Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 4.4e-198 694.9 482 100.0
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.2e-156 555.8 479 68.1
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 6.0e-155 551.6 479 66.2
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.0e-154 549.3 479 65.8
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 8.7e-154 547.7 479 66.0
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 2.6e-150 536.2 386 76.2
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 1.2e-118 431.0 386 64.5
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 7.7e-110 401.7 379 60.7
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 5.2e-90 335.9 263 72.6
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 1.0e-82 311.6 397 47.9
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 2.3e-82 310.5 393 48.6
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 3.9e-77 293.1 395 46.6
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 1.2e-75 288.1 286 58.4
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 1.6e-75 287.7 284 57.4
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 8.0e-75 285.4 299 54.5
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 5.2e-74 282.7 299 54.2
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 9.8e-73 278.5 299 53.5
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 1.7e-72 277.7 419 46.1
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 2.2e-72 277.3 389 47.8
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 2.9e-72 276.9 395 46.8
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 2.4e-71 273.9 408 46.1
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 5.4e-71 272.7 271 55.7
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 9.2e-71 271.9 317 50.5
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 3.9e-69 266.5 387 46.3
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 5.0e-69 266.2 389 45.5
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 2.5e-68 263.8 383 46.0
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 7.3e-68 262.3 383 46.0
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 1.4e-66 258.1 467 43.0
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 8.9e-66 255.4 439 42.1
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 8.9e-66 255.4 439 42.1
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 1.2e-65 255.0 410 43.7
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 1.5e-65 254.6 296 52.0
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 2.6e-65 253.8 375 45.6
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 4.4e-65 253.1 290 52.8
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 9.8e-65 251.9 389 44.2
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 1.3e-64 251.5 279 52.3
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 1.4e-63 248.1 254 59.4
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 5.4e-63 246.1 288 51.4
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 9.2e-63 245.4 431 42.0
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 4.6e-62 243.0 385 42.9
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 1.0e-61 241.9 394 41.9
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 2.3e-61 240.7 286 51.4
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 6.6e-61 239.2 290 47.9
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 1.1e-60 238.4 291 49.1
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 1.5e-60 238.0 286 47.2
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 3.3e-60 236.9 280 50.4
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 1.2e-59 235.0 308 47.7
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 2.1e-59 234.2 399 41.9
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 3.6e-59 233.4 280 50.0
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 4.7e-59 233.0 285 47.4
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 8.1e-59 232.3 376 41.8
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 4.0e-58 229.9 308 48.1
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 4.0e-58 229.9 423 39.7
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 6.8e-58 229.2 281 50.2
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 1.5e-57 228.0 278 47.8
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 2.6e-57 227.3 293 47.4
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 2.6e-57 227.3 395 40.5
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 4.4e-57 226.5 395 40.5
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 5.8e-57 226.1 271 48.3
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 5.8e-57 226.1 298 46.0
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 7.6e-57 225.7 271 48.7
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 7.6e-57 225.7 386 41.2
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 3.7e-56 223.4 272 49.3
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 6.4e-56 222.6 307 45.0
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 6.4e-56 222.6 386 39.4
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 8.3e-56 222.2 307 46.6
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 8.3e-56 222.2 385 40.5
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 1.4e-55 221.5 298 47.3
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.9e-55 221.1 283 48.1
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 1.9e-55 221.1 270 48.1
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 1.9e-55 221.1 394 38.8
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 9.2e-55 218.8 296 46.6
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 2.1e-54 217.6 391 39.6
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 6.0e-54 216.1 265 49.8
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 1.3e-53 214.9 262 49.2
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 6.6e-53 212.6 285 46.7
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 3.3e-52 210.3 285 45.3
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 4.3e-52 209.9 391 40.2
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 5.6e-52 209.5 254 49.6
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 9.6e-52 208.8 255 51.0
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 1.6e-51 208.0 149 73.2
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 2.1e-51 207.6 486 35.2
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.4e-50 204.9 306 45.1
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 2.4e-47 194.1 459 36.6
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 7.1e-47 192.6 265 45.7
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 7.1e-47 192.6 265 45.7
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 7.8e-46 189.1 245 46.1
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 2.3e-45 187.6 157 64.3
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 1.3e-43 181.8 377 37.9
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 2.8e-43 180.6 275 44.0
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 3.6e-43 180.3 276 44.6
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 3.1e-42 177.2 277 43.3
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 3.4e-41 173.7 217 50.2
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 1.3e-40 171.8 277 41.9
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.4e-39 168.3 417 37.2
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 2.4e-39 167.5 113 77.9
FAN08G2149 Fragaria x ananassa HOM05D006063 ORTHO05D000023 5.4e-39 166.4 262 45.8
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 1.5e-36 158.3 202 47.0
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 5.6e-36 156.4 376 37.8
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 1.4e-31 141.7 131 59.5
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 9.3e-31 139.0 264 35.6
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 8.7e-29 132.5 284 35.2
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 1.1e-28 132.1 91 74.7
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 2.5e-28 131.0 113 66.4
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 2.8e-27 127.5 178 47.2
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 6.2e-27 126.3 309 33.7
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 6.2e-27 126.3 267 34.8
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 8.4e-24 115.9 78 76.9
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 2.5e-23 114.4 97 63.9
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 2.4e-18 97.8 103 49.5
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 1.4e-15 88.6 170 37.1
FAN04G1450 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.4e-15 88.6 50 90.0
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 1.5e-12 78.6 158 38.6
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 1.1e-10 72.4 282 27.3
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 5.3e-10 70.1 48 79.2
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 4.5e-09 67.0 40 85.0
CBR_g8884 Chara braunii HOM05D006063 ORTHO05D000023 1.2e-06 58.9 53 52.8


User provided reference genes

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