1.1e-88 330.9 308 61.0
CARHR215730 Cardamine hirsuta HOM05D000780 ORTHO05D009033 7.0e-88 328.2 306 59.2
MELO3C010086.2 Cucumis melo HOM05D000780 ORTHO05D009033 9.2e-88 327.8 277 66.4
PSO210G3904 Papaver somniferum HOM05D000780 ORTHO05D009033 3.5e-87 325.9 320 59.1
Lsat_1_v5_gn_9_46781 Lactuca sativa HOM05D000780 ORTHO05D009033 1.3e-86 323.9 306 60.1
Solyc04g050470.4 Solanum lycopersicum HOM05D000780 ORTHO05D009033 1.7e-86 323.6 312 59.3
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 3.8e-86 322.4 216 75.0
Sc24g0002520 Simmondsia chinensis HOM05D000780 ORTHO05D009033 5.0e-86 322.0 301 60.8
AUR62006989 Chenopodium quinoa HOM05D000780 ORTHO05D009033 3.3e-85 319.3 302 60.3
ATR0088G058 Amborella trichopoda HOM05D000780 ORTHO05D009033 7.3e-85 318.2 284 61.6
Aa31LG9G18020 Aethionema arabicum HOM05D000780 ORTHO05D009033 2.8e-84 316.2 308 59.4
Nitab4.5_0003148g0030 Nicotiana tabacum HOM05D000780 ORTHO05D009033 3.6e-84 315.8 287 63.8
vmacro19978 Vaccinium macrocarpon HOM05D000780 ORTHO05D009033 4.7e-84 315.5 372 54.3
Hund07171 Selenicereus undatus HOM05D000780 ORTHO05D009033 1.4e-83 313.9 304 58.9
DCAR_030971 Daucus carota HOM05D000780 ORTHO05D009033 1.5e-82 310.5 292 60.6
ECA232G3479 Erigeron canadensis HOM05D000780 ORTHO05D009033 6.4e-81 305.1 276 62.0
SalBow1G6873 Salvia bowleyana HOM05D000780 ORTHO05D009033 2.4e-80 303.1 302 59.6
Glyma.10G167600 Glycine max HOM05D000780 ORTHO05D009033 3.9e-78 295.8 333 55.6
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 8.6e-78 294.7 249 64.3
Nitab4.5_0000841g0080 Nicotiana tabacum HOM05D000780 ORTHO05D009033 5.6e-77 292.0 287 60.6
unitig_37.g12284 Utricularia gibba HOM05D000780 ORTHO05D009033 1.2e-76 290.8 301 57.1
Haze_04472 Corylus avellana HOM05D000780 ORTHO05D009033 6.2e-76 288.5 307 58.3
Sabra19G0033700 Salix brachista HOM05D000780 ORTHO05D009033 6.2e-76 288.5 306 57.5
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 3.1e-75 286.2 317 56.2
SalBow1G5981 Salvia bowleyana HOM05D000780 ORTHO05D009033 4.0e-75 285.8 332 54.2
Dinv01155 Davidia involucrata HOM05D000780 ORTHO05D009033 1.2e-74 284.3 210 72.9
TPR.G10273 Trifolium pratense HOM05D000780 ORTHO05D009033 4.4e-74 282.3 317 55.2
CiPaw.07G074400 Carya illinoinensis HOM05D000780 ORTHO05D009033 5.8e-74 282.0 241 65.6
CSS0024577 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 2.2e-73 280.0 248 65.7
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 8.3e-73 278.1 252 60.7
Os02g0815400 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D009033 2.1e-71 273.5 265 55.1
Zm00001eb258750 Zea mays HOM05D000780 ORTHO05D009033 6.0e-71 271.9 295 52.2
HanXRQChr05g0145151 Helianthus annuus HOM05D000780 ORTHO05D009033 3.6e-68 262.7 286 52.8
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 5.8e-66 255.4 268 54.5
Cpa.g.c33516 Carica papaya HOM05D000780 ORTHO05D009033 2.2e-65 253.4 188 70.2
Peaxi162Scf00077g00138 Petunia axillaris HOM05D000780 ORTHO05D009033 6.4e-65 251.9 219 65.3
MD12G1251000 Malus domestica HOM05D000072 ORTHO05D009033 2.1e-63 246.9 195 70.8
Sed0013634 Sechium edule HOM05D000780 ORTHO05D009033 1.2e-60 237.7 324 49.1
MD12G1250900 Malus domestica HOM05D000780 ORTHO05D009033 1.4e-59 234.2 158 78.5
Eucgr.H04100 Eucalyptus grandis HOM05D000780 ORTHO05D009033 2.4e-56 223.4 216 60.2
AagrBONN_evm.TU.Sc2ySwM_228.3981 Anthoceros agrestis HOM05D000780 ORTHO05D009033 8.7e-54 214.9 296 43.2
Lj2A46G68 Lonicera japonica HOM05D000780 ORTHO05D009033 3.4e-50 203.0 151 71.5
FAN09G0636 Fragaria x ananassa HOM05D000780 ORTHO05D001132 7.8e-47 191.8 114 88.6
SMO172G0144 Selaginella moellendorffii HOM05D000780 ORTHO05D009033 1.6e-44 184.1 213 48.4
FAN05G5022 Fragaria x ananassa HOM05D000780 ORTHO05D009033 3.6e-44 183.0 111 86.5
FAN11G0130 Fragaria x ananassa HOM05D000780 ORTHO05D009033 2.6e-42 176.8 267 48.3
Pp3c18_1300 Physcomitrium patens HOM05D000780 ORTHO05D009033 5.8e-42 175.6 258 44.2
HPP92_009056 Vanilla planifolia HOM05D001254 ORTHO05D001386 4.6e-39 166.0 210 48.6
CBR_g11120 Chara braunii HOM05D000780 ORTHO05D009033 6.0e-39 165.6 239 42.3
Sopen04g021250 Solanum pennellii HOM05D000780 ORTHO05D009033 1.1e-37 161.4 131 67.2
Cc09_g03030 Coffea canephora HOM05D000780 ORTHO05D009033 1.4e-35 154.5 121 69.4
SEGI_21696 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 1.7e-33 147.5 133 57.9
Cc09_g03040 Coffea canephora HOM05D000780 ORTHO05D009033 2.7e-31 140.2 152 52.0
SEGI_05244 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 2.7e-31 140.2 113 65.5
PGSC0003DMG402028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 1.1e-29 134.8 116 63.8
HPP92_009057 Vanilla planifolia HOM05D000780 ORTHO05D009033 1.1e-29 134.8 120 60.0
Eucgr.H04102 Eucalyptus grandis HOM05D000780 ORTHO05D009033 1.7e-25 120.9 206 41.3
FAN14G1321 Fragaria x ananassa HOM05D000780 ORTHO05D009033 3.8e-17 93.2 119 53.8
PGSC0003DMG401028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 3.8e-17 93.2 114 53.5
CAN.G4.37 Capsicum annuum HOM05D000780 ORTHO05D009033 6.1e-15 85.9 96 53.1
FvH4_3g18300 Fragaria vesca HOM05D000780 ORTHO05D196851 3.7e-12 76.6 50 78.0
FAN18G1636 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.2e-10 71.6 97 48.5
FAN21G2408 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.7e-09 67.8 61 63.9
FAN16G0199 Fragaria x ananassa HOM05D000780 ORTHO05D210745 1.1e-08 65.1 90 45.6


User provided reference genes

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