Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 0.0e+00 1293.1 641 100.0
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 0.0e+00 1137.5 641 88.5
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 0.0e+00 1137.1 641 88.8
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 0.0e+00 1137.1 641 88.8
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 0.0e+00 1133.2 643 88.3
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.4e-292 1009.2 662 79.5
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 8.5e-274 946.8 641 75.2
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 3.6e-248 861.7 539 79.8
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 2.2e-229 799.3 644 65.2
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 9.6e-225 783.9 644 61.2
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 6.2e-224 781.2 641 61.5
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 3.8e-221 771.9 630 62.1
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 1.9e-220 769.6 640 60.8
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 1.6e-219 766.5 639 60.4
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 2.1e-219 766.1 640 61.4
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 4.6e-219 765.0 639 60.6
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 4.6e-219 765.0 638 61.1
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 2.1e-216 756.1 637 60.3
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 3.6e-216 755.4 640 60.6
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 6.2e-216 754.6 640 60.2
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 1.4e-215 753.4 649 59.8
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 5.3e-215 751.5 648 59.7
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 6.9e-215 751.1 637 61.9
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 5.8e-214 748.0 643 59.4
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 9.9e-214 747.3 637 60.3
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 1.7e-213 746.5 651 58.4
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 2.2e-213 746.1 638 61.9
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 1.3e-210 736.9 637 58.4
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 5.6e-209 731.5 647 58.0
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 1.3e-208 730.3 637 59.7
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 2.8e-208 729.2 503 70.6
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 1.8e-207 726.5 641 58.7
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 2.4e-207 726.1 638 57.7
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 4.0e-207 725.3 638 59.4
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 1.2e-206 723.8 641 57.6
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 2.0e-206 723.0 641 59.0
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 2.6e-206 722.6 649 58.1
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 4.5e-206 721.8 641 57.6
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 4.5e-206 721.8 641 58.5
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 4.9e-205 718.4 615 59.8
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 5.5e-204 714.9 635 57.2
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 4.6e-203 711.8 637 57.1
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 7.9e-203 711.1 645 56.6
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.8e-202 709.9 648 57.3
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.3e-202 709.5 631 58.5
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 2.5e-201 706.1 640 56.4
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 2.5e-201 706.1 650 56.9
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 2.1e-200 703.0 642 57.8
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 6.2e-200 701.4 650 55.8
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 6.2e-200 701.4 650 56.9
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 3.1e-199 699.1 648 55.6
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 9.0e-199 697.6 643 57.1
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 3.4e-198 695.7 630 56.2
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 4.5e-198 695.3 643 56.8
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 7.6e-198 694.5 648 56.5
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 7.6e-198 694.5 656 54.4
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 2.2e-197 693.0 639 57.1
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 1.1e-196 690.6 635 55.7
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 2.7e-195 686.0 543 63.2
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 4.6e-195 685.3 644 55.0
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 1.1e-193 680.6 644 54.7
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 1.5e-193 680.2 643 55.7
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 4.3e-193 678.7 628 56.8
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 2.2e-192 676.4 636 55.2
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 4.8e-192 675.2 646 54.6
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 3.1e-191 672.5 635 55.9
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 5.9e-190 668.3 444 73.0
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 3.8e-189 665.6 637 54.2
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 2.2e-184 649.8 594 57.1
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 6.3e-184 648.3 643 53.5
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 1.5e-182 643.7 641 53.8
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 1.5e-182 643.7 510 64.1
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 2.0e-182 643.3 404 77.5
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.9e-180 636.7 513 62.2
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.9e-180 636.7 513 62.2
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 6.7e-178 628.2 635 52.1
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 8.8e-178 627.9 504 61.3
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 5.7e-177 625.2 443 68.8
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 7.4e-177 624.8 636 52.4
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 3.1e-175 619.4 645 50.9
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 7.7e-174 614.8 702 49.6
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 5.5e-172 608.6 625 52.2
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 9.7e-169 597.8 562 54.8
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 4.5e-166 589.0 559 54.4
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 4.7e-163 578.9 649 49.9
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.4e-162 577.4 537 56.2
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 4.0e-162 575.9 389 71.5
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 2.2e-160 570.1 526 54.6
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 6.3e-160 568.5 528 56.6
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 1.5e-156 557.4 390 68.2
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 1.9e-156 557.0 389 69.4
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 1.9e-156 557.0 390 69.0
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 5.2e-154 548.9 395 65.8
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 5.2e-154 548.9 395 65.8
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 6.3e-152 542.0 524 53.4
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 1.0e-149 534.6 452 60.8
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 1.5e-148 530.8 486 56.4
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 3.6e-147 526.2 501 54.9
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 8.3e-144 515.0 473 54.1
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.8e-143 513.8 594 48.0
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.0e-138 498.0 495 54.3
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 1.4e-138 497.7 502 53.2
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 4.1e-135 486.1 494 53.0
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 1.3e-128 464.5 461 51.6
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 6.4e-128 462.2 469 53.1
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 2.7e-126 456.8 462 51.9
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 1.5e-124 451.1 346 64.2
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 1.1e-122 444.9 475 48.8
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 3.1e-122 443.4 404 55.9
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.2e-114 416.0 363 54.5
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 4.9e-112 409.5 509 42.6
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 1.4e-111 407.9 264 74.6
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 3.8e-104 383.3 257 71.6
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 8.7e-101 372.1 511 42.1
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 3.5e-94 350.1 306 54.9
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 1.0e-93 348.6 344 53.5
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 5.1e-93 346.3 453 39.7
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 4.8e-91 339.7 265 60.8
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 1.1e-82 312.0 253 68.4
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.4e-82 311.6 388 44.6
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 1.6e-78 298.1 163 90.8
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 5.9e-73 279.6 197 64.5
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 6.7e-69 266.2 470 34.9
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 2.6e-65 254.2 133 93.2
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.4e-53 215.3 195 51.3
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 2.7e-46 191.0 249 43.4
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 1.0e-45 189.1 229 48.0
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 6.5e-40 169.9 129 66.7
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 5.2e-37 160.2 125 61.6
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.3e-35 155.6 125 59.2
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 5.4e-34 150.2 228 41.2
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 2.9e-32 144.4 134 54.5
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 5.0e-32 143.7 124 58.1
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 7.8e-17 93.2 83 55.4
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 2.3e-16 91.7 113 45.1
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 6.6e-16 90.1 89 51.7
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.2e-12 79.3 83 48.2
QL01p050333 Quercus lobata HOM05D005279 ORTHO05D037448 1.9e-07 62.0 49 61.2
Hund21883 Selenicereus undatus HOM05D005279 ORTHO05D037448 5.6e-07 60.5 63 50.8
Hund30008 Selenicereus undatus HOM05D005279 ORTHO05D037448 5.6e-07 60.5 63 50.8


User provided reference genes

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