Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 0.0e+00 1444.5 830 100.0
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 0.0e+00 1273.5 835 90.4
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 0.0e+00 1267.7 835 90.1
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 0.0e+00 1248.4 835 89.1
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 0.0e+00 1218.0 860 85.3
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 1.1e-305 1053.1 837 74.4
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 1.3e-290 1003.0 836 73.6
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 2.9e-274 948.7 844 70.1
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 5.7e-230 801.6 817 61.7
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 2.8e-229 799.3 817 61.6
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 6.6e-226 788.1 809 63.8
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 8.9e-223 777.7 903 56.4
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 2.2e-221 773.1 827 58.9
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 1.9e-220 770.0 819 61.4
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 3.9e-218 762.3 836 59.1
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 3.6e-216 755.7 834 58.9
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 8.0e-216 754.6 834 58.3
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 7.5e-214 748.0 837 59.5
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 4.9e-213 745.3 837 58.1
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 8.3e-213 744.6 831 58.8
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 2.3e-210 736.5 840 58.0
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 1.1e-209 734.2 836 56.9
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 9.5e-209 731.1 839 55.7
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.0e-206 723.4 829 59.0
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 4.9e-205 718.8 834 56.7
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 4.1e-204 715.7 816 59.2
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 7.1e-204 714.9 831 57.0
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 3.5e-203 712.6 794 55.0
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 4.6e-203 712.2 798 53.5
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.0e-202 711.1 835 55.2
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 7.3e-201 704.9 831 54.2
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 7.3e-201 704.9 835 54.7
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 1.6e-200 703.7 842 57.6
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 2.1e-200 703.4 818 52.0
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 4.7e-200 702.2 834 53.8
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 1.2e-198 697.6 833 50.5
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.5e-195 686.0 829 56.7
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 1.7e-194 683.7 830 56.5
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 5.1e-194 682.2 843 52.6
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 8.7e-194 681.4 809 50.9
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 5.6e-193 678.7 804 56.6
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 3.6e-192 676.0 821 54.6
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 1.8e-191 673.7 839 54.8
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 5.3e-191 672.2 815 51.4
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 7.6e-190 668.3 823 55.5
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 2.4e-188 663.3 798 56.5
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 5.4e-188 662.1 811 49.7
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 1.5e-185 654.1 774 58.8
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 1.9e-185 653.7 839 54.8
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 4.3e-185 652.5 843 52.9
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 7.3e-185 651.7 808 53.7
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 2.1e-184 650.2 829 55.2
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.0e-183 646.0 837 52.3
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 3.8e-181 639.4 836 51.0
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 6.4e-181 638.6 800 54.4
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 1.4e-180 637.5 795 49.4
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 2.4e-180 636.7 839 53.3
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 3.2e-180 636.3 871 52.2
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 5.4e-180 635.6 839 53.8
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 1.2e-179 634.4 817 52.8
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 2.1e-179 633.6 848 51.9
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 4.6e-179 632.5 682 59.5
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 1.0e-178 631.3 838 52.9
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 2.3e-178 630.2 814 53.2
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 8.7e-178 628.2 833 52.8
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 1.9e-177 627.1 802 54.1
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 3.7e-176 622.9 838 53.3
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 6.2e-176 622.1 836 53.5
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 1.1e-175 621.3 822 52.7
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 2.4e-175 620.2 798 49.7
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 2.0e-174 617.1 839 47.1
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.3e-173 614.4 878 47.9
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 7.9e-171 605.1 780 49.7
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 3.9e-170 602.8 839 53.5
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 1.3e-168 597.8 820 51.2
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 1.6e-168 597.4 502 63.9
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 2.1e-168 597.0 800 51.5
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 3.7e-168 596.3 800 52.5
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 6.2e-168 595.5 811 53.8
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 2.0e-166 590.5 808 51.9
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 7.6e-166 588.6 807 49.7
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 1.3e-165 587.8 836 49.8
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 8.4e-165 585.1 825 53.3
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 6.1e-163 578.9 700 57.7
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 1.0e-162 578.2 806 49.4
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 3.9e-162 576.2 814 50.0
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 1.3e-160 571.2 820 51.5
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 1.6e-160 570.9 683 57.8
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 1.1e-159 568.2 813 50.6
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 2.6e-158 563.5 808 51.6
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 1.3e-157 561.2 807 51.1
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 1.7e-157 560.8 807 51.2
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 1.7e-157 560.8 759 51.6
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 6.5e-157 558.9 808 51.4
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 3.0e-154 550.1 801 50.8
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 3.9e-154 549.7 831 49.3
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 2.8e-152 543.5 818 50.6
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.3e-144 518.1 827 44.3
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 1.7e-136 491.1 744 50.5
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 1.9e-132 477.6 816 47.2
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 1.1e-127 461.8 877 43.4
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.4e-127 461.5 846 45.0
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 4.5e-126 456.4 493 54.6
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 4.7e-123 446.4 865 42.8
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 6.1e-123 446.0 928 43.3
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 1.2e-118 431.8 817 45.0
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 4.0e-106 390.2 764 44.0
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 4.6e-102 376.7 871 40.0
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 1.1e-90 339.0 813 35.2
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 3.6e-83 313.9 498 43.4
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.5e-81 308.5 496 42.9
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.9e-79 301.6 579 45.6
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 3.5e-78 297.4 580 35.7
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 8.1e-75 286.2 250 61.6
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 6.0e-62 243.4 824 28.9
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 4.0e-58 230.7 468 37.0
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 9.3e-55 219.5 866 28.5
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 3.5e-46 191.0 676 33.7
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 2.8e-43 181.4 198 55.1
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 1.5e-41 175.6 392 34.9
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 1.7e-40 172.2 186 48.9
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 1.2e-38 166.0 457 33.0
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.5e-36 159.1 118 66.1
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 3.3e-36 157.9 216 41.7
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 9.4e-31 139.8 141 53.2
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 6.1e-30 137.1 153 50.3
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 3.5e-25 121.3 199 40.2
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 4.8e-19 100.9 77 63.6
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 2.9e-16 91.7 85 56.5
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 1.6e-14 85.9 123 45.5
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 1.8e-13 82.4 47 87.2
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 2.9e-08 65.1 143 38.5
Ah.06g195240 Amaranthus hybridus HOM05D000941 ORTHO05D000882 1.9e-07 62.4 81 39.5


User provided reference genes

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