Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 0.0e+00 1477.2 720 100.0
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 0.0e+00 1281.9 719 85.7
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 0.0e+00 1143.3 693 78.5
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 0.0e+00 1120.5 693 78.5
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 0.0e+00 1089.7 698 74.8
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 0.0e+00 1085.5 698 74.4
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 1.8e-309 1065.4 698 72.9
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 9.2e-309 1063.1 698 73.4
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 1.0e-304 1049.7 701 70.2
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 4.0e-304 1047.7 699 70.1
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 8.9e-304 1046.6 702 70.4
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 2.4e-301 1038.5 699 71.5
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.3e-299 1031.9 704 70.0
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 3.9e-299 1031.2 704 69.9
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 1.9e-298 1028.9 699 70.4
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 4.7e-297 1024.2 699 69.8
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 2.3e-296 1021.9 726 68.2
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 4.0e-296 1021.1 702 69.5
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 8.9e-296 1020.0 699 70.5
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 1.2e-295 1019.6 700 68.6
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 2.9e-294 1015.0 736 67.1
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 4.9e-294 1014.2 713 68.4
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 8.3e-294 1013.4 698 68.1
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 3.2e-293 1011.5 712 67.7
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 3.5e-292 1008.1 721 67.1
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 1.7e-291 1005.7 698 69.3
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 3.9e-291 1004.6 708 68.5
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 4.3e-290 1001.1 716 67.7
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 6.2e-289 997.3 715 66.9
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 8.4e-286 986.9 720 65.8
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 9.2e-285 983.4 757 63.4
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 3.3e-282 974.9 719 65.5
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 4.3e-282 974.5 701 67.6
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 9.6e-282 973.4 700 65.9
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 1.4e-280 969.5 720 65.3
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 4.0e-280 968.0 700 66.0
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 8.9e-280 966.8 697 66.6
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 2.2e-278 962.2 691 67.7
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 1.3e-273 946.4 720 63.8
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 2.1e-273 945.7 700 65.3
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 5.3e-272 941.0 701 65.9
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 7.6e-271 937.2 703 64.6
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 4.9e-270 934.5 718 64.3
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 4.8e-265 917.9 697 63.6
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 6.2e-265 917.5 708 62.4
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 3.1e-264 915.2 695 63.9
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 4.0e-264 914.8 721 61.6
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 7.6e-263 910.6 731 62.4
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 7.6e-263 910.6 701 62.1
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 9.9e-263 910.2 706 61.9
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 1.9e-261 906.0 701 61.9
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 4.2e-261 904.8 705 61.7
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 5.5e-261 904.4 695 63.3
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 7.9e-260 900.6 703 63.3
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.0e-259 900.2 701 61.2
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 2.8e-257 892.1 580 72.4
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 3.1e-256 888.6 693 62.3
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 5.3e-256 887.9 695 62.2
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 1.5e-255 886.3 702 60.1
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 2.5e-253 879.0 620 68.4
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 1.2e-252 876.7 691 61.2
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 1.8e-251 872.8 705 59.7
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 5.1e-251 871.3 702 60.0
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 1.3e-249 866.7 703 59.3
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 1.6e-249 866.3 702 59.5
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.8e-249 865.5 704 59.8
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 3.7e-249 865.1 708 61.3
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 4.1e-248 861.7 708 59.5
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 6.9e-248 860.9 707 59.7
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 2.2e-246 855.9 697 61.3
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 3.8e-246 855.1 701 60.1
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 1.1e-245 853.6 720 58.8
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 2.5e-245 852.4 660 62.7
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 4.2e-245 851.7 697 59.4
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 2.7e-244 849.0 702 59.0
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 4.6e-244 848.2 762 56.7
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 7.9e-244 847.4 712 60.0
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.3e-241 840.1 699 60.1
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 8.2e-233 810.8 700 58.6
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 6.9e-232 807.7 697 57.1
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 7.2e-229 797.7 680 57.1
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 2.7e-228 795.8 711 54.7
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 6.7e-227 791.2 549 67.9
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 8.8e-227 790.8 700 54.9
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.1e-226 790.4 663 59.7
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 4.1e-224 781.9 731 51.6
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 2.9e-222 775.8 645 59.8
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 1.4e-219 766.9 740 51.1
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 6.5e-214 748.0 693 54.7
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 1.9e-213 746.5 634 57.4
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.2e-212 743.8 697 53.7
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 2.3e-206 723.0 685 53.9
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 4.7e-196 688.7 710 47.9
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 1.2e-188 664.1 705 47.9
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 1.3e-185 654.1 648 54.5
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.7e-185 652.5 696 49.6
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 8.6e-182 641.3 571 55.7
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.5e-173 614.0 471 61.8
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 1.9e-152 543.9 478 58.4
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 5.1e-150 535.8 357 70.6
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 3.0e-142 510.0 431 58.2
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.9e-136 490.7 710 38.2
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 1.5e-133 481.1 694 38.5
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 3.9e-126 456.4 766 37.3
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 2.2e-124 450.7 693 37.4
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 5.3e-123 446.0 681 37.9
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 1.9e-120 437.6 765 35.7
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 2.5e-120 437.2 365 58.6
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 5.0e-113 412.9 761 34.8
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.1e-109 401.7 344 57.8
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 4.4e-109 399.8 754 33.8
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 8.0e-95 352.4 337 55.8
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.0e-82 311.2 281 56.6
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 8.9e-78 295.8 163 82.2
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 5.2e-70 270.0 557 32.9
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 3.2e-67 260.8 189 64.0
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 3.1e-62 244.2 176 68.2
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 3.2e-59 234.2 137 83.2
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.0e-57 229.2 325 38.8
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 8.6e-57 226.1 137 77.4
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.9e-40 171.8 483 28.6
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 3.6e-39 167.5 125 64.0
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.3e-33 148.3 127 51.2
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 2.5e-24 118.2 102 52.0
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 6.9e-22 110.2 75 65.3
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 2.2e-15 88.6 396 24.2
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.7e-15 87.8 80 51.2
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 6.3e-15 87.0 80 51.2
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 7.7e-13 80.1 90 47.8
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 1.8e-09 68.9 167 32.3
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 2.2e-07 62.0 103 37.9
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 2.4e-06 58.5 60 55.0
Ciclev10023289m.g Citrus clementina HOM05D005923 ORTHO05D007376 4.1e-06 57.8 49 51.0
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 6.9e-06 57.0 48 58.3
Atru.chr12.1658 Acer truncatum HOM05D005923 ORTHO05D007376 9.1e-06 56.6 41 61.0


User provided reference genes

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