Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 1.4e-263 912.5 503 100.0
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 2.1e-171 606.3 622 58.8
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 3.7e-171 605.5 622 58.7
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 5.7e-156 555.1 595 56.3
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 3.3e-111 406.4 604 47.8
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 8.1e-78 295.4 619 39.4
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 1.8e-56 224.6 563 36.2
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 1.1e-42 178.7 551 32.7
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 4.6e-41 173.3 515 33.0
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 7.4e-39 166.0 515 31.1
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 9.7e-39 165.6 514 31.3
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 4.1e-37 160.2 619 30.9
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 1.5e-36 158.3 596 29.2
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 1.0e-35 155.6 576 29.7
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 1.3e-35 155.2 553 29.5
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 2.9e-35 154.1 487 30.0
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 1.9e-34 151.4 536 31.3
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 2.5e-34 151.0 538 30.1
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 4.2e-34 150.2 480 30.8
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 1.2e-33 148.7 504 32.3
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 2.1e-33 147.9 496 29.6
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 4.7e-33 146.7 518 30.9
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 3.0e-32 144.1 501 32.5
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 1.1e-31 142.1 602 29.4
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 1.3e-30 138.7 496 30.8
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 1.7e-30 138.3 603 27.7
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 2.8e-30 137.5 546 30.4
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 3.7e-30 137.1 577 27.4
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 7.0e-29 132.9 605 28.8
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 7.0e-29 132.9 600 26.8
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 1.5e-28 131.7 576 27.1
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 3.5e-28 130.6 593 29.3
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 7.7e-28 129.4 486 29.2
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 2.2e-27 127.9 539 27.1
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 8.5e-27 125.9 646 24.9
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 1.9e-26 124.8 569 30.1
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 1.9e-26 124.8 587 26.2
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 2.7e-25 120.9 544 30.5
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 1.4e-24 118.6 327 32.7
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 3.0e-24 117.5 555 25.8
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 6.7e-24 116.3 474 28.7
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 6.7e-24 116.3 654 24.9
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 1.1e-23 115.5 576 27.1
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 1.1e-23 115.5 605 25.0
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 1.1e-23 115.5 490 27.1
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.5e-23 115.2 677 25.3
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 2.0e-23 114.8 585 26.0
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 2.6e-23 114.4 326 29.1
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 7.4e-23 112.8 414 30.0
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 1.7e-22 111.7 426 28.2
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 2.8e-22 110.9 504 26.0
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 6.3e-22 109.8 598 27.3
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 8.2e-22 109.4 720 25.7
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 1.8e-21 108.2 477 27.0
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 3.1e-21 107.5 647 25.8
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 9.1e-21 105.9 481 28.3
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 2.6e-20 104.4 71 64.8
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 3.5e-20 104.0 127 45.7
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 1.3e-19 102.1 600 26.0
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 1.3e-19 102.1 251 33.5
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 2.9e-19 100.9 691 25.5
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 5.0e-19 100.1 111 47.7
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 6.5e-19 99.8 391 29.4
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 1.5e-18 98.6 485 27.0
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 5.5e-18 96.7 319 30.1
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 1.2e-17 95.5 589 26.8
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 2.1e-17 94.7 76 61.8
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 3.6e-17 94.0 481 27.0
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 3.6e-17 94.0 481 25.4
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 3.6e-17 94.0 473 26.2
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 6.1e-17 93.2 393 27.0
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 8.0e-17 92.8 71 60.6
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 8.0e-17 92.8 485 26.6
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 1.4e-16 92.0 481 27.2
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 1.8e-16 91.7 95 52.6
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 3.0e-16 90.9 479 24.6
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 6.7e-16 89.7 500 24.4
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 1.2e-15 89.0 68 60.3
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 1.2e-15 89.0 143 41.3
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 3.3e-15 87.4 397 29.5
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 7.5e-15 86.3 292 31.8
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 9.7e-15 85.9 479 24.2
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 3.7e-14 84.0 483 25.9
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 6.3e-14 83.2 473 24.7
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 8.3e-14 82.8 482 24.9
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 8.3e-14 82.8 75 53.3
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 3.1e-13 80.9 465 25.8
Phvul.010G077868 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 4.1e-13 80.5 367 28.9
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 4.1e-13 80.5 182 34.6
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 4.1e-13 80.5 266 28.6
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 4.1e-13 80.5 494 24.9
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 5.3e-13 80.1 242 28.5
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 5.3e-13 80.1 468 24.6
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 5.3e-13 80.1 66 54.5
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 9.1e-13 79.3 95 48.4
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 1.6e-12 78.6 95 48.4
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 2.7e-12 77.8 211 34.6
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 5.9e-12 76.6 71 50.7
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 7.7e-12 76.3 97 45.4
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 1.0e-11 75.9 96 46.9
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.0e-11 75.9 147 37.4
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 1.0e-11 75.9 129 41.1
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 1.3e-11 75.5 265 30.9
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 1.7e-11 75.1 83 45.8
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 2.2e-11 74.7 484 24.2
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 2.9e-11 74.3 124 39.5
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 3.8e-11 73.9 212 33.5
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 5.0e-11 73.6 75 48.0
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 5.0e-11 73.6 609 25.9
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 6.5e-11 73.2 71 50.7
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 6.5e-11 73.2 386 26.7
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 8.5e-11 72.8 71 52.1
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 4.2e-10 70.5 476 23.3
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 5.5e-10 70.1 71 47.9
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 1.2e-09 68.9 476 23.3
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 2.1e-09 68.2 80 47.5
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 2.1e-09 68.2 50 66.0
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 1.0e-08 65.9 69 50.7
Cpa.g.sc123.15 Carica papaya HOM05D007504 ORTHO05D007629 1.4e-08 65.5 75 49.3
Os12g0506700 Oryza sativa ssp. japonica HOM05D007504 ORTHO05D007629 1.5e-07 62.0 86 38.4
HPP92_020229 Vanilla planifolia HOM05D007504 ORTHO05D007629 4.4e-07 60.5 62 45.2
ATR0609G018 Amborella trichopoda HOM05D007504 ORTHO05D007629 1.7e-06 58.5 61 44.3


User provided reference genes

Program Settings