Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 5.1e-182 641.0 326 100.0
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 4.5e-170 601.3 327 93.6
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 2.2e-161 572.4 327 89.9
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.4e-131 472.6 327 78.3
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 7.0e-131 471.1 324 74.4
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.0e-129 467.2 294 84.0
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.5e-128 462.6 324 77.5
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 2.5e-128 462.6 324 73.1
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 9.8e-125 450.7 279 84.6
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.2e-114 417.2 326 67.2
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.2e-114 417.2 326 65.6
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.5e-114 415.6 326 65.3
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.0e-113 414.1 326 65.0
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.0e-113 414.1 326 65.0
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 8.6e-113 411.0 326 65.0
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 7.3e-112 407.9 328 64.9
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 7.3e-112 407.9 328 63.7
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 3.0e-110 402.5 326 64.4
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 5.2e-110 401.7 326 64.1
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 3.4e-109 399.1 326 61.7
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 9.8e-109 397.5 288 70.8
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 9.8e-109 397.5 326 63.8
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 1.7e-108 396.7 327 65.1
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.2e-108 396.4 328 62.8
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.9e-108 396.0 327 63.6
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 6.4e-108 394.8 326 62.6
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 5.4e-107 391.7 290 68.6
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 5.4e-107 391.7 327 63.6
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 5.4e-107 391.7 326 64.1
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 1.2e-106 390.6 326 62.9
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.0e-105 387.5 326 62.3
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 3.0e-105 386.0 326 62.0
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 6.6e-105 384.8 326 62.9
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 2.5e-104 382.9 328 62.2
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 8.0e-103 377.9 328 62.2
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.3e-102 376.3 341 58.7
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 4.0e-102 375.6 328 61.3
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 2.0e-101 373.2 332 60.8
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 3.4e-101 372.5 332 59.0
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 1.3e-100 370.5 334 60.8
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.7e-100 370.2 329 61.1
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 2.2e-100 369.8 325 59.4
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 1.4e-99 367.1 357 56.6
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 5.4e-99 365.2 336 57.4
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 7.0e-99 364.8 332 58.1
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 7.0e-99 364.8 326 60.1
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 9.2e-99 364.4 317 60.9
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 1.3e-97 360.5 325 57.5
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 1.7e-97 360.1 325 57.2
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 3.0e-97 359.4 331 57.1
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 7.3e-96 354.8 325 57.5
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.6e-95 353.6 326 58.6
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 6.2e-95 351.7 305 60.3
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 4.0e-94 349.0 326 55.8
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.2e-93 347.4 325 56.0
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 3.4e-93 345.9 327 54.4
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 4.4e-93 345.5 328 56.1
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 6.4e-92 341.7 335 54.6
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.2e-91 339.3 296 62.5
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 7.1e-91 338.2 327 55.4
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 9.2e-91 337.8 326 58.3
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 2.1e-90 336.7 335 55.2
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 2.1e-90 336.7 295 60.7
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 3.5e-90 335.9 298 57.0
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.0e-89 334.3 328 57.0
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 1.3e-89 334.0 337 55.5
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 2.3e-89 333.2 326 54.3
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 3.0e-89 332.8 329 55.9
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 3.0e-89 332.8 343 54.5
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 1.1e-88 330.9 331 53.2
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 3.3e-88 329.3 331 53.5
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 4.3e-88 328.9 329 55.6
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 9.5e-88 327.8 328 54.6
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 2.1e-87 326.6 330 54.2
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 2.8e-87 326.2 326 54.9
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.1e-86 324.3 319 53.9
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.1e-86 324.3 324 53.1
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 3.1e-86 322.8 332 53.6
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 5.2e-86 322.0 336 52.7
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 2.0e-85 320.1 253 61.3
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 1.3e-84 317.4 298 57.7
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.3e-84 317.4 305 56.4
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 1.4e-83 313.9 329 54.1
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 4.1e-83 312.4 250 66.0
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 3.5e-82 309.3 331 49.8
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 7.8e-82 308.1 328 51.5
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 5.1e-81 305.4 294 55.8
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 1.5e-80 303.9 332 52.1
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 2.4e-78 296.6 283 56.9
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 6.9e-78 295.0 356 48.6
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 9.0e-78 294.7 295 54.9
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.7e-76 290.4 328 51.2
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 5.4e-75 285.4 343 49.3
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 2.7e-74 283.1 343 49.6
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.3e-73 280.8 217 64.5
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 1.3e-73 280.8 343 48.7
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 4.8e-71 272.3 233 59.7
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 1.4e-70 270.8 267 52.8
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 1.4e-70 270.8 313 51.8
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 4.5e-69 265.8 343 45.8
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 8.4e-68 261.5 250 54.0
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 1.4e-67 260.8 276 51.4
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 4.6e-66 255.8 325 44.9
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 2.3e-65 253.4 311 48.6
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 5.6e-64 248.8 214 62.6
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.8e-63 246.5 304 48.7
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 4.0e-62 242.7 264 48.5
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.5e-61 240.7 214 57.5
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 4.5e-61 239.2 232 56.5
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 4.5e-61 239.2 232 56.5
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 3.8e-60 236.1 285 48.4
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.1e-59 234.6 325 46.5
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 1.1e-59 234.6 271 46.1
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 6.0e-58 228.8 278 45.7
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.8e-57 227.3 291 47.1
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 4.3e-56 222.6 242 46.7
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.1e-54 218.0 171 63.2
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 5.8e-53 212.2 331 39.3
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.9e-51 207.2 240 48.8
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 8.7e-49 198.4 208 52.4
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.9e-48 197.2 246 49.2
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 5.3e-46 189.1 176 56.8
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 6.5e-44 182.2 153 60.1
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 2.5e-43 180.3 122 68.0
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 7.9e-42 175.3 251 41.8
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 1.8e-41 174.1 213 47.9
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.0e-41 173.3 266 43.2
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 3.7e-39 166.4 180 51.7
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.4e-38 164.5 278 39.2
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 4.5e-37 159.5 178 49.4
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 7.7e-37 158.7 248 38.3
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 4.7e-34 149.4 148 53.4
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 2.0e-32 144.1 163 51.5
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.7e-31 139.8 201 44.3
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 4.8e-31 139.4 155 54.8
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 3.4e-29 133.3 165 49.7
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 1.0e-28 131.7 158 46.2
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 2.1e-26 124.0 281 30.2
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 7.0e-22 109.0 73 69.9
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 4.0e-17 93.2 173 31.2
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 1.7e-15 87.8 183 31.7
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 7.7e-13 79.0 58 63.8
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 2.1e-10 70.9 98 44.9
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 3.6e-10 70.1 49 69.4


User provided reference genes

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