Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0448601 Rosa chinensis HOM05D007736 ORTHO05D009783 4.1e-160 568.2 318 100.0
FAN14G5928 Fragaria x ananassa HOM05D007736 ORTHO05D009783 2.5e-101 372.9 317 68.8
FAN05G0537 Fragaria x ananassa HOM05D007736 ORTHO05D009783 2.1e-100 369.8 321 65.1
FAN05G0165 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.8e-99 366.7 323 64.7
FAN09G0667 Fragaria x ananassa HOM05D007736 ORTHO05D009783 3.4e-98 362.5 316 64.2
FAN02G1431 Fragaria x ananassa HOM05D007736 ORTHO05D009783 4.2e-96 355.5 306 64.7
FvH4_6g01062 Fragaria vesca HOM05D000868 ORTHO05D000711 7.1e-88 328.2 246 72.4
Prupe.6G356600 Prunus persica HOM05D007736 ORTHO05D009783 3.2e-64 249.6 247 54.7
Prupe.7G056800 Prunus persica HOM05D007736 ORTHO05D009783 2.7e-63 246.5 297 49.2
MD04G1236600 Malus domestica HOM05D007736 ORTHO05D009783 4.8e-60 235.7 294 49.3
MD12G1255900 Malus domestica HOM05D007736 ORTHO05D009783 3.1e-43 179.9 145 66.2
Eucgr.I02697 Eucalyptus grandis HOM05D007736 ORTHO05D009783 3.8e-33 146.4 145 51.7
Cfa021836 Carpinus fangiana HOM05D007736 ORTHO05D009783 4.2e-32 142.9 142 52.1
Haze_10792 Corylus avellana HOM05D007736 ORTHO05D009783 9.5e-32 141.7 142 51.4
CiPaw.05G040000 Carya illinoinensis HOM05D007736 ORTHO05D009783 1.2e-31 141.4 177 45.8
PGR142G3153 Punica granatum HOM05D007736 ORTHO05D009783 2.6e-29 133.7 211 40.3
TWI14G1332 Tripterygium wilfordii HOM05D007736 ORTHO05D009783 2.2e-28 130.6 142 45.8
Psat1g218640 Pisum sativum HOM05D007736 ORTHO05D009783 1.4e-27 127.9 150 47.3
Ca_00110_v3 Cicer arietinum L. HOM05D007736 ORTHO05D009783 4.1e-27 126.3 149 46.3
ClCG09G014560 Citrullus lanatus HOM05D007736 ORTHO05D009783 4.1e-27 126.3 166 45.8
Glyma.15G050700 Glycine max HOM05D007736 ORTHO05D009783 4.1e-27 126.3 142 46.5
Phvul.006G209200 Phaseolus vulgaris HOM05D007736 ORTHO05D009783 5.4e-27 125.9 142 47.9
arahy.Tifrunner.gnm1.ann1.40XV2D Arachis hypogaea HOM05D007736 ORTHO05D009783 7.0e-27 125.6 126 50.0
CsaV3_7G022310 Cucumis sativus L. HOM05D007736 ORTHO05D009783 7.0e-27 125.6 166 44.6
Sed0025125 Sechium edule HOM05D007736 ORTHO05D009783 7.0e-27 125.6 166 45.2
arahy.Tifrunner.gnm1.ann1.JZ71MD Arachis hypogaea HOM05D007736 ORTHO05D009783 9.2e-27 125.2 133 49.6
Medtr2g008130 Medicago truncatula HOM05D007736 ORTHO05D009783 9.2e-27 125.2 150 47.3
COL.COLO4_20877 Corchorus olitorius HOM05D007736 ORTHO05D009783 1.6e-26 124.4 118 51.7
MELO3C028798.2 Cucumis melo HOM05D007736 ORTHO05D009783 2.0e-26 124.0 166 44.6
Glyma.08G181600 Glycine max HOM05D007736 ORTHO05D009783 2.7e-26 123.6 142 46.5
Thecc.02G144400 Theobroma cacao HOM05D007736 ORTHO05D009783 2.7e-26 123.6 118 51.7
Manes.04G057900 Manihot esculenta HOM05D007736 ORTHO05D009783 3.5e-26 123.2 198 42.9
VMungo0540G1970 Vigna mungo HOM05D007736 ORTHO05D009783 4.5e-26 122.9 143 46.9
Sabra12G0012700 Salix brachista HOM05D007736 ORTHO05D009783 2.3e-25 120.6 135 48.9
QL11p018598 Quercus lobata HOM05D007736 ORTHO05D009783 5.0e-25 119.4 115 53.9
Lj6g0003665 Lotus japonicus HOM05D007736 ORTHO05D009783 6.6e-25 119.0 143 45.5
Cpa.g.sc2.48 Carica papaya HOM05D007736 ORTHO05D009783 8.6e-25 118.6 132 46.2
Sed0013332 Sechium edule HOM05D007736 ORTHO05D009783 8.6e-25 118.6 130 50.8
Ciclev10028677m.g Citrus clementina HOM05D007736 ORTHO05D009783 1.1e-24 118.2 140 45.0
Rhsim11G0133400 Rhododendron simsii HOM05D007736 ORTHO05D009783 1.5e-24 117.9 136 45.6
Dinv24237 Davidia involucrata HOM05D007736 ORTHO05D009783 2.5e-24 117.1 115 48.7
Dinv19331 Davidia involucrata HOM05D007736 ORTHO05D009783 3.3e-24 116.7 126 48.4
Potri.012G020400 Populus trichocarpa HOM05D007736 ORTHO05D009783 3.3e-24 116.7 198 40.4
EL10Ac4g09677 Beta vulgaris HOM05D007736 ORTHO05D009783 1.6e-23 114.4 133 43.6
Sc16g0009620 Simmondsia chinensis HOM05D007736 ORTHO05D009783 1.6e-23 114.4 188 38.8
Cc02_g21990 Coffea canephora HOM05D007736 ORTHO05D009783 3.6e-23 113.2 138 44.9
Potri.015G008200 Populus trichocarpa HOM05D007736 ORTHO05D009783 8.0e-23 112.1 140 46.4
Sabra15G0006300 Salix brachista HOM05D007736 ORTHO05D009783 1.4e-22 111.3 140 44.3
Actinidia38961 Actinidia chinensis HOM05D007736 ORTHO05D009783 2.3e-22 110.5 148 40.5
Nitab4.5_0000249g0440 Nicotiana tabacum HOM05D007736 ORTHO05D009783 3.1e-22 110.2 120 45.8
AUR62000538 Chenopodium quinoa HOM05D007736 ORTHO05D009783 5.2e-22 109.4 164 42.7
PGSC0003DMG400029771 Solanum tuberosum HOM05D007736 ORTHO05D009783 1.5e-21 107.8 134 41.0
Hund21796 Selenicereus undatus HOM05D007736 ORTHO05D009783 2.6e-21 107.1 163 39.3
vmacro01801 Vaccinium macrocarpon HOM05D007736 ORTHO05D009783 2.6e-21 107.1 131 46.6
Lj5P244T47 Lonicera japonica HOM05D007736 ORTHO05D009783 3.4e-21 106.7 140 42.9
DCAR_021830 Daucus carota HOM05D007736 ORTHO05D009783 5.8e-21 105.9 125 44.0
Atru.chr6.1122 Acer truncatum HOM05D007736 ORTHO05D009783 7.5e-21 105.5 168 38.7
AUR62006887 Chenopodium quinoa HOM05D007736 ORTHO05D009783 9.8e-21 105.1 188 39.4
Nitab4.5_0014357g0010 Nicotiana tabacum HOM05D007736 ORTHO05D009783 1.3e-20 104.8 127 41.7
Solyc01g104790.4 Solanum lycopersicum HOM05D007736 ORTHO05D009783 8.3e-20 102.1 132 39.4
Lalb_Chr20g0123201 Lupinus albus HOM05D007736 ORTHO05D009783 1.4e-19 101.3 119 42.9
Sopen01g047310 Solanum pennellii HOM05D007736 ORTHO05D009783 4.1e-19 99.8 170 37.1
TAR625G1059 Trochodendron aralioides HOM05D007736 ORTHO05D009783 4.1e-19 99.8 144 41.7
HanXRQChr16g0514111 Helianthus annuus HOM05D007736 ORTHO05D009783 9.2e-19 98.6 147 39.5
TPR.G19753 Trifolium pratense HOM05D007736 ORTHO05D009783 1.2e-18 98.2 142 40.1
Actinidia00233 Actinidia chinensis HOM05D007736 ORTHO05D009783 2.0e-18 97.4 128 42.2
MSTRG.27826 Avicennia marina HOM05D007736 ORTHO05D009783 2.7e-18 97.1 117 41.9
Migut.N01016 Erythranthe guttata HOM05D007736 ORTHO05D009783 4.6e-18 96.3 174 34.5
CAN.G523.104 Capsicum annuum HOM05D007736 ORTHO05D009783 1.3e-17 94.7 132 40.2
Nn1g06123 Nelumbo nucifera HOM05D007736 ORTHO05D009783 3.9e-17 93.2 116 43.1
Lsat_1_v5_gn_5_106541 Lactuca sativa HOM05D007736 ORTHO05D009783 6.6e-17 92.4 131 37.4
Ah.06g188730 Amaranthus hybridus HOM05D007736 ORTHO05D009783 1.1e-16 91.7 119 42.0
unitig_26.g9583 Utricularia gibba HOM05D007736 ORTHO05D009783 1.1e-16 91.7 117 38.5
MSTRG.5252 Avicennia marina HOM05D007736 ORTHO05D009783 2.5e-16 90.5 137 38.7
ATR0772G143 Amborella trichopoda HOM05D007736 ORTHO05D009783 2.8e-15 87.0 154 35.1
TAR381G1413 Trochodendron aralioides HOM05D007736 ORTHO05D009783 1.4e-14 84.7 81 49.4
Aqoxy4G00650 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 7.5e-13 79.0 123 37.4
Aqoxy5G02135 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 2.9e-12 77.0 123 36.6
CDE02G1981 Ceratophyllum demersum HOM05D007736 ORTHO05D009783 5.4e-11 72.8 115 35.7
SGA_v2.0_scaffold45G17286 Striga asiatica HOM05D007736 ORTHO05D009783 9.2e-11 72.0 133 33.1
HanXRQChr10g0289121 Helianthus annuus HOM05D007736 ORTHO05D009783 1.7e-09 67.8 129 33.3
Zm00001eb382360 Zea mays HOM05D007736 ORTHO05D009783 3.9e-09 66.6 113 37.2
ECA234G2384 Erigeron canadensis HOM05D007736 ORTHO05D009783 1.5e-08 64.7 182 29.1


User provided reference genes

Program Settings